Wall clock time and date at job start Wed Apr 1 2020 04:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.47040 * 2 1 4 4 N 1.46498 * 109.47481 * 120.00265 * 2 1 3 5 5 C 1.35037 * 124.88214 * 275.00216 * 4 2 1 6 6 C 1.35366 * 107.22616 * 179.71586 * 5 4 2 7 7 C 1.41505 * 105.50494 * 0.25937 * 6 5 4 8 8 C 1.47706 * 126.51805 * 179.97438 * 7 6 5 9 9 O 1.21570 * 120.00033 * 6.42191 * 8 7 6 10 10 N 1.34778 * 120.00058 * 186.41910 * 8 7 6 11 11 C 1.43505 * 122.54775 * 185.83003 * 10 8 7 12 12 C 1.52194 * 113.96805 * 122.91066 * 11 10 8 13 13 C 1.51160 * 111.77066 * 82.86810 * 12 11 10 14 14 H 1.09001 * 110.22478 * 33.56599 * 13 12 11 15 15 C 1.53393 * 110.93682 * 156.63225 * 13 12 11 16 16 N 1.46623 * 108.10704 * 102.74475 * 15 13 12 17 17 C 1.36939 * 125.32541 * 178.61625 * 16 15 13 18 18 H 1.08008 * 119.99667 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00146 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00099 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99755 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47341 * 59.99804 * 21 19 17 23 23 H 1.48504 * 109.46996 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47319 * 299.99433 * 21 19 17 25 25 C 1.46663 * 109.35435 * 358.64275 * 16 15 13 26 26 C 1.54050 * 106.94141 * 18.30232 * 25 16 15 27 27 H 1.08994 * 111.48725 * 91.53469 * 26 25 16 28 28 C 1.51847 * 109.44547 * 214.13519 * 26 25 16 29 29 C 1.49557 * 122.54493 * 6.11919 * 10 8 7 30 30 N 1.28469 * 124.88596 * 95.19007 * 4 2 1 31 31 H 1.08996 * 109.46519 * 299.99354 * 1 2 3 32 32 H 1.08997 * 109.47219 * 59.99881 * 1 2 3 33 33 H 1.08996 * 109.46608 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46641 * 240.00120 * 2 1 3 35 35 H 1.08993 * 109.46727 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.46848 * 300.00517 * 3 2 1 37 37 H 1.09000 * 109.46930 * 60.00153 * 3 2 1 38 38 H 1.07996 * 126.38545 * 359.96822 * 5 4 2 39 39 H 1.07997 * 127.24712 * 180.27879 * 6 5 4 40 40 H 1.09000 * 108.52793 * 244.18877 * 11 10 8 41 41 H 1.08999 * 108.52238 * 1.72246 * 11 10 8 42 42 H 1.08994 * 109.14095 * 322.23210 * 12 11 10 43 43 H 1.08999 * 108.91109 * 203.35591 * 12 11 10 44 44 H 1.09001 * 109.74846 * 222.41273 * 15 13 12 45 45 H 1.08996 * 109.74884 * 343.07528 * 15 13 12 46 46 H 0.97002 * 119.99938 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.96389 * 258.93369 * 25 16 15 48 48 H 1.09000 * 109.97124 * 137.67196 * 25 16 15 49 49 H 1.09005 * 109.00723 * 54.29500 * 28 26 25 50 50 H 1.08995 * 108.94701 * 295.46647 * 28 26 25 51 51 H 1.09001 * 110.26187 * 9.14230 * 29 10 8 52 52 H 1.09000 * 110.26732 * 131.09713 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.1849 -0.1152 2.4063 6 6 2.6426 -1.0730 3.2462 7 6 2.7434 -2.2468 2.4622 8 6 3.1997 -3.5743 2.9219 9 8 3.4232 -3.7653 4.1015 10 7 3.3681 -4.5738 2.0336 11 6 3.6902 -5.9144 2.4317 12 6 2.6950 -6.9591 1.9475 13 6 2.9782 -7.3866 0.5256 14 1 4.0511 -7.3704 0.3339 15 6 2.3966 -8.7781 0.2454 16 7 1.1634 -8.6088 -0.5296 17 6 0.3732 -9.6269 -0.9926 18 1 0.6436 -10.6535 -0.7937 19 6 -0.7746 -9.3395 -1.7183 20 7 -1.1038 -8.0885 -1.9611 21 14 -1.8528 -10.7283 -2.3493 22 1 -2.3456 -11.5327 -1.2024 23 1 -3.0092 -10.1606 -3.0882 24 1 -1.0614 -11.5955 -3.2585 25 6 0.9088 -7.1787 -0.7318 26 6 2.2377 -6.4448 -0.4702 27 1 2.8152 -6.3257 -1.3869 28 6 1.9531 -5.0927 0.1595 29 6 3.2397 -4.3687 0.5578 30 7 2.3533 -1.9300 1.2437 31 1 -0.3632 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.9856 0.9159 2.6582 39 1 2.8805 -0.9644 4.2940 40 1 4.6768 -6.1640 2.0414 41 1 3.7324 -5.9516 3.5203 42 1 1.6882 -6.5448 1.9995 43 1 2.7535 -7.8313 2.5986 44 1 3.1126 -9.3683 -0.3265 45 1 2.1739 -9.2806 1.1866 46 1 -1.9057 -7.8877 -2.4686 47 1 0.1486 -6.8333 -0.0311 48 1 0.5804 -7.0002 -1.7557 49 1 1.3376 -5.2371 1.0475 50 1 1.4061 -4.4776 -0.5550 51 1 3.1608 -3.3057 0.3298 52 1 4.0954 -4.8026 0.0404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946806675.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:41 Heat of formation + Delta-G solvation = 84.539867 kcal Electronic energy + Delta-G solvation = -31855.894473 eV Core-core repulsion = 27858.432279 eV Total energy + Delta-G solvation = -3997.462194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.84817 -40.05290 -38.33113 -36.13203 -35.72996 -33.05203 -32.17731 -31.06816 -30.93466 -30.13984 -27.83297 -27.38899 -27.31140 -24.85321 -23.82687 -23.04562 -22.61551 -21.62811 -20.43730 -19.99776 -19.34855 -18.15394 -17.65915 -16.94600 -16.81636 -16.20957 -15.82052 -15.23059 -14.95256 -14.83679 -14.22224 -14.04637 -13.98114 -13.89249 -13.53673 -13.28700 -13.22375 -12.90125 -12.83278 -12.79728 -12.62027 -12.42340 -12.07134 -11.86606 -11.63997 -11.61705 -11.31933 -11.27772 -11.03907 -10.87063 -10.72218 -10.62030 -10.42486 -10.10654 -9.88886 -9.82163 -9.67543 -9.52039 -9.39714 -9.25349 -9.18019 -8.57406 -8.38685 -6.74312 -5.61472 -2.99736 1.54235 2.03670 2.20799 3.16019 3.43254 3.46814 3.47263 3.48510 3.98606 4.32991 4.44646 4.53815 4.54224 4.56623 4.89820 4.96829 5.10795 5.15098 5.18766 5.22293 5.31785 5.32509 5.44979 5.46822 5.50556 5.56219 5.58744 5.61946 5.68332 5.71122 5.73996 5.89286 5.94886 6.07999 6.10013 6.23531 6.29615 6.32867 6.50732 6.54550 6.61663 6.67505 6.74064 6.79087 6.83531 6.92632 7.15814 7.53826 7.63500 7.72269 7.82154 7.92992 8.31559 8.41392 9.30052 9.91215 10.55970 11.44175 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012566 B = 0.002985 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.636373 B = 9376.433288 C =11042.460349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.140 3.860 3 C -0.164 4.164 4 N -0.278 5.278 5 C -0.019 4.019 6 C -0.181 4.181 7 C -0.011 4.011 8 C 0.608 3.392 9 O -0.543 6.543 10 N -0.595 5.595 11 C 0.112 3.888 12 C -0.124 4.124 13 C -0.092 4.092 14 H 0.065 0.935 15 C 0.142 3.858 16 N -0.603 5.603 17 C -0.223 4.223 18 H 0.076 0.924 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.171 3.829 26 C -0.109 4.109 27 H 0.065 0.935 28 C -0.118 4.118 29 C 0.096 3.904 30 N -0.251 5.251 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.177 0.823 39 H 0.160 0.840 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.019 0.981 45 H 0.020 0.980 46 H 0.251 0.749 47 H 0.013 0.987 48 H 0.088 0.912 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.114 0.886 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.397 21.506 4.386 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.039 3.961 3 C -0.222 4.222 4 N -0.067 5.067 5 C -0.161 4.161 6 C -0.209 4.209 7 C -0.171 4.171 8 C 0.395 3.605 9 O -0.419 6.419 10 N -0.327 5.327 11 C -0.012 4.012 12 C -0.162 4.162 13 C -0.111 4.111 14 H 0.083 0.917 15 C 0.016 3.984 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.743 3.257 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.046 3.954 26 C -0.129 4.129 27 H 0.084 0.916 28 C -0.156 4.156 29 C -0.026 4.026 30 N -0.086 5.086 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.195 0.805 39 H 0.177 0.823 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.037 0.963 45 H 0.038 0.962 46 H 0.061 0.939 47 H 0.031 0.969 48 H 0.106 0.894 49 H 0.089 0.911 50 H 0.083 0.917 51 H 0.131 0.869 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.110 21.001 3.756 22.823 hybrid contribution -0.612 -0.440 0.380 0.845 sum 7.498 20.560 4.136 22.272 Atomic orbital electron populations 1.22238 0.92643 1.04171 1.03409 1.21619 0.95742 0.93233 0.85461 1.22195 1.02423 0.93591 1.03978 1.45940 1.45000 1.06233 1.09532 1.22718 1.06959 1.00738 0.85703 1.21731 1.07000 0.91028 1.01147 1.21886 1.08423 0.95936 0.90860 1.16825 0.77025 0.81834 0.84785 1.90762 1.52446 1.82168 1.16496 1.47790 1.68587 1.08418 1.07858 1.20745 0.97921 0.81296 1.01229 1.21544 1.00322 0.97837 0.96538 1.21800 0.98709 0.96283 0.94292 0.91653 1.21118 0.89200 0.93580 0.94465 1.44208 1.24117 1.02601 1.61901 1.19034 1.02120 0.86823 1.27171 0.90628 1.24777 0.98348 0.96503 1.01020 1.69896 1.26445 1.15815 1.44919 0.86185 0.79947 0.81002 0.78557 1.21281 1.21637 1.21221 1.21401 0.89723 0.82083 1.02167 1.22450 0.99795 0.93748 0.96890 0.91634 1.21756 0.96698 0.95908 1.01276 1.22916 0.98381 1.03423 0.77880 1.73548 1.16095 0.97272 1.21693 0.91700 0.89955 0.90923 0.87065 0.91297 0.89606 0.91285 0.80542 0.82269 0.92242 0.90056 0.90664 0.91121 0.96305 0.96184 0.93873 0.96912 0.89421 0.91058 0.91718 0.86865 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 9.52 37.16 0.35 -0.68 16 2 C 0.14 0.91 3.80 -67.93 -0.26 0.65 16 3 C -0.16 -0.62 8.81 37.16 0.33 -0.29 16 4 N -0.28 -2.71 3.22 -54.83 -0.18 -2.89 16 5 C -0.02 -0.16 10.54 -17.17 -0.18 -0.35 16 6 C -0.18 -2.11 10.81 -39.36 -0.43 -2.54 16 7 C -0.01 -0.16 6.88 -82.77 -0.57 -0.73 16 8 C 0.61 9.92 7.74 -12.39 -0.10 9.82 16 9 O -0.54 -10.12 16.45 5.30 0.09 -10.04 16 10 N -0.59 -9.03 2.61 -175.18 -0.46 -9.48 16 11 C 0.11 1.65 5.76 -6.04 -0.03 1.62 16 12 C -0.12 -2.03 4.79 -28.07 -0.13 -2.16 16 13 C -0.09 -1.61 2.79 -89.86 -0.25 -1.86 16 14 H 0.07 1.02 7.67 -51.93 -0.40 0.62 16 15 C 0.14 3.05 6.82 -3.77 -0.03 3.02 16 16 N -0.60 -15.74 3.38 -172.12 -0.58 -16.32 16 17 C -0.22 -6.35 10.25 -15.06 -0.15 -6.50 16 18 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 19 C -0.01 -0.31 5.48 -17.43 -0.10 -0.41 16 20 N -0.92 -27.19 10.16 55.49 0.56 -26.63 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.17 4.18 5.13 -3.41 -0.02 4.17 16 26 C -0.11 -2.04 2.94 -89.17 -0.26 -2.30 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 28 C -0.12 -1.93 4.50 -27.36 -0.12 -2.05 16 29 C 0.10 1.34 5.81 -2.39 -0.01 1.33 16 30 N -0.25 -3.20 8.58 33.42 0.29 -2.92 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.07 0.21 7.05 -51.93 -0.37 -0.16 16 38 H 0.18 0.90 7.16 -52.49 -0.38 0.52 16 39 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.06 0.80 7.68 -51.93 -0.40 0.40 16 41 H 0.08 1.25 7.01 -51.93 -0.36 0.89 16 42 H 0.07 1.41 5.87 -51.93 -0.30 1.10 16 43 H 0.07 1.11 7.53 -51.93 -0.39 0.72 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.02 0.43 7.40 -51.93 -0.38 0.05 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 47 H 0.01 0.35 7.72 -51.93 -0.40 -0.05 16 48 H 0.09 2.42 6.19 -51.93 -0.32 2.10 16 49 H 0.07 1.31 5.47 -51.93 -0.28 1.02 16 50 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 51 H 0.11 1.52 4.64 -51.93 -0.24 1.28 16 52 H 0.07 0.94 7.82 -51.93 -0.41 0.54 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -34.09 394.31 -9.73 -43.82 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.41 Total: 0.40 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.96 Total: 0.73 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.36 Total: -58.24 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.09 -9.73 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946806675.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.357 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds