Wall clock time and date at job start Wed Apr 1 2020 04:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.47040 * 2 1 4 4 N 1.46498 * 109.47481 * 120.00265 * 2 1 3 5 5 C 1.35037 * 124.88214 * 275.00216 * 4 2 1 6 6 C 1.35366 * 107.22616 * 179.71586 * 5 4 2 7 7 C 1.41505 * 105.50494 * 0.25937 * 6 5 4 8 8 C 1.47706 * 126.51805 * 179.97438 * 7 6 5 9 9 O 1.21570 * 120.00033 * 6.42191 * 8 7 6 10 10 N 1.34778 * 120.00058 * 186.41910 * 8 7 6 11 11 C 1.43505 * 122.54775 * 185.83003 * 10 8 7 12 12 C 1.52194 * 113.96805 * 122.91066 * 11 10 8 13 13 C 1.51160 * 111.77066 * 82.86810 * 12 11 10 14 14 H 1.09001 * 110.22478 * 33.56599 * 13 12 11 15 15 C 1.53393 * 110.93682 * 156.63225 * 13 12 11 16 16 N 1.46623 * 108.10704 * 102.74475 * 15 13 12 17 17 C 1.36939 * 125.32541 * 178.61625 * 16 15 13 18 18 H 1.08008 * 119.99667 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00146 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00099 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99755 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47341 * 59.99804 * 21 19 17 23 23 H 1.48504 * 109.46996 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47319 * 299.99433 * 21 19 17 25 25 C 1.46663 * 109.35435 * 358.64275 * 16 15 13 26 26 C 1.54050 * 106.94141 * 18.30232 * 25 16 15 27 27 H 1.08994 * 111.48725 * 91.53469 * 26 25 16 28 28 C 1.51847 * 109.44547 * 214.13519 * 26 25 16 29 29 C 1.49557 * 122.54493 * 6.11919 * 10 8 7 30 30 N 1.28469 * 124.88596 * 95.19007 * 4 2 1 31 31 H 1.08996 * 109.46519 * 299.99354 * 1 2 3 32 32 H 1.08997 * 109.47219 * 59.99881 * 1 2 3 33 33 H 1.08996 * 109.46608 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46641 * 240.00120 * 2 1 3 35 35 H 1.08993 * 109.46727 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.46848 * 300.00517 * 3 2 1 37 37 H 1.09000 * 109.46930 * 60.00153 * 3 2 1 38 38 H 1.07996 * 126.38545 * 359.96822 * 5 4 2 39 39 H 1.07997 * 127.24712 * 180.27879 * 6 5 4 40 40 H 1.09000 * 108.52793 * 244.18877 * 11 10 8 41 41 H 1.08999 * 108.52238 * 1.72246 * 11 10 8 42 42 H 1.08994 * 109.14095 * 322.23210 * 12 11 10 43 43 H 1.08999 * 108.91109 * 203.35591 * 12 11 10 44 44 H 1.09001 * 109.74846 * 222.41273 * 15 13 12 45 45 H 1.08996 * 109.74884 * 343.07528 * 15 13 12 46 46 H 0.97002 * 119.99938 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.96389 * 258.93369 * 25 16 15 48 48 H 1.09000 * 109.97124 * 137.67196 * 25 16 15 49 49 H 1.09005 * 109.00723 * 54.29500 * 28 26 25 50 50 H 1.08995 * 108.94701 * 295.46647 * 28 26 25 51 51 H 1.09001 * 110.26187 * 9.14230 * 29 10 8 52 52 H 1.09000 * 110.26732 * 131.09713 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.1849 -0.1152 2.4063 6 6 2.6426 -1.0730 3.2462 7 6 2.7434 -2.2468 2.4622 8 6 3.1997 -3.5743 2.9219 9 8 3.4232 -3.7653 4.1015 10 7 3.3681 -4.5738 2.0336 11 6 3.6902 -5.9144 2.4317 12 6 2.6950 -6.9591 1.9475 13 6 2.9782 -7.3866 0.5256 14 1 4.0511 -7.3704 0.3339 15 6 2.3966 -8.7781 0.2454 16 7 1.1634 -8.6088 -0.5296 17 6 0.3732 -9.6269 -0.9926 18 1 0.6436 -10.6535 -0.7937 19 6 -0.7746 -9.3395 -1.7183 20 7 -1.1038 -8.0885 -1.9611 21 14 -1.8528 -10.7283 -2.3493 22 1 -2.3456 -11.5327 -1.2024 23 1 -3.0092 -10.1606 -3.0882 24 1 -1.0614 -11.5955 -3.2585 25 6 0.9088 -7.1787 -0.7318 26 6 2.2377 -6.4448 -0.4702 27 1 2.8152 -6.3257 -1.3869 28 6 1.9531 -5.0927 0.1595 29 6 3.2397 -4.3687 0.5578 30 7 2.3533 -1.9300 1.2437 31 1 -0.3632 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.9856 0.9159 2.6582 39 1 2.8805 -0.9644 4.2940 40 1 4.6768 -6.1640 2.0414 41 1 3.7324 -5.9516 3.5203 42 1 1.6882 -6.5448 1.9995 43 1 2.7535 -7.8313 2.5986 44 1 3.1126 -9.3683 -0.3265 45 1 2.1739 -9.2806 1.1866 46 1 -1.9057 -7.8877 -2.4686 47 1 0.1486 -6.8333 -0.0311 48 1 0.5804 -7.0002 -1.7557 49 1 1.3376 -5.2371 1.0475 50 1 1.4061 -4.4776 -0.5550 51 1 3.1608 -3.3057 0.3298 52 1 4.0954 -4.8026 0.0404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946806675.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:40 Heat of formation + Delta-G solvation = 64.482318 kcal Electronic energy + Delta-G solvation = -31856.764233 eV Core-core repulsion = 27858.432279 eV Total energy + Delta-G solvation = -3998.331955 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.68227 -41.37674 -39.80013 -37.26747 -36.71921 -34.85939 -33.54139 -32.61889 -31.86599 -31.23729 -29.01759 -28.92844 -28.19154 -26.36047 -25.25757 -24.21526 -23.77653 -22.70719 -21.95070 -21.09305 -20.45322 -19.68396 -18.92607 -18.49429 -17.84904 -17.14004 -17.01762 -16.82894 -16.42796 -15.98636 -15.51990 -15.38502 -15.14853 -14.97840 -14.77296 -14.48369 -14.33834 -14.05904 -13.98964 -13.75436 -13.62909 -13.34314 -13.22928 -13.06423 -13.03202 -12.84267 -12.68436 -12.54802 -12.43316 -12.32704 -12.11662 -12.07062 -11.99572 -11.73413 -11.64610 -11.29961 -11.20960 -11.03221 -10.90347 -10.68723 -10.21146 -10.03658 -9.62816 -8.85810 -7.78708 -5.20356 0.53180 1.23012 1.44358 1.48029 1.50200 1.54219 2.04126 2.34455 2.49539 3.26792 3.32004 3.59631 3.69875 3.76777 3.82373 3.89343 3.94595 3.98594 4.07981 4.11613 4.17687 4.28161 4.33959 4.49935 4.65092 4.66257 4.67293 4.70373 4.72817 4.74223 4.78687 4.81374 4.85212 4.91156 4.94493 5.02079 5.07277 5.13216 5.16296 5.19592 5.20778 5.26056 5.31779 5.39504 5.46900 5.60585 5.65343 5.76231 5.85604 5.99727 6.29669 6.34623 6.88431 7.13227 7.16293 7.82602 8.44705 9.24765 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012566 B = 0.002985 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.636373 B = 9376.433288 C =11042.460349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.272 5.272 5 C 0.004 3.996 6 C -0.202 4.202 7 C -0.044 4.044 8 C 0.603 3.397 9 O -0.576 6.576 10 N -0.596 5.596 11 C 0.116 3.884 12 C -0.114 4.114 13 C -0.079 4.079 14 H 0.102 0.898 15 C 0.135 3.865 16 N -0.625 5.625 17 C -0.244 4.244 18 H 0.079 0.921 19 C -0.067 4.067 20 N -0.948 5.948 21 Si 0.980 3.020 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.275 1.275 25 C 0.182 3.818 26 C -0.096 4.096 27 H 0.079 0.921 28 C -0.103 4.103 29 C 0.108 3.892 30 N -0.268 5.268 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.221 0.779 39 H 0.163 0.837 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.027 0.973 45 H 0.019 0.981 46 H 0.246 0.754 47 H -0.026 1.026 48 H 0.052 0.948 49 H 0.046 0.954 50 H 0.061 0.939 51 H 0.123 0.877 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.777 23.331 3.877 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 C -0.215 4.215 4 N -0.061 5.061 5 C -0.139 4.139 6 C -0.230 4.230 7 C -0.202 4.202 8 C 0.391 3.609 9 O -0.455 6.455 10 N -0.327 5.327 11 C -0.008 4.008 12 C -0.153 4.153 13 C -0.097 4.097 14 H 0.120 0.880 15 C 0.010 3.990 16 N -0.351 5.351 17 C -0.373 4.373 18 H 0.097 0.903 19 C -0.260 4.260 20 N -0.598 5.598 21 Si 0.808 3.192 22 H -0.207 1.207 23 H -0.218 1.218 24 H -0.200 1.200 25 C 0.057 3.943 26 C -0.115 4.115 27 H 0.097 0.903 28 C -0.142 4.142 29 C -0.014 4.014 30 N -0.105 5.105 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.060 0.940 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.237 0.763 39 H 0.181 0.819 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.045 0.955 45 H 0.037 0.963 46 H 0.055 0.945 47 H -0.008 1.008 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.080 0.920 51 H 0.141 0.859 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.518 22.812 3.241 24.930 hybrid contribution -1.124 -0.974 0.512 1.573 sum 8.394 21.838 3.753 23.695 Atomic orbital electron populations 1.22228 0.92443 1.02542 1.04908 1.21982 0.95852 0.94728 0.84189 1.22198 1.02211 0.91387 1.05667 1.46357 1.43504 1.05443 1.10832 1.23277 1.04317 1.01874 0.84471 1.21953 1.08213 0.91011 1.01825 1.21774 1.10505 0.95746 0.92140 1.17202 0.76425 0.82793 0.84460 1.90724 1.54029 1.82989 1.17744 1.47858 1.68208 1.08424 1.08202 1.20702 0.98383 0.80751 1.00935 1.21437 0.99166 0.98556 0.96112 1.21769 1.00205 0.93392 0.94374 0.88009 1.21346 0.87734 0.96123 0.93770 1.44544 1.25352 1.02736 1.62465 1.19436 1.02858 0.87755 1.27219 0.90269 1.25650 0.99802 0.98936 1.01578 1.70159 1.26512 1.17654 1.45440 0.85135 0.77932 0.78170 0.77983 1.20704 1.21842 1.20050 1.21121 0.91984 0.82368 0.98848 1.22300 0.96721 0.94366 0.98141 0.90282 1.21580 0.97854 0.94851 0.99900 1.22884 0.97380 1.03832 0.77281 1.73418 1.16772 0.99016 1.21292 0.91002 0.87699 0.94045 0.87305 0.91555 0.87657 0.89895 0.76268 0.81937 0.89584 0.90735 0.93710 0.90413 0.95494 0.96286 0.94496 1.00814 0.93008 0.93488 0.92009 0.85950 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.52 71.98 0.69 -1.07 16 2 C 0.13 1.42 3.80 45.00 0.17 1.59 16 3 C -0.16 -0.62 8.81 71.98 0.63 0.01 16 4 N -0.27 -4.84 3.22 -327.37 -1.05 -5.90 16 5 C 0.00 0.06 10.54 83.54 0.88 0.94 16 6 C -0.20 -4.55 10.81 22.41 0.24 -4.30 16 7 C -0.04 -1.24 6.88 42.46 0.29 -0.95 16 8 C 0.60 19.85 7.74 86.75 0.67 20.52 16 9 O -0.58 -21.97 16.45 -3.94 -0.06 -22.03 16 10 N -0.60 -17.78 2.61 -826.43 -2.16 -19.93 16 11 C 0.12 3.29 5.76 86.67 0.50 3.79 16 12 C -0.11 -3.69 4.79 29.73 0.14 -3.54 16 13 C -0.08 -2.66 2.79 -10.30 -0.03 -2.69 16 14 H 0.10 2.79 7.67 -2.39 -0.02 2.77 16 15 C 0.14 5.74 6.82 86.49 0.59 6.33 16 16 N -0.63 -33.49 3.38 -698.46 -2.36 -35.84 16 17 C -0.24 -14.17 10.25 84.03 0.86 -13.30 16 18 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 19 C -0.07 -3.92 5.48 84.86 0.47 -3.45 16 20 N -0.95 -58.10 10.16 21.65 0.22 -57.88 16 21 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 C 0.18 9.29 5.13 86.70 0.44 9.74 16 26 C -0.10 -3.57 2.94 -9.86 -0.03 -3.60 16 27 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 28 C -0.10 -3.41 4.50 30.19 0.14 -3.28 16 29 C 0.11 2.88 5.81 85.76 0.50 3.38 16 30 N -0.27 -6.70 8.58 -48.18 -0.41 -7.11 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.10 0.06 8.14 -2.39 -0.02 0.05 16 37 H 0.08 0.13 7.05 -2.39 -0.02 0.11 16 38 H 0.22 1.27 7.16 -2.91 -0.02 1.25 16 39 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 40 H 0.09 2.03 7.68 -2.39 -0.02 2.01 16 41 H 0.07 2.26 7.01 -2.39 -0.02 2.24 16 42 H 0.04 1.73 5.87 -2.39 -0.01 1.72 16 43 H 0.08 2.39 7.53 -2.39 -0.02 2.37 16 44 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.02 0.82 7.40 -2.39 -0.02 0.80 16 46 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 47 H -0.03 -1.50 7.72 -2.39 -0.02 -1.52 16 48 H 0.05 3.01 6.19 -2.39 -0.01 2.99 16 49 H 0.05 1.80 5.47 -2.38 -0.01 1.79 16 50 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 51 H 0.12 3.16 4.64 -2.39 -0.01 3.15 16 52 H 0.09 2.14 7.82 -2.39 -0.02 2.13 16 Total: -1.00 -78.60 394.31 4.27 -74.33 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.91 Total: 15.39 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 7.16 Total: 10.12 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -5.76 Total: -126.66 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.06 Total: -22.03 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -78.60 4.27 -74.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946806675.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.813 kcal (2) G-P(sol) polarization free energy of solvation -78.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds