Wall clock time and date at job start Wed Apr 1 2020 04:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47579 * 2 1 4 4 N 1.46498 * 109.47270 * 179.97438 * 3 2 1 5 5 N 1.39931 * 125.75414 * 89.97621 * 4 3 2 6 6 C 1.30443 * 108.89761 * 179.97438 * 5 4 3 7 7 C 1.41285 * 108.02534 * 0.02562 * 6 5 4 8 8 C 1.47427 * 126.41718 * 179.97438 * 7 6 5 9 9 O 1.21610 * 119.99739 * 243.65812 * 8 7 6 10 10 N 1.34770 * 120.00354 * 63.65540 * 8 7 6 11 11 C 1.46497 * 119.99778 * 356.98596 * 10 8 7 12 12 C 1.53002 * 109.46913 * 263.46296 * 11 10 8 13 13 C 1.46499 * 120.00370 * 176.98030 * 10 8 7 14 14 C 1.53946 * 113.74023 * 321.26427 * 13 10 8 15 15 N 1.47811 * 86.03910 * 90.88266 * 14 13 10 16 16 C 1.36936 * 134.45559 * 204.64922 * 15 14 13 17 17 H 1.08005 * 119.99977 * 179.85923 * 16 15 14 18 18 C 1.38808 * 120.00145 * 359.85644 * 16 15 14 19 19 N 1.31619 * 119.99841 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00185 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46415 * 60.00456 * 20 18 16 22 22 H 1.48504 * 109.47104 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47410 * 300.00756 * 20 18 16 24 24 C 1.47587 * 91.05019 * 24.54736 * 15 14 13 25 25 C 1.34263 * 125.75238 * 270.26547 * 4 3 2 26 26 C 1.50695 * 126.29194 * 359.97438 * 25 4 3 27 27 C 1.53007 * 117.49617 * 196.15912 * 26 25 4 28 28 C 1.53003 * 117.50028 * 127.50219 * 26 25 4 29 29 H 1.08999 * 109.47072 * 59.99618 * 1 2 3 30 30 H 1.08998 * 109.47514 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47185 * 299.99840 * 1 2 3 32 32 H 1.09006 * 109.47010 * 239.99733 * 2 1 3 33 33 H 1.08999 * 109.47072 * 120.00382 * 2 1 3 34 34 H 1.09001 * 109.46731 * 59.99883 * 3 2 1 35 35 H 1.08996 * 109.46745 * 300.00142 * 3 2 1 36 36 H 1.08006 * 125.98700 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47821 * 23.46405 * 11 10 8 38 38 H 1.09000 * 109.47353 * 143.46882 * 11 10 8 39 39 H 1.08997 * 109.47139 * 303.71674 * 12 11 10 40 40 H 1.08995 * 109.47287 * 63.71849 * 12 11 10 41 41 H 1.09010 * 109.47111 * 183.71862 * 12 11 10 42 42 H 1.09005 * 112.94616 * 189.66758 * 13 10 8 43 43 H 1.09010 * 113.76581 * 205.14356 * 14 13 10 44 44 H 1.08998 * 113.77016 * 336.54013 * 14 13 10 45 45 H 0.97009 * 119.99719 * 179.97438 * 19 18 16 46 46 H 1.08997 * 113.76721 * 221.15355 * 24 15 14 47 47 H 1.08997 * 113.76531 * 89.75893 * 24 15 14 48 48 H 1.08998 * 115.55137 * 341.82502 * 26 25 4 49 49 H 1.09004 * 117.49753 * 359.97438 * 27 26 25 50 50 H 1.08995 * 117.50126 * 145.02070 * 27 26 25 51 51 H 1.08994 * 117.49807 * 214.97976 * 28 26 25 52 52 H 1.09007 * 117.49602 * 359.96975 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3232 1.4417 -1.1346 6 6 5.5714 1.4424 -0.7558 7 6 5.5996 1.4430 0.6567 8 6 6.8032 1.4433 1.5081 9 8 7.0297 0.4998 2.2411 10 7 7.6525 2.4892 1.4740 11 6 7.4152 3.5953 0.5433 12 6 8.2517 3.3867 -0.7207 13 6 8.8130 2.5200 2.3676 14 6 8.5242 1.9731 3.7774 15 7 8.9449 0.6608 3.2431 16 6 8.6837 -0.6404 3.5803 17 1 9.1269 -1.4450 3.0121 18 6 7.8492 -0.9255 4.6523 19 7 7.3087 0.0549 5.3444 20 14 7.4922 -2.7006 5.1118 21 1 8.7632 -3.3885 5.4536 22 1 6.5797 -2.7348 6.2829 23 1 6.8497 -3.3895 3.9639 24 6 9.7571 1.3157 2.1992 25 6 4.2891 1.4374 1.0905 26 6 3.8239 1.4316 2.5239 27 6 4.8460 1.8043 3.5998 28 6 4.3913 0.3508 3.4464 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9562 -0.8900 36 1 6.4325 1.4417 -1.4078 37 1 6.3584 3.6271 0.2784 38 1 7.6997 4.5354 1.0161 39 1 9.3027 3.2890 -0.4489 40 1 7.9222 2.4806 -1.2290 41 1 8.1262 4.2420 -1.3848 42 1 9.3248 3.4824 2.3665 43 1 9.1886 2.3678 4.5463 44 1 7.4721 2.0174 4.0589 45 1 6.7253 -0.1443 6.0933 46 1 9.6874 0.8360 1.2230 47 1 10.7842 1.5168 2.5035 48 1 2.7902 1.7381 2.6840 49 1 5.8549 2.0534 3.2708 50 1 4.4846 2.3557 4.4678 51 1 3.7309 -0.0536 4.2135 52 1 5.1006 -0.3564 3.0163 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957113246.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:33 Heat of formation + Delta-G solvation = 154.789966 kcal Electronic energy + Delta-G solvation = -33721.537080 eV Core-core repulsion = 29727.121159 eV Total energy + Delta-G solvation = -3994.415921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.55095 -40.88463 -38.16857 -37.51788 -36.28721 -36.04950 -33.73512 -32.47479 -31.00917 -30.76441 -28.93564 -27.48203 -26.35639 -25.41550 -24.41394 -23.87040 -23.21842 -23.02535 -22.56333 -21.50954 -20.29031 -19.02730 -18.44872 -18.11989 -17.39859 -16.70499 -16.51968 -16.19009 -15.96259 -15.75493 -15.55644 -15.46088 -15.30012 -14.89196 -14.77044 -14.27372 -14.24193 -14.05172 -13.96516 -13.26643 -13.14351 -13.01751 -12.96409 -12.82929 -12.77136 -12.47123 -12.44213 -12.37183 -12.25028 -12.14549 -12.00385 -11.88643 -11.80647 -11.67042 -11.59170 -11.32132 -11.15907 -11.06058 -10.57567 -10.11006 -9.93163 -9.25950 -9.08563 -8.19839 -7.47471 -4.67231 0.69551 1.44411 1.46291 1.48241 1.51956 1.53180 2.33916 2.54116 2.69820 3.13765 3.45083 3.55487 3.66658 3.75695 3.86190 3.93355 3.99246 4.03558 4.06654 4.19726 4.24411 4.25410 4.33342 4.41186 4.50952 4.59401 4.62387 4.71554 4.75186 4.77716 4.80196 4.89128 4.94789 4.95759 5.03964 5.08286 5.10561 5.11489 5.14316 5.19063 5.32287 5.35475 5.44275 5.49377 5.51283 5.56771 5.64198 5.91164 6.00942 6.25066 6.37760 6.66915 6.97799 7.31353 8.01136 8.06152 8.98895 9.68839 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009876 B = 0.005410 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.470972 B = 5173.914536 C = 7075.813231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.125 3.875 4 N -0.357 5.357 5 N -0.314 5.314 6 C 0.076 3.924 7 C -0.289 4.289 8 C 0.547 3.453 9 O -0.452 6.452 10 N -0.596 5.596 11 C 0.112 3.888 12 C -0.162 4.162 13 C 0.123 3.877 14 C 0.148 3.852 15 N -0.597 5.597 16 C -0.169 4.169 17 H 0.043 0.957 18 C -0.029 4.029 19 N -0.919 5.919 20 Si 0.928 3.072 21 H -0.294 1.294 22 H -0.297 1.297 23 H -0.303 1.303 24 C 0.103 3.897 25 C 0.157 3.843 26 C -0.108 4.108 27 C -0.142 4.142 28 C -0.140 4.140 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.197 0.803 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.015 0.985 44 H 0.063 0.937 45 H 0.233 0.767 46 H 0.029 0.971 47 H 0.050 0.950 48 H 0.141 0.859 49 H 0.101 0.899 50 H 0.097 0.903 51 H 0.092 0.908 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 11.869 -12.443 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.005 3.995 4 N -0.137 5.137 5 N -0.134 5.134 6 C -0.110 4.110 7 C -0.304 4.304 8 C 0.332 3.668 9 O -0.321 6.321 10 N -0.332 5.332 11 C -0.010 4.010 12 C -0.220 4.220 13 C 0.017 3.983 14 C 0.022 3.978 15 N -0.322 5.322 16 C -0.299 4.299 17 H 0.061 0.939 18 C -0.223 4.223 19 N -0.569 5.569 20 Si 0.762 3.238 21 H -0.222 1.222 22 H -0.223 1.223 23 H -0.231 1.231 24 C -0.024 4.024 25 C 0.027 3.973 26 C -0.128 4.128 27 C -0.179 4.179 28 C -0.178 4.178 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.214 0.786 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.136 0.864 43 H 0.033 0.967 44 H 0.081 0.919 45 H 0.042 0.958 46 H 0.047 0.953 47 H 0.067 0.933 48 H 0.159 0.841 49 H 0.119 0.881 50 H 0.116 0.884 51 H 0.110 0.890 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.671 11.075 -12.904 20.625 hybrid contribution 0.686 -1.736 1.117 2.176 sum -10.984 9.339 -11.787 18.623 Atomic orbital electron populations 1.21653 0.92040 1.02908 1.03297 1.21880 0.98438 0.95363 1.01916 1.22144 0.72206 0.98986 1.06122 1.48536 1.07318 1.55636 1.02174 1.77003 1.01952 1.26186 1.08220 1.24093 0.95439 0.98249 0.93251 1.20306 0.93406 1.22255 0.94448 1.17855 0.82508 0.83658 0.82794 1.91461 1.71445 1.32888 1.36311 1.47534 1.25347 1.21157 1.39182 1.21564 1.00353 0.89190 0.89927 1.22204 1.00312 1.02155 0.97303 1.22713 0.86724 0.97775 0.91055 1.22595 0.99456 0.83766 0.91992 1.45619 1.52167 1.00489 1.33967 1.18457 1.21225 0.82010 1.08179 0.93862 1.24648 1.01035 0.97176 0.99444 1.69859 1.36645 1.28601 1.21822 0.85932 0.76911 0.84614 0.76361 1.22181 1.22299 1.23130 1.23090 0.94616 0.92396 0.92284 1.20565 0.89803 0.97443 0.89537 1.20666 0.99865 1.07621 0.84628 1.23038 0.98841 0.98159 0.97860 1.22683 1.01842 0.93164 1.00127 0.91035 0.92011 0.91113 0.92716 0.92968 0.86859 0.87022 0.78603 0.91124 0.89373 0.92477 0.93651 0.89771 0.86383 0.96702 0.91872 0.95755 0.95315 0.93273 0.84141 0.88121 0.88418 0.88960 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.91 71.98 0.71 -1.05 16 2 C -0.14 -2.61 6.26 30.59 0.19 -2.41 16 3 C 0.13 2.33 6.21 86.38 0.54 2.87 16 4 N -0.36 -9.87 3.58 -333.00 -1.19 -11.07 16 5 N -0.31 -9.43 12.50 -56.28 -0.70 -10.13 16 6 C 0.08 2.31 10.52 85.65 0.90 3.21 16 7 C -0.29 -10.14 4.36 -20.15 -0.09 -10.23 16 8 C 0.55 21.77 4.29 86.66 0.37 22.14 16 9 O -0.45 -22.58 7.72 -4.06 -0.03 -22.61 16 10 N -0.60 -19.72 2.73 -807.35 -2.20 -21.92 16 11 C 0.11 2.64 5.76 86.38 0.50 3.14 16 12 C -0.16 -3.16 10.13 71.98 0.73 -2.43 16 13 C 0.12 4.32 4.71 46.75 0.22 4.54 16 14 C 0.15 6.84 6.49 86.44 0.56 7.40 16 15 N -0.60 -30.70 2.05 -716.62 -1.47 -32.17 16 16 C -0.17 -9.94 8.54 84.03 0.72 -9.22 16 17 H 0.04 2.63 7.83 -2.91 -0.02 2.61 16 18 C -0.03 -1.71 5.14 84.86 0.44 -1.28 16 19 N -0.92 -53.75 11.39 21.65 0.25 -53.50 16 20 Si 0.93 49.23 29.55 68.60 2.03 51.25 16 21 H -0.29 -15.39 7.11 99.48 0.71 -14.68 16 22 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 23 H -0.30 -16.43 7.11 99.48 0.71 -15.73 16 24 C 0.10 4.22 8.35 86.49 0.72 4.95 16 25 C 0.16 5.09 6.66 42.14 0.28 5.37 16 26 C -0.11 -3.36 5.94 -11.54 -0.07 -3.42 16 27 C -0.14 -5.29 9.51 30.62 0.29 -4.99 16 28 C -0.14 -5.55 9.69 30.62 0.30 -5.25 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.62 7.13 -2.39 -0.02 1.60 16 35 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.20 5.12 6.08 -2.91 -0.02 5.10 16 37 H 0.07 1.75 6.11 -2.39 -0.01 1.73 16 38 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.04 0.97 5.84 -2.39 -0.01 0.96 16 41 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.12 3.19 8.05 -2.38 -0.02 3.17 16 43 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.06 3.23 4.55 -2.39 -0.01 3.21 16 45 H 0.23 13.68 8.31 -92.70 -0.77 12.91 16 46 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.14 3.27 7.23 -2.39 -0.02 3.25 16 49 H 0.10 4.30 2.64 -2.39 -0.01 4.29 16 50 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 51 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 52 H 0.07 3.69 6.50 -2.38 -0.02 3.67 16 Total: -1.00 -73.87 397.49 4.91 -68.96 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.92 Total: 17.87 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 7.31 Total: 13.32 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -5.32 Total: -128.80 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.03 Total: -22.61 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.25 kcal Total: -73.87 4.91 -68.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957113246.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.754 kcal (2) G-P(sol) polarization free energy of solvation -73.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds