Wall clock time and date at job start Wed Apr 1 2020 04:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47447 * 2 1 4 4 H 1.09002 * 109.47108 * 305.00063 * 3 2 1 5 5 C 1.53000 * 109.47137 * 65.00126 * 3 2 1 6 6 N 1.46499 * 109.47018 * 185.00228 * 3 2 1 7 7 N 1.28444 * 125.18795 * 305.17341 * 6 3 2 8 8 C 1.30865 * 110.92380 * 179.97438 * 7 6 3 9 9 C 1.39676 * 107.86556 * 359.97438 * 8 7 6 10 10 C 1.36599 * 125.19168 * 125.13727 * 6 3 2 11 11 C 1.47161 * 126.88085 * 359.97438 * 10 6 3 12 12 O 1.21633 * 120.00416 * 354.79329 * 11 10 6 13 13 N 1.34782 * 120.00145 * 174.79651 * 11 10 6 14 14 C 1.46495 * 120.00100 * 185.11502 * 13 11 10 15 15 C 1.53958 * 113.57555 * 252.71677 * 14 13 11 16 16 C 1.52911 * 86.77953 * 220.66206 * 15 14 13 17 17 C 1.52917 * 121.13358 * 150.61569 * 16 15 14 18 18 C 1.53954 * 86.77893 * 100.82290 * 17 16 15 19 19 N 1.46494 * 113.57453 * 139.33444 * 18 17 16 20 20 C 1.36939 * 119.99762 * 107.28063 * 19 18 17 21 21 H 1.08000 * 120.00191 * 0.02562 * 20 19 18 22 22 C 1.38819 * 119.99899 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99539 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99920 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47071 * 90.00191 * 24 22 20 26 26 H 1.48507 * 109.46975 * 209.99797 * 24 22 20 27 27 H 1.48494 * 109.47322 * 329.99704 * 24 22 20 28 28 C 1.52908 * 121.13994 * 259.17716 * 16 15 14 29 29 C 1.52912 * 88.04148 * 24.90055 * 16 15 14 30 30 H 1.09006 * 109.47088 * 299.99995 * 1 2 3 31 31 H 1.08995 * 109.47462 * 59.99591 * 1 2 3 32 32 H 1.08993 * 109.47377 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46687 * 239.99775 * 2 1 3 34 34 H 1.09007 * 109.47018 * 120.00483 * 2 1 3 35 35 H 1.08996 * 109.47296 * 300.00452 * 5 3 2 36 36 H 1.09002 * 109.47173 * 59.99976 * 5 3 2 37 37 H 1.08997 * 109.47510 * 179.97438 * 5 3 2 38 38 H 1.08005 * 126.06674 * 180.02562 * 8 7 6 39 39 H 1.07997 * 127.32425 * 180.02562 * 9 8 7 40 40 H 0.97005 * 119.99465 * 5.11273 * 13 11 10 41 41 H 1.08992 * 112.82528 * 23.90937 * 14 13 11 42 42 H 1.08995 * 113.66682 * 335.13796 * 15 14 13 43 43 H 1.08997 * 113.66064 * 106.19595 * 15 14 13 44 44 H 1.08998 * 113.65928 * 215.29461 * 17 16 15 45 45 H 1.08998 * 113.65740 * 346.34993 * 17 16 15 46 46 H 1.08990 * 113.58198 * 270.12685 * 18 17 16 47 47 H 0.97000 * 120.00522 * 287.27818 * 19 18 17 48 48 H 0.97000 * 119.99266 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.65904 * 13.65573 * 28 16 15 50 50 H 1.09003 * 113.65651 * 144.61678 * 28 16 15 51 51 H 1.09000 * 113.66091 * 220.62343 * 29 16 15 52 52 H 1.09003 * 113.66174 * 89.57653 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 7 3.5001 1.4441 -0.1204 7 7 4.3075 0.8155 0.6559 8 6 5.5501 1.0098 0.2942 9 6 5.5448 1.8449 -0.8254 10 6 4.2104 2.1137 -1.0759 11 6 3.6659 2.9516 -2.1562 12 8 2.4630 3.0265 -2.3203 13 7 4.5000 3.6359 -2.9640 14 6 3.9577 4.5564 -3.9663 15 6 4.0735 4.0331 -5.4096 16 6 4.4531 5.4606 -5.8051 17 6 5.3707 5.7331 -6.9976 18 6 4.0951 6.0690 -7.7915 19 7 4.2429 7.2286 -8.6745 20 6 4.3198 7.0514 -10.0302 21 1 4.2710 6.0569 -10.4484 22 6 4.4593 8.1502 -10.8670 23 7 4.5326 7.9798 -12.1700 24 14 4.5429 9.8704 -10.1436 25 1 5.9581 10.2197 -9.8596 26 1 3.9780 10.8431 -11.1132 27 1 3.7593 9.9160 -8.8831 28 6 3.4314 6.4025 -6.4430 29 6 4.9370 5.6735 -4.3703 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5491 2.1252 1.3970 36 1 2.0700 1.5874 2.1492 37 1 1.9991 3.1540 1.3076 38 1 6.4244 0.5970 0.7754 39 1 6.4001 2.2046 -1.3781 40 1 5.4594 3.5188 -2.8816 41 1 2.9624 4.9202 -3.7117 42 1 4.8782 3.3115 -5.5501 43 1 3.1254 3.6998 -5.8314 44 1 6.0337 6.5861 -6.8534 45 1 5.8912 4.8468 -7.3605 46 1 3.6543 5.2078 -8.2932 47 1 4.2864 8.1219 -8.2989 48 1 4.6305 8.7476 -12.7547 49 1 2.4028 6.0511 -6.3629 50 1 3.5485 7.4435 -6.1417 51 1 4.6787 6.6505 -3.9620 52 1 5.9846 5.4130 -4.2187 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963909420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:26 Heat of formation + Delta-G solvation = 91.021544 kcal Electronic energy + Delta-G solvation = -29959.951703 eV Core-core repulsion = 25962.770575 eV Total energy + Delta-G solvation = -3997.181128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.91953 -40.65866 -39.17076 -36.92736 -36.04940 -33.89287 -32.48732 -31.93073 -30.99369 -30.04054 -29.37717 -25.89491 -25.46858 -25.35464 -24.68536 -23.54230 -22.69066 -21.97922 -20.85033 -20.40541 -19.79040 -18.39999 -17.90628 -17.28462 -16.73410 -16.31249 -16.07076 -15.56875 -15.41760 -14.98029 -14.84864 -14.75260 -14.49458 -14.08584 -14.05886 -13.69087 -13.48625 -13.10083 -12.73334 -12.69548 -12.68981 -12.53058 -12.36599 -12.22726 -12.14822 -11.87316 -11.71900 -11.49042 -11.29659 -11.16792 -11.11188 -11.07280 -10.77769 -10.34588 -10.23722 -10.05875 -9.90713 -9.70185 -9.59444 -9.48280 -9.39118 -9.19236 -8.89276 -7.26617 -5.78559 -3.13809 0.92246 1.99739 2.29310 2.86464 2.90348 3.36137 3.38835 3.44143 4.03305 4.20101 4.35931 4.43931 4.49210 4.52430 4.57502 4.64419 4.71182 4.76064 4.76652 4.88835 4.92893 5.06912 5.17962 5.22665 5.27101 5.33726 5.35255 5.42715 5.47265 5.48472 5.55537 5.58550 5.62523 5.73481 5.75498 5.79334 5.81386 5.82129 5.94006 6.02661 6.09104 6.15023 6.21074 6.28484 6.36201 6.43260 6.53616 6.76635 6.98376 7.12286 7.72319 7.81846 7.98562 8.41408 9.19410 9.92095 10.12126 11.39757 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.001793 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.287875 B =15609.396614 C =16098.520709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.128 3.872 4 H 0.138 0.862 5 C -0.161 4.161 6 N -0.247 5.247 7 N -0.274 5.274 8 C -0.007 4.007 9 C -0.190 4.190 10 C -0.040 4.040 11 C 0.591 3.409 12 O -0.540 6.540 13 N -0.701 5.701 14 C 0.125 3.875 15 C -0.123 4.123 16 C -0.102 4.102 17 C -0.148 4.148 18 C 0.174 3.826 19 N -0.738 5.738 20 C -0.247 4.247 21 H 0.091 0.909 22 C 0.003 3.997 23 N -0.933 5.933 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.132 4.132 29 C -0.129 4.129 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.185 0.815 39 H 0.160 0.840 40 H 0.404 0.596 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.362 0.638 48 H 0.259 0.741 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.074 0.926 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -14.631 29.871 33.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.029 3.971 4 H 0.155 0.845 5 C -0.218 4.218 6 N -0.036 5.036 7 N -0.106 5.106 8 C -0.182 4.182 9 C -0.219 4.219 10 C -0.169 4.169 11 C 0.377 3.623 12 O -0.418 6.418 13 N -0.351 5.351 14 C 0.021 3.979 15 C -0.162 4.162 16 C -0.103 4.103 17 C -0.189 4.189 18 C 0.063 3.937 19 N -0.377 5.377 20 C -0.376 4.376 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.581 5.581 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.171 4.171 29 C -0.168 4.168 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.202 0.798 39 H 0.177 0.823 40 H 0.239 0.761 41 H 0.134 0.866 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.093 0.907 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.806 -15.172 30.279 33.984 hybrid contribution 1.322 1.597 -0.105 2.076 sum -1.483 -13.575 30.175 33.121 Atomic orbital electron populations 1.21794 0.93991 1.02556 1.02578 1.21800 0.96972 0.94287 1.03470 1.22231 0.72795 0.99477 1.02640 0.84496 1.22170 1.02750 1.00861 0.96042 1.46026 1.07580 1.31599 1.18349 1.73147 1.01762 1.17322 1.18418 1.23572 0.94422 1.02146 0.98091 1.22256 0.94806 1.03966 1.00879 1.21456 0.92264 1.05385 0.97793 1.16985 0.86119 0.78865 0.80324 1.90733 1.14530 1.64481 1.72041 1.45762 1.09887 1.43587 1.35830 1.22732 0.99176 0.89743 0.86277 1.23151 1.02406 0.96079 0.94549 1.22067 0.99588 0.95587 0.93095 1.23610 0.98905 1.01072 0.95303 1.21521 0.93020 0.91292 0.87860 1.42768 1.87933 1.03109 1.03932 1.19149 1.42455 0.95272 0.80772 0.89153 1.24705 1.01962 0.97406 0.95164 1.69708 1.56898 1.29699 1.01784 0.86543 0.77821 0.85930 0.78203 1.21090 1.21738 1.20315 1.23241 0.97477 0.98398 0.97990 1.23197 0.98926 0.98255 0.96391 0.92015 0.91980 0.91855 0.91400 0.90528 0.89901 0.91263 0.92044 0.79760 0.82269 0.76116 0.86638 0.89564 0.90661 0.90349 0.92188 0.89939 0.80508 0.93061 0.91691 0.90227 0.90735 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 37.16 0.36 -0.54 16 2 C -0.13 -0.98 5.50 -26.73 -0.15 -1.12 16 3 C 0.13 1.15 3.02 -67.93 -0.21 0.95 16 4 H 0.14 1.43 5.32 -51.93 -0.28 1.16 16 5 C -0.16 -1.19 9.20 37.16 0.34 -0.85 16 6 N -0.25 -2.54 3.09 -50.69 -0.16 -2.70 16 7 N -0.27 -2.78 11.56 30.59 0.35 -2.43 16 8 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 9 C -0.19 -1.49 10.50 -38.98 -0.41 -1.90 16 10 C -0.04 -0.41 6.96 -82.06 -0.57 -0.98 16 11 C 0.59 6.50 7.79 -12.64 -0.10 6.40 16 12 O -0.54 -7.38 14.03 5.25 0.07 -7.31 16 13 N -0.70 -6.22 5.34 -54.01 -0.29 -6.51 16 14 C 0.12 1.27 4.21 -66.95 -0.28 0.98 16 15 C -0.12 -1.37 7.64 -26.28 -0.20 -1.57 16 16 C -0.10 -1.27 1.11 -154.71 -0.17 -1.44 16 17 C -0.15 -2.29 7.64 -26.28 -0.20 -2.49 16 18 C 0.17 3.22 4.48 -66.95 -0.30 2.92 16 19 N -0.74 -17.14 5.20 -52.48 -0.27 -17.41 16 20 C -0.25 -6.89 10.45 -15.06 -0.16 -7.05 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 23 N -0.93 -29.19 13.97 55.49 0.78 -28.42 16 24 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 28 C -0.13 -1.96 7.59 -26.28 -0.20 -2.16 16 29 C -0.13 -1.28 7.59 -26.28 -0.20 -1.48 16 30 H 0.06 0.30 6.57 -51.93 -0.34 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.46 6.56 -51.93 -0.34 0.12 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.19 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.16 0.76 7.58 -52.49 -0.40 0.36 16 40 H 0.40 2.56 7.76 -40.82 -0.32 2.24 16 41 H 0.12 1.34 7.53 -51.93 -0.39 0.95 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 47 H 0.36 8.25 5.78 -40.82 -0.24 8.01 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 49 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 51 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 LS Contribution 416.13 15.07 6.27 6.27 Total: -1.00 -33.44 416.13 -9.36 -42.80 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -8.65 Total: 9.07 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.75 Total: -10.59 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.41 Total: -57.46 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.07 Total: -7.31 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.44 -9.36 -42.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963909420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.817 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds