Wall clock time and date at job start Wed Apr 1 2020 04:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47264 * 2 1 4 4 N 1.46497 * 109.47196 * 179.97438 * 3 2 1 5 5 N 1.39934 * 125.75006 * 270.02472 * 4 3 2 6 6 C 1.30452 * 108.89289 * 179.73423 * 5 4 3 7 7 C 1.41297 * 108.02322 * 0.37794 * 6 5 4 8 8 C 1.47424 * 126.41484 * 179.87954 * 7 6 5 9 9 O 1.21602 * 119.99938 * 179.69451 * 8 7 6 10 10 N 1.34782 * 120.00188 * 359.69345 * 8 7 6 11 11 C 1.46497 * 120.00156 * 179.97438 * 10 8 7 12 12 C 1.53949 * 113.57877 * 154.99733 * 11 10 8 13 13 C 1.52903 * 86.78075 * 89.87216 * 12 11 10 14 14 C 1.52910 * 121.13886 * 259.17953 * 13 12 11 15 15 C 1.53950 * 86.78717 * 209.38108 * 14 13 12 16 16 N 1.46496 * 113.58021 * 139.33339 * 15 14 13 17 17 C 1.36940 * 119.99523 * 107.28284 * 16 15 14 18 18 H 1.07998 * 120.00443 * 359.97438 * 17 16 15 19 19 C 1.38824 * 119.99745 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99935 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99860 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47377 * 90.00218 * 21 19 17 23 23 H 1.48506 * 109.47140 * 209.99757 * 21 19 17 24 24 H 1.48498 * 109.47421 * 330.00035 * 21 19 17 25 25 C 1.52917 * 121.14033 * 150.62039 * 13 12 11 26 26 C 1.52907 * 88.04638 * 24.89875 * 13 12 11 27 27 C 1.34261 * 125.75282 * 89.99755 * 4 3 2 28 28 C 1.50700 * 126.29242 * 0.04471 * 27 4 3 29 29 H 1.09002 * 109.47057 * 60.00242 * 1 2 3 30 30 H 1.08994 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47132 * 300.00296 * 1 2 3 32 32 H 1.09003 * 109.47132 * 239.99704 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99758 * 2 1 3 34 34 H 1.08997 * 109.46882 * 59.99743 * 3 2 1 35 35 H 1.09002 * 109.46886 * 299.99863 * 3 2 1 36 36 H 1.08005 * 125.98940 * 180.26591 * 6 5 4 37 37 H 0.96996 * 119.99710 * 359.97438 * 10 8 7 38 38 H 1.09008 * 112.87605 * 23.85967 * 11 10 8 39 39 H 1.08999 * 113.66653 * 335.39910 * 12 11 10 40 40 H 1.09000 * 113.66492 * 204.34103 * 12 11 10 41 41 H 1.09007 * 113.66009 * 323.85167 * 14 13 12 42 42 H 1.09002 * 113.66292 * 94.90250 * 14 13 12 43 43 H 1.09001 * 113.57502 * 270.13001 * 15 14 13 44 44 H 0.96998 * 120.00298 * 287.28307 * 16 15 14 45 45 H 0.96993 * 120.00000 * 180.02562 * 20 19 17 46 46 H 1.09001 * 113.65915 * 265.09197 * 25 13 12 47 47 H 1.08997 * 113.66386 * 36.04920 * 25 13 12 48 48 H 1.08995 * 113.66604 * 89.57097 * 26 13 12 49 49 H 1.08996 * 113.66613 * 220.63169 * 26 13 12 50 50 H 1.09003 * 109.46716 * 270.00088 * 28 27 4 51 51 H 1.08998 * 109.47144 * 29.99575 * 28 27 4 52 52 H 1.08995 * 109.46934 * 149.99616 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.3221 1.4422 1.1366 6 6 5.5707 1.4365 0.7589 7 6 5.6001 1.4419 -0.6538 8 6 6.8044 1.4408 -1.5041 9 8 6.6937 1.4402 -2.7151 10 7 8.0282 1.4405 -0.9393 11 6 9.2249 1.4389 -1.7842 12 6 10.4660 2.0350 -1.0954 13 6 10.7661 0.6190 -0.6026 14 6 10.4282 0.1907 0.8258 15 6 11.6159 -0.7833 0.7224 16 7 12.4212 -0.8574 1.9439 17 6 12.3535 -1.9680 2.7422 18 1 11.7063 -2.7891 2.4714 19 6 13.1170 -2.0385 3.8995 20 7 13.9062 -1.0381 4.2292 21 14 13.0242 -3.5531 4.9887 22 1 14.0445 -4.5399 4.5525 23 1 13.2819 -3.1653 6.3989 24 1 11.6724 -4.1584 4.8810 25 6 12.2015 0.1591 -0.3449 26 6 9.9689 0.0911 -1.7958 27 6 4.2900 1.4423 -1.0886 28 6 3.8260 1.4430 -2.5224 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.4313 1.4308 1.4115 37 1 8.1165 1.4413 0.0266 38 1 9.0416 1.8443 -2.7794 39 1 10.2279 2.7355 -0.2949 40 1 11.2093 2.4225 -1.7921 41 1 10.5721 0.9792 1.5646 42 1 9.4620 -0.3056 0.9168 43 1 11.3425 -1.7647 0.3348 44 1 13.0022 -0.1198 2.1873 45 1 14.4399 -1.0875 5.0376 46 1 12.6519 -0.3626 -1.1894 47 1 12.8442 0.9390 0.0632 48 1 10.5724 -0.0678 -2.6894 49 1 9.3336 -0.7612 -1.5549 50 1 3.7135 0.4154 -2.8683 51 1 2.8677 1.9573 -2.5940 52 1 4.5612 1.9565 -3.1419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965565879.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:42 Heat of formation + Delta-G solvation = 80.558041 kcal Electronic energy + Delta-G solvation = -30071.427567 eV Core-core repulsion = 26073.792708 eV Total energy + Delta-G solvation = -3997.634859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.74561 -40.49167 -38.67024 -35.89521 -35.73836 -33.51291 -32.75067 -32.21698 -31.36763 -29.55887 -27.66288 -26.78549 -25.69288 -25.16694 -24.30308 -23.22975 -22.56191 -21.94802 -20.61876 -19.89301 -19.63755 -17.82499 -17.75073 -17.01127 -16.27798 -15.93213 -15.82594 -15.55706 -15.16660 -14.66355 -14.60930 -14.57473 -14.19818 -13.96288 -13.72357 -13.45687 -13.38577 -13.09658 -12.96383 -12.76622 -12.59825 -12.52593 -12.37857 -12.29972 -11.97569 -11.90115 -11.60430 -11.40050 -11.24369 -11.04260 -10.96738 -10.80094 -10.74940 -10.18658 -9.94117 -9.90301 -9.75550 -9.67349 -9.64843 -9.30368 -9.03617 -8.83787 -8.70118 -6.93171 -5.76384 -3.04539 1.29328 1.98906 2.02270 3.24370 3.40107 3.44048 3.49496 3.50944 4.04412 4.21098 4.29952 4.47746 4.58107 4.59316 4.67758 4.72083 4.77479 4.81545 4.87215 4.88771 4.99878 5.03538 5.11323 5.23018 5.25508 5.40392 5.44168 5.48215 5.49448 5.57660 5.66899 5.71973 5.80829 5.84347 5.88399 5.94831 6.00284 6.04788 6.16427 6.19341 6.25987 6.30844 6.40169 6.43807 6.57690 6.60275 6.71787 6.98570 7.17023 7.31617 7.61342 7.71717 8.30579 8.42638 9.53617 10.12757 10.47056 11.46080 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.002290 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.501226 B =12224.262365 C =14241.198352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.127 3.873 4 N -0.361 5.361 5 N -0.296 5.296 6 C 0.086 3.914 7 C -0.298 4.298 8 C 0.599 3.401 9 O -0.554 6.554 10 N -0.704 5.704 11 C 0.126 3.874 12 C -0.133 4.133 13 C -0.104 4.104 14 C -0.144 4.144 15 C 0.169 3.831 16 N -0.713 5.713 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.139 4.139 26 C -0.127 4.127 27 C 0.157 3.843 28 C -0.099 4.099 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.190 0.810 37 H 0.402 0.598 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.068 0.932 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.422 8.145 -14.033 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.007 3.993 4 N -0.140 5.140 5 N -0.114 5.114 6 C -0.102 4.102 7 C -0.313 4.313 8 C 0.387 3.613 9 O -0.433 6.433 10 N -0.354 5.354 11 C 0.020 3.980 12 C -0.171 4.171 13 C -0.105 4.105 14 C -0.185 4.185 15 C 0.057 3.943 16 N -0.351 5.351 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.178 4.178 26 C -0.165 4.165 27 C 0.025 3.975 28 C -0.157 4.157 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.207 0.793 37 H 0.237 0.763 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.089 0.911 50 H 0.104 0.896 51 H 0.087 0.913 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.461 7.975 -13.744 30.013 hybrid contribution 0.853 -0.608 0.777 1.304 sum -24.608 7.367 -12.967 28.774 Atomic orbital electron populations 1.21696 0.94041 1.02717 1.02258 1.21942 0.96882 0.95489 1.03742 1.21895 0.73759 0.98898 1.04791 1.48556 1.06686 1.55395 1.03403 1.77222 1.01890 1.24987 1.07299 1.24094 0.95453 0.96795 0.93891 1.19987 0.92878 1.24913 0.93515 1.17158 0.82138 0.75116 0.86839 1.90703 1.86751 1.51730 1.14141 1.45440 1.04637 1.75043 1.10254 1.21813 0.83720 0.97479 0.94946 1.23160 0.96463 0.97140 1.00368 1.22350 0.97668 0.94787 0.95661 1.23606 1.00844 1.01186 0.92830 1.21507 0.90556 0.94911 0.87282 1.42421 1.49845 1.20284 1.22544 1.19309 1.20402 0.95682 1.01844 0.91174 1.24758 0.99548 0.97995 0.98721 1.69656 1.30633 1.31296 1.26534 0.86204 0.77562 0.82483 0.80040 1.21742 1.21796 1.20758 1.23279 0.94714 1.00080 0.99730 1.23127 0.98118 0.97281 0.97984 1.21502 0.90087 0.94827 0.91100 1.20685 1.02356 1.04123 0.88503 0.92276 0.91779 0.92156 0.91182 0.90673 0.88279 0.88659 0.79277 0.76310 0.88360 0.91070 0.89022 0.90191 0.92772 0.90919 0.78132 0.93520 0.92299 0.90305 0.89318 0.91130 0.89565 0.91307 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.91 37.16 0.37 -0.19 16 2 C -0.14 -0.80 6.26 -26.73 -0.17 -0.97 16 3 C 0.13 0.78 6.21 -4.04 -0.03 0.75 16 4 N -0.36 -3.56 3.58 -56.61 -0.20 -3.76 16 5 N -0.30 -3.54 12.50 30.86 0.39 -3.16 16 6 C 0.09 0.97 11.50 -16.98 -0.20 0.77 16 7 C -0.30 -3.56 6.13 -105.07 -0.64 -4.21 16 8 C 0.60 7.87 7.81 -12.52 -0.10 7.77 16 9 O -0.55 -8.47 14.44 5.28 0.08 -8.40 16 10 N -0.70 -8.34 5.25 -53.93 -0.28 -8.63 16 11 C 0.13 1.51 4.32 -66.95 -0.29 1.22 16 12 C -0.13 -1.55 7.59 -26.29 -0.20 -1.75 16 13 C -0.10 -1.42 1.02 -154.71 -0.16 -1.58 16 14 C -0.14 -2.34 6.97 -26.28 -0.18 -2.53 16 15 C 0.17 3.31 4.48 -66.95 -0.30 3.01 16 16 N -0.71 -17.75 5.40 -52.47 -0.28 -18.03 16 17 C -0.24 -6.69 9.97 -15.05 -0.15 -6.84 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 21 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.14 -2.25 7.59 -26.28 -0.20 -2.45 16 26 C -0.13 -1.60 7.64 -26.28 -0.20 -1.80 16 27 C 0.16 1.64 7.01 -81.60 -0.57 1.07 16 28 C -0.10 -0.78 9.57 36.01 0.34 -0.43 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.37 7.02 -51.93 -0.36 0.00 16 36 H 0.19 1.70 7.50 -52.48 -0.39 1.31 16 37 H 0.40 4.33 6.96 -40.82 -0.28 4.05 16 38 H 0.10 1.22 7.47 -51.92 -0.39 0.84 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 42 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 43 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 44 H 0.38 10.17 7.92 -40.82 -0.32 9.84 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 48 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.07 0.35 7.05 -51.93 -0.37 -0.01 16 52 H 0.11 1.02 6.50 -51.93 -0.34 0.69 16 LS Contribution 421.29 15.07 6.35 6.35 Total: -1.00 -33.51 421.29 -9.78 -43.29 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -8.76 Total: 10.98 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.76 Total: -8.65 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.34 Total: -60.99 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.08 Total: -8.40 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.51 -9.78 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965565879.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.849 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds