Wall clock time and date at job start Wed Apr 1 2020 04:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46938 * 2 1 4 4 N 1.46500 * 109.47364 * 180.02562 * 3 2 1 5 5 C 1.34258 * 125.75630 * 125.27352 * 4 3 2 6 6 C 1.38050 * 107.41916 * 180.18451 * 5 4 3 7 7 C 1.47424 * 126.41554 * 179.86951 * 6 5 4 8 8 O 1.21602 * 119.99938 * 179.69212 * 7 6 5 9 9 N 1.34782 * 120.00188 * 359.69105 * 7 6 5 10 10 C 1.46497 * 120.00156 * 179.97438 * 9 7 6 11 11 C 1.53949 * 113.57877 * 154.99733 * 10 9 7 12 12 C 1.52903 * 86.78075 * 89.87216 * 11 10 9 13 13 C 1.52910 * 121.13886 * 259.17953 * 12 11 10 14 14 C 1.53950 * 86.78717 * 209.38108 * 13 12 11 15 15 N 1.46496 * 113.58021 * 139.33339 * 14 13 12 16 16 C 1.36940 * 119.99523 * 107.28284 * 15 14 13 17 17 H 1.07998 * 120.00443 * 359.97438 * 16 15 14 18 18 C 1.38824 * 119.99745 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99935 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99860 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47377 * 90.00218 * 20 18 16 22 22 H 1.48506 * 109.47140 * 209.99757 * 20 18 16 23 23 H 1.48498 * 109.47421 * 330.00035 * 20 18 16 24 24 C 1.52917 * 121.14033 * 150.62039 * 12 11 10 25 25 C 1.52907 * 88.04638 * 24.89875 * 12 11 10 26 26 C 1.41291 * 107.16797 * 359.61135 * 6 5 4 27 27 C 1.50704 * 125.98780 * 180.24316 * 26 6 5 28 28 N 1.30450 * 108.02211 * 0.23704 * 26 6 5 29 29 H 1.09003 * 109.47254 * 299.99149 * 1 2 3 30 30 H 1.08996 * 109.47900 * 59.99794 * 1 2 3 31 31 H 1.09008 * 109.47126 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47254 * 240.00851 * 2 1 3 33 33 H 1.08996 * 109.47900 * 120.00206 * 2 1 3 34 34 H 1.09004 * 109.47239 * 60.00841 * 3 2 1 35 35 H 1.08995 * 109.47811 * 300.00339 * 3 2 1 36 36 H 1.07998 * 126.29314 * 0.03709 * 5 4 3 37 37 H 0.96996 * 119.99710 * 359.97438 * 9 7 6 38 38 H 1.09008 * 112.87605 * 23.85967 * 10 9 7 39 39 H 1.08999 * 113.66653 * 335.39910 * 11 10 9 40 40 H 1.09000 * 113.66492 * 204.34103 * 11 10 9 41 41 H 1.09007 * 113.66009 * 323.85167 * 13 12 11 42 42 H 1.09002 * 113.66292 * 94.90250 * 13 12 11 43 43 H 1.09001 * 113.57502 * 270.13001 * 14 13 12 44 44 H 0.96998 * 120.00298 * 287.28307 * 15 14 13 45 45 H 0.96993 * 120.00000 * 180.02562 * 19 18 16 46 46 H 1.09001 * 113.65915 * 265.09197 * 24 12 11 47 47 H 1.08997 * 113.66386 * 36.04920 * 24 12 11 48 48 H 1.08995 * 113.66604 * 89.57097 * 25 12 11 49 49 H 1.08996 * 113.66613 * 220.63169 * 25 12 11 50 50 H 1.09001 * 109.47084 * 89.99635 * 27 26 6 51 51 H 1.09001 * 109.46782 * 209.99672 * 27 26 6 52 52 H 1.09003 * 109.46846 * 329.99398 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2890 2.0720 -0.8903 6 6 5.5996 1.8177 -0.5388 7 6 6.8032 2.3058 -1.2363 8 8 7.9077 2.0135 -0.8199 9 7 6.6794 3.0759 -2.3355 10 6 7.8755 3.5613 -3.0282 11 6 7.6399 3.8760 -4.5167 12 6 7.2771 5.2929 -4.0709 13 6 5.8183 5.7360 -3.9542 14 6 6.3135 7.1557 -4.2847 15 7 5.4310 7.8864 -5.1976 16 6 4.6571 8.9132 -4.7262 17 1 4.6971 9.1840 -3.6815 18 6 3.8212 9.6060 -5.5914 19 7 3.7729 9.2763 -6.8647 20 14 2.7651 11.0061 -4.9483 21 1 3.5181 12.2819 -5.0514 22 1 1.5215 11.0989 -5.7547 23 1 2.4160 10.7508 -3.5277 24 6 7.5140 6.4949 -4.9861 25 6 8.1362 5.0651 -2.8267 26 6 5.5713 1.0072 0.6181 27 6 6.7728 0.4845 1.3628 28 7 4.3230 0.7907 0.9289 29 1 -0.3634 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.9558 2.6658 -1.7286 37 1 5.7984 3.3087 -2.6678 38 1 8.7519 2.9387 -2.8476 39 1 6.8052 3.3275 -4.9531 40 1 8.5444 3.8263 -5.1229 41 1 5.1692 5.3099 -4.7192 42 1 5.4105 5.6380 -2.9481 43 1 6.5885 7.7373 -3.4048 44 1 5.3948 7.6430 -6.1358 45 1 3.1892 9.7606 -7.4692 46 1 8.4610 7.0031 -4.8043 47 1 7.3431 6.2817 -6.0413 48 1 9.1802 5.3495 -2.9578 49 1 7.6980 5.4665 -1.9129 50 1 7.0632 1.2001 2.1319 51 1 6.5247 -0.4692 1.8288 52 1 7.5993 0.3444 0.6661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965566578.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:38 Heat of formation + Delta-G solvation = 80.742229 kcal Electronic energy + Delta-G solvation = -30119.279904 eV Core-core repulsion = 26121.653032 eV Total energy + Delta-G solvation = -3997.626872 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68367 -40.52106 -38.68826 -35.98024 -35.67402 -33.56469 -32.81669 -32.31118 -30.37053 -29.47614 -29.05929 -26.15951 -25.72711 -25.21501 -24.32765 -23.26099 -22.27069 -21.97120 -20.65323 -19.89127 -19.61576 -17.98211 -17.69753 -17.06549 -16.47959 -16.13894 -15.75005 -15.34285 -15.19675 -14.71612 -14.63746 -14.50538 -14.03638 -13.97599 -13.79900 -13.55732 -13.30817 -13.03752 -12.89627 -12.61341 -12.54696 -12.40061 -12.36808 -12.14161 -12.01174 -11.79581 -11.65618 -11.39106 -11.28398 -11.01471 -10.95888 -10.84470 -10.79470 -10.22935 -9.98451 -9.92338 -9.79337 -9.69119 -9.57855 -9.34560 -9.05718 -8.88645 -8.75018 -6.98301 -5.81274 -3.09617 1.28360 2.00255 2.04029 3.19524 3.39276 3.39757 3.45360 3.46587 3.95424 4.31418 4.35838 4.47230 4.54646 4.63581 4.69011 4.73491 4.78545 4.83061 4.94866 4.96802 5.00252 5.13959 5.19025 5.25519 5.35832 5.44419 5.50626 5.54556 5.56968 5.69681 5.73879 5.78632 5.81363 5.82590 5.84590 5.90240 5.96339 6.00622 6.12208 6.21696 6.26347 6.34262 6.36619 6.38032 6.52352 6.55945 6.68327 6.93718 7.11859 7.35091 7.58813 7.66800 8.29040 8.37771 9.48748 10.07762 10.42086 11.41208 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008402 B = 0.002628 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.884255 B =10651.386100 C =13225.146979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.127 3.873 4 N -0.356 5.356 5 C 0.103 3.897 6 C -0.290 4.290 7 C 0.597 3.403 8 O -0.545 6.545 9 N -0.707 5.707 10 C 0.125 3.875 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.144 4.144 14 C 0.170 3.830 15 N -0.713 5.713 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.139 4.139 25 C -0.126 4.126 26 C 0.131 3.869 27 C -0.076 4.076 28 N -0.301 5.301 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.183 0.817 37 H 0.399 0.601 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.070 0.930 50 H 0.079 0.921 51 H 0.069 0.931 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -20.121 12.191 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C 0.007 3.993 4 N -0.133 5.133 5 C -0.049 4.049 6 C -0.305 4.305 7 C 0.385 3.615 8 O -0.424 6.424 9 N -0.357 5.357 10 C 0.020 3.980 11 C -0.171 4.171 12 C -0.105 4.105 13 C -0.185 4.185 14 C 0.058 3.942 15 N -0.351 5.351 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.178 4.178 25 C -0.165 4.165 26 C -0.036 4.036 27 C -0.135 4.135 28 N -0.123 5.123 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.200 0.800 37 H 0.233 0.767 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.088 0.912 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.086 -20.730 13.386 24.677 hybrid contribution -0.784 1.414 -0.923 1.861 sum -0.698 -19.317 12.463 22.999 Atomic orbital electron populations 1.21719 0.94185 1.02644 1.02358 1.21791 0.96584 0.95080 1.03882 1.21991 0.73301 0.99486 1.04546 1.48484 1.06851 1.37558 1.20455 1.23173 0.90548 0.96101 0.95089 1.20236 0.92438 1.13892 1.03917 1.17217 0.87630 0.77203 0.79405 1.90719 1.26835 1.58701 1.66106 1.45523 1.09485 1.52138 1.28592 1.21818 0.88445 0.95175 0.92561 1.23158 1.02202 0.96846 0.94884 1.22353 0.97906 0.93694 0.96534 1.23601 0.92871 1.01454 1.00531 1.21505 0.89573 0.89640 0.93520 1.42426 1.47126 1.37588 1.07977 1.19307 1.16242 1.07818 0.93951 0.91180 1.24756 1.00610 1.00015 0.95574 1.69655 1.42347 1.43391 1.02735 0.86210 0.79896 0.82482 0.77724 1.21685 1.21789 1.20770 1.23280 0.99703 0.95869 0.98971 1.23126 1.00100 0.95453 0.97814 1.22463 0.93387 0.94418 0.93368 1.20332 0.92671 1.00555 0.99916 1.77147 1.01148 1.20430 1.13544 0.92198 0.92186 0.91856 0.91303 0.90301 0.89194 0.88047 0.80030 0.76651 0.88274 0.91161 0.88985 0.90269 0.92898 0.90895 0.78131 0.93484 0.92247 0.90303 0.89265 0.91129 0.90276 0.91224 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.14 -0.82 6.11 -26.73 -0.16 -0.99 16 3 C 0.13 0.82 6.49 -4.04 -0.03 0.79 16 4 N -0.36 -3.46 3.65 -60.81 -0.22 -3.68 16 5 C 0.10 0.98 10.95 -16.56 -0.18 0.80 16 6 C -0.29 -3.46 6.13 -105.07 -0.64 -4.11 16 7 C 0.60 7.85 7.81 -12.52 -0.10 7.76 16 8 O -0.55 -8.59 14.52 5.28 0.08 -8.51 16 9 N -0.71 -8.08 5.24 -53.93 -0.28 -8.36 16 10 C 0.13 1.47 4.32 -66.95 -0.29 1.18 16 11 C -0.13 -1.50 7.59 -26.29 -0.20 -1.70 16 12 C -0.10 -1.38 1.02 -154.71 -0.16 -1.54 16 13 C -0.14 -2.25 6.97 -26.28 -0.18 -2.43 16 14 C 0.17 3.23 4.48 -66.95 -0.30 2.93 16 15 N -0.71 -17.39 5.40 -52.47 -0.28 -17.67 16 16 C -0.24 -6.58 9.97 -15.05 -0.15 -6.73 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 C -0.14 -2.20 7.59 -26.28 -0.20 -2.40 16 25 C -0.13 -1.56 7.64 -26.28 -0.20 -1.76 16 26 C 0.13 1.61 7.26 -82.02 -0.60 1.01 16 27 C -0.08 -0.79 9.92 36.01 0.36 -0.44 16 28 N -0.30 -3.61 12.33 33.90 0.42 -3.19 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.28 8.14 -51.92 -0.42 -0.15 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.44 8.06 -51.93 -0.42 0.02 16 36 H 0.18 1.16 7.46 -52.49 -0.39 0.76 16 37 H 0.40 3.97 6.93 -40.82 -0.28 3.69 16 38 H 0.10 1.23 7.47 -51.92 -0.39 0.84 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 42 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 43 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 44 H 0.38 9.97 7.92 -40.82 -0.32 9.65 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 1.30 8.12 -51.93 -0.42 0.87 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.10 1.08 6.55 -51.93 -0.34 0.74 16 LS Contribution 423.56 15.07 6.38 6.38 Total: -1.00 -33.10 423.56 -9.84 -42.94 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -8.87 Total: 10.50 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.76 Total: -8.42 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.35 Total: -59.86 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.10 -9.84 -42.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965566578.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.686 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds