Wall clock time and date at job start Wed Apr 1 2020 04:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46938 * 2 1 4 4 N 1.46500 * 109.47364 * 180.02562 * 3 2 1 5 5 C 1.34258 * 125.75630 * 125.27352 * 4 3 2 6 6 C 1.38050 * 107.41916 * 180.18451 * 5 4 3 7 7 C 1.47424 * 126.41554 * 179.86951 * 6 5 4 8 8 O 1.21602 * 119.99938 * 179.69212 * 7 6 5 9 9 N 1.34782 * 120.00188 * 359.69105 * 7 6 5 10 10 C 1.46497 * 120.00156 * 179.97438 * 9 7 6 11 11 C 1.53949 * 113.57877 * 154.99733 * 10 9 7 12 12 C 1.52903 * 86.78075 * 89.87216 * 11 10 9 13 13 C 1.52910 * 121.13886 * 259.17953 * 12 11 10 14 14 C 1.53950 * 86.78717 * 209.38108 * 13 12 11 15 15 N 1.46496 * 113.58021 * 139.33339 * 14 13 12 16 16 C 1.36940 * 119.99523 * 107.28284 * 15 14 13 17 17 H 1.07998 * 120.00443 * 359.97438 * 16 15 14 18 18 C 1.38824 * 119.99745 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99935 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99860 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47377 * 90.00218 * 20 18 16 22 22 H 1.48506 * 109.47140 * 209.99757 * 20 18 16 23 23 H 1.48498 * 109.47421 * 330.00035 * 20 18 16 24 24 C 1.52917 * 121.14033 * 150.62039 * 12 11 10 25 25 C 1.52907 * 88.04638 * 24.89875 * 12 11 10 26 26 C 1.41291 * 107.16797 * 359.61135 * 6 5 4 27 27 C 1.50704 * 125.98780 * 180.24316 * 26 6 5 28 28 N 1.30450 * 108.02211 * 0.23704 * 26 6 5 29 29 H 1.09003 * 109.47254 * 299.99149 * 1 2 3 30 30 H 1.08996 * 109.47900 * 59.99794 * 1 2 3 31 31 H 1.09008 * 109.47126 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47254 * 240.00851 * 2 1 3 33 33 H 1.08996 * 109.47900 * 120.00206 * 2 1 3 34 34 H 1.09004 * 109.47239 * 60.00841 * 3 2 1 35 35 H 1.08995 * 109.47811 * 300.00339 * 3 2 1 36 36 H 1.07998 * 126.29314 * 0.03709 * 5 4 3 37 37 H 0.96996 * 119.99710 * 359.97438 * 9 7 6 38 38 H 1.09008 * 112.87605 * 23.85967 * 10 9 7 39 39 H 1.08999 * 113.66653 * 335.39910 * 11 10 9 40 40 H 1.09000 * 113.66492 * 204.34103 * 11 10 9 41 41 H 1.09007 * 113.66009 * 323.85167 * 13 12 11 42 42 H 1.09002 * 113.66292 * 94.90250 * 13 12 11 43 43 H 1.09001 * 113.57502 * 270.13001 * 14 13 12 44 44 H 0.96998 * 120.00298 * 287.28307 * 15 14 13 45 45 H 0.96993 * 120.00000 * 180.02562 * 19 18 16 46 46 H 1.09001 * 113.65915 * 265.09197 * 24 12 11 47 47 H 1.08997 * 113.66386 * 36.04920 * 24 12 11 48 48 H 1.08995 * 113.66604 * 89.57097 * 25 12 11 49 49 H 1.08996 * 113.66613 * 220.63169 * 25 12 11 50 50 H 1.09001 * 109.47084 * 89.99635 * 27 26 6 51 51 H 1.09001 * 109.46782 * 209.99672 * 27 26 6 52 52 H 1.09003 * 109.46846 * 329.99398 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2890 2.0720 -0.8903 6 6 5.5996 1.8177 -0.5388 7 6 6.8032 2.3058 -1.2363 8 8 7.9077 2.0135 -0.8199 9 7 6.6794 3.0759 -2.3355 10 6 7.8755 3.5613 -3.0282 11 6 7.6399 3.8760 -4.5167 12 6 7.2771 5.2929 -4.0709 13 6 5.8183 5.7360 -3.9542 14 6 6.3135 7.1557 -4.2847 15 7 5.4310 7.8864 -5.1976 16 6 4.6571 8.9132 -4.7262 17 1 4.6971 9.1840 -3.6815 18 6 3.8212 9.6060 -5.5914 19 7 3.7729 9.2763 -6.8647 20 14 2.7651 11.0061 -4.9483 21 1 3.5181 12.2819 -5.0514 22 1 1.5215 11.0989 -5.7547 23 1 2.4160 10.7508 -3.5277 24 6 7.5140 6.4949 -4.9861 25 6 8.1362 5.0651 -2.8267 26 6 5.5713 1.0072 0.6181 27 6 6.7728 0.4845 1.3628 28 7 4.3230 0.7907 0.9289 29 1 -0.3634 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.9558 2.6658 -1.7286 37 1 5.7984 3.3087 -2.6678 38 1 8.7519 2.9387 -2.8476 39 1 6.8052 3.3275 -4.9531 40 1 8.5444 3.8263 -5.1229 41 1 5.1692 5.3099 -4.7192 42 1 5.4105 5.6380 -2.9481 43 1 6.5885 7.7373 -3.4048 44 1 5.3948 7.6430 -6.1358 45 1 3.1892 9.7606 -7.4692 46 1 8.4610 7.0031 -4.8043 47 1 7.3431 6.2817 -6.0413 48 1 9.1802 5.3495 -2.9578 49 1 7.6980 5.4665 -1.9129 50 1 7.0632 1.2001 2.1319 51 1 6.5247 -0.4692 1.8288 52 1 7.5993 0.3444 0.6661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965566578.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:37 Heat of formation + Delta-G solvation = 60.743801 kcal Electronic energy + Delta-G solvation = -30120.147101 eV Core-core repulsion = 26121.653032 eV Total energy + Delta-G solvation = -3998.494069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.49711 -41.61431 -39.75694 -37.16253 -36.43332 -35.12138 -33.77889 -33.38952 -31.67115 -30.86161 -29.76098 -26.86488 -26.69957 -26.51290 -26.08166 -24.32146 -23.21460 -22.66817 -21.67389 -21.04289 -20.53647 -19.36575 -18.74208 -18.55721 -17.33117 -16.89880 -16.82528 -16.62439 -16.03970 -16.01355 -15.77098 -15.43162 -15.31654 -15.12152 -14.93275 -14.45763 -14.37494 -13.99452 -13.85020 -13.62316 -13.59639 -13.31322 -13.08557 -13.02446 -12.98491 -12.90292 -12.83393 -12.79224 -12.38170 -12.30234 -12.17482 -12.05104 -11.96825 -11.79611 -11.64176 -11.16603 -11.00239 -10.86050 -10.77014 -10.61247 -10.38309 -10.02505 -9.59629 -8.94142 -7.92883 -5.20167 0.49966 1.10563 1.37180 1.48004 1.49352 1.57428 2.27800 2.45055 2.57754 3.29326 3.39106 3.57815 3.62216 3.67762 3.75731 3.86979 3.87312 3.94739 4.02769 4.08876 4.22694 4.31088 4.33478 4.39102 4.44926 4.49106 4.52446 4.66524 4.71297 4.75911 4.77971 4.90527 4.94166 4.95626 4.98029 5.01952 5.06055 5.07427 5.09938 5.15443 5.15650 5.19881 5.28719 5.34320 5.47151 5.53503 5.59534 5.70983 5.80395 5.87945 6.30087 6.51139 6.69466 7.34057 7.35908 8.14685 8.37253 9.30461 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008402 B = 0.002628 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.884255 B =10651.386100 C =13225.146979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.119 3.881 4 N -0.354 5.354 5 C 0.117 3.883 6 C -0.316 4.316 7 C 0.597 3.403 8 O -0.578 6.578 9 N -0.699 5.699 10 C 0.128 3.872 11 C -0.120 4.120 12 C -0.090 4.090 13 C -0.129 4.129 14 C 0.146 3.854 15 N -0.727 5.727 16 C -0.240 4.240 17 H 0.073 0.927 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.968 3.032 21 H -0.290 1.290 22 H -0.296 1.296 23 H -0.269 1.269 24 C -0.132 4.132 25 C -0.124 4.124 26 C 0.114 3.886 27 C -0.072 4.072 28 N -0.323 5.323 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.216 0.784 37 H 0.407 0.593 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.102 0.898 49 H 0.060 0.940 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -20.551 12.609 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.000 4.000 4 N -0.130 5.130 5 C -0.036 4.036 6 C -0.331 4.331 7 C 0.386 3.614 8 O -0.459 6.459 9 N -0.349 5.349 10 C 0.023 3.977 11 C -0.158 4.158 12 C -0.090 4.090 13 C -0.170 4.170 14 C 0.036 3.964 15 N -0.365 5.365 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.268 4.268 19 N -0.621 5.621 20 Si 0.798 3.202 21 H -0.218 1.218 22 H -0.222 1.222 23 H -0.194 1.194 24 C -0.171 4.171 25 C -0.162 4.162 26 C -0.053 4.053 27 C -0.131 4.131 28 N -0.145 5.145 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.147 0.853 36 H 0.233 0.767 37 H 0.243 0.757 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.206 0.794 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.120 0.880 49 H 0.079 0.921 50 H 0.100 0.900 51 H 0.100 0.900 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.576 -21.188 13.852 25.321 hybrid contribution -0.565 1.523 -1.004 1.910 sum -1.140 -19.665 12.848 23.518 Atomic orbital electron populations 1.21692 0.92811 1.02946 1.03021 1.21711 0.97641 0.94714 1.02644 1.22347 0.71480 0.99960 1.06262 1.48793 1.07887 1.36631 1.19735 1.23630 0.89671 0.95079 0.95195 1.20260 0.93065 1.15275 1.04549 1.17396 0.87549 0.76944 0.79482 1.90698 1.28086 1.60035 1.67081 1.45446 1.09884 1.51548 1.28064 1.21772 0.88521 0.94586 0.92853 1.23137 1.03204 0.94664 0.94748 1.22178 0.96089 0.94132 0.96647 1.23339 0.94416 0.98477 1.00755 1.21890 0.90745 0.90677 0.93053 1.42597 1.47934 1.37826 1.08162 1.19670 1.15630 1.07842 0.94022 0.90863 1.25510 1.02576 1.02809 0.95897 1.69802 1.43576 1.44839 1.03850 0.85210 0.77928 0.79461 0.77605 1.21765 1.22243 1.19407 1.23171 0.98407 0.96592 0.98887 1.23172 1.00561 0.95821 0.96675 1.22745 0.93862 0.94769 0.93885 1.20295 0.91954 1.01235 0.99593 1.77097 1.01323 1.21361 1.14723 0.91763 0.91250 0.91796 0.91966 0.92119 0.88541 0.85261 0.76736 0.75671 0.88618 0.90351 0.87355 0.90820 0.91961 0.91746 0.79433 0.94089 0.91517 0.90855 0.87965 0.92101 0.90035 0.89999 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 71.98 0.71 -0.35 16 2 C -0.13 -1.40 6.11 30.59 0.19 -1.21 16 3 C 0.12 1.26 6.49 86.38 0.56 1.82 16 4 N -0.35 -6.26 3.65 -346.30 -1.26 -7.53 16 5 C 0.12 1.98 10.95 84.28 0.92 2.90 16 6 C -0.32 -7.24 6.13 -20.15 -0.12 -7.36 16 7 C 0.60 15.10 7.81 86.66 0.68 15.78 16 8 O -0.58 -18.09 14.52 -4.04 -0.06 -18.15 16 9 N -0.70 -14.55 5.24 -442.78 -2.32 -16.87 16 10 C 0.13 2.71 4.32 45.63 0.20 2.90 16 11 C -0.12 -2.33 7.59 30.88 0.23 -2.10 16 12 C -0.09 -2.17 1.02 -52.31 -0.05 -2.23 16 13 C -0.13 -3.81 6.97 30.88 0.22 -3.59 16 14 C 0.15 5.43 4.48 45.63 0.20 5.64 16 15 N -0.73 -35.47 5.40 -319.92 -1.73 -37.20 16 16 C -0.24 -12.99 9.97 84.04 0.84 -12.15 16 17 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 18 C -0.08 -4.26 5.50 84.87 0.47 -3.80 16 19 N -0.97 -58.24 13.06 21.66 0.28 -57.96 16 20 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 C -0.13 -3.97 7.59 30.89 0.23 -3.74 16 25 C -0.12 -2.78 7.64 30.88 0.24 -2.54 16 26 C 0.11 2.77 7.26 43.52 0.32 3.09 16 27 C -0.07 -1.52 9.92 71.24 0.71 -0.82 16 28 N -0.32 -7.54 12.33 -46.67 -0.58 -8.12 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.13 0.66 8.06 -2.39 -0.02 0.65 16 36 H 0.22 1.95 7.46 -2.91 -0.02 1.93 16 37 H 0.41 6.98 6.93 -92.71 -0.64 6.34 16 38 H 0.10 2.18 7.47 -2.38 -0.02 2.16 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.06 1.71 8.09 -2.39 -0.02 1.69 16 43 H 0.06 2.49 8.10 -2.39 -0.02 2.47 16 44 H 0.37 19.60 7.92 -92.71 -0.73 18.86 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16 48 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.08 1.96 6.55 -2.39 -0.02 1.94 16 Total: -1.00 -72.13 423.56 2.44 -69.69 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.45 Total: 36.65 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 6.53 Total: -7.75 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -5.61 Total: -127.68 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.06 Total: -18.15 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.13 2.44 -69.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965566578.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.436 kcal (2) G-P(sol) polarization free energy of solvation -72.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds