Wall clock time and date at job start Wed Apr 1 2020 04:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47384 * 2 1 4 4 N 1.46501 * 109.47129 * 179.97438 * 3 2 1 5 5 N 1.28442 * 125.19628 * 263.33990 * 4 3 2 6 6 C 1.30854 * 110.93110 * 179.97438 * 5 4 3 7 7 C 1.39675 * 107.86096 * 359.77559 * 6 5 4 8 8 C 1.36606 * 125.18810 * 83.32374 * 4 3 2 9 9 C 1.47165 * 126.87966 * 359.97438 * 8 4 3 10 10 O 1.21622 * 120.00538 * 5.40802 * 9 8 4 11 11 N 1.34781 * 119.99357 * 185.40174 * 9 8 4 12 12 C 1.46505 * 119.99527 * 174.65609 * 11 9 8 13 13 H 1.08995 * 108.97398 * 36.07685 * 12 11 9 14 14 C 1.52529 * 109.03940 * 277.15117 * 12 11 9 15 15 C 1.53810 * 111.70928 * 293.48516 * 14 12 11 16 16 C 1.51626 * 107.02762 * 302.46705 * 15 14 12 17 17 H 1.08994 * 111.26179 * 304.36002 * 16 15 14 18 18 C 1.53064 * 116.67499 * 176.24271 * 16 15 14 19 19 N 1.48664 * 103.44237 * 204.11583 * 18 16 15 20 20 C 1.36931 * 125.78082 * 204.33764 * 19 18 16 21 21 H 1.08004 * 119.99644 * 163.28518 * 20 19 18 22 22 C 1.38811 * 120.00217 * 343.29213 * 20 19 18 23 23 N 1.31617 * 119.99982 * 353.35126 * 22 20 19 24 24 Si 1.86807 * 119.99908 * 173.35475 * 22 20 19 25 25 H 1.48503 * 109.47074 * 84.99539 * 24 22 20 26 26 H 1.48493 * 109.47072 * 324.99484 * 24 22 20 27 27 H 1.48499 * 109.46834 * 204.99508 * 24 22 20 28 28 C 1.48240 * 108.43184 * 24.60903 * 19 18 16 29 29 C 1.52304 * 105.88231 * 2.83180 * 28 19 18 30 30 H 1.08998 * 109.66867 * 87.95109 * 29 28 19 31 31 C 1.51436 * 117.57752 * 214.87273 * 29 28 19 32 32 H 1.08999 * 109.47208 * 59.99370 * 1 2 3 33 33 H 1.08995 * 109.47722 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47200 * 300.00594 * 1 2 3 35 35 H 1.09002 * 109.47254 * 239.99940 * 2 1 3 36 36 H 1.09002 * 109.47055 * 119.99688 * 2 1 3 37 37 H 1.09007 * 109.47084 * 60.00230 * 3 2 1 38 38 H 1.08994 * 109.47116 * 299.99836 * 3 2 1 39 39 H 1.07997 * 126.07230 * 180.02562 * 6 5 4 40 40 H 1.08001 * 127.31831 * 180.26845 * 7 6 5 41 41 H 0.96995 * 120.00377 * 354.65576 * 11 9 8 42 42 H 1.08989 * 109.03475 * 54.06619 * 14 12 11 43 43 H 1.09004 * 109.03034 * 172.91833 * 14 12 11 44 44 H 1.08989 * 109.94926 * 183.08802 * 15 14 12 45 45 H 1.09004 * 109.93920 * 61.83950 * 15 14 12 46 46 H 1.08994 * 110.62405 * 85.62420 * 18 16 15 47 47 H 1.08999 * 110.76146 * 322.66813 * 18 16 15 48 48 H 0.97002 * 119.99719 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.17467 * 122.05713 * 28 19 18 50 50 H 1.08998 * 110.16879 * 243.85592 * 28 19 18 51 51 H 1.08999 * 109.93966 * 298.35042 * 31 29 28 52 52 H 1.08998 * 109.94459 * 59.50363 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.2449 1.5643 1.0434 6 6 5.5132 1.5262 0.7238 7 6 5.6014 1.3588 -0.6601 8 6 4.2927 1.3124 -1.1079 9 6 3.8402 1.1489 -2.4987 10 8 2.6554 1.2173 -2.7648 11 7 4.7388 0.9235 -3.4775 12 6 4.2819 0.6445 -4.8413 13 1 3.3922 1.2400 -5.0457 14 6 3.9276 -0.8347 -4.9544 15 6 5.1697 -1.7301 -4.8085 16 6 6.1511 -1.3066 -5.8839 17 1 5.6975 -1.3544 -6.8739 18 6 7.5142 -2.0029 -5.8830 19 7 8.4006 -1.0282 -6.5716 20 6 9.5615 -1.3296 -7.2323 21 1 9.9916 -0.6171 -7.9207 22 6 10.1855 -2.5508 -7.0174 23 7 9.7366 -3.3641 -6.0849 24 14 11.6623 -3.0399 -8.0515 25 1 12.8956 -2.4661 -7.4559 26 1 11.4925 -2.5222 -9.4329 27 1 11.7726 -4.5204 -8.0878 28 6 7.8182 0.3261 -6.4163 29 6 6.5808 0.1503 -5.5459 30 1 6.8590 0.2206 -4.4943 31 6 5.3897 1.0404 -5.8327 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 1.6767 1.9563 0.8901 38 1 1.6767 1.9563 -0.8899 39 1 6.3443 1.6057 1.4088 40 1 6.4999 1.2832 -1.2546 41 1 5.6880 0.9461 -3.2792 42 1 3.2118 -1.0896 -4.1730 43 1 3.4702 -1.0173 -5.9269 44 1 4.8933 -2.7751 -4.9481 45 1 5.6148 -1.5905 -3.8233 46 1 7.4675 -2.9391 -6.4391 47 1 7.8569 -2.1799 -4.8635 48 1 10.1724 -4.2176 -5.9350 49 1 8.5325 0.9888 -5.9277 50 1 7.5367 0.7281 -7.3895 51 1 5.6629 2.0855 -5.6868 52 1 5.0474 0.8852 -6.8559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979761005.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:16 Heat of formation + Delta-G solvation = 54.324940 kcal Electronic energy + Delta-G solvation = -31528.365969 eV Core-core repulsion = 27529.593558 eV Total energy + Delta-G solvation = -3998.772412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.70283 -40.30708 -38.63049 -35.93534 -35.45269 -33.38812 -32.00821 -31.73382 -31.31647 -30.28898 -28.81380 -26.78291 -26.36068 -25.11030 -23.65532 -22.29263 -22.04815 -21.81688 -20.62213 -20.17015 -19.85616 -18.96222 -18.24656 -16.69827 -16.34915 -16.12690 -15.78453 -15.44932 -15.13200 -14.85348 -14.74929 -14.18140 -14.13254 -14.04005 -13.74968 -13.42304 -13.37089 -13.25231 -12.73692 -12.46903 -12.41360 -12.31443 -12.14853 -11.98655 -11.69110 -11.45591 -11.26282 -11.19674 -11.11380 -10.97821 -10.81718 -10.74772 -10.64318 -10.14902 -10.02693 -9.98385 -9.87967 -9.58704 -9.46749 -9.35601 -9.20342 -8.97599 -8.58113 -6.74403 -5.75223 -3.10061 1.10967 2.17971 2.46456 3.06345 3.13479 3.39083 3.44622 3.46150 4.28824 4.42679 4.48232 4.52239 4.73193 4.77491 4.83509 4.84787 4.98701 5.00798 5.11514 5.23063 5.28460 5.30348 5.36828 5.44041 5.47825 5.57170 5.60748 5.61987 5.66604 5.69873 5.77161 5.78770 5.89787 5.95639 6.10839 6.12673 6.19978 6.21708 6.30288 6.33601 6.43027 6.53347 6.55749 6.59942 6.66319 6.80372 7.00395 7.33476 7.45816 7.62572 7.77088 7.87547 8.02194 8.24682 9.17438 9.79613 10.51260 11.38350 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017112 B = 0.002495 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.854834 B =11219.482662 C =11730.957358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.119 3.881 4 N -0.256 5.256 5 N -0.280 5.280 6 C -0.004 4.004 7 C -0.187 4.187 8 C -0.038 4.038 9 C 0.592 3.408 10 O -0.544 6.544 11 N -0.703 5.703 12 C 0.153 3.847 13 H 0.086 0.914 14 C -0.126 4.126 15 C -0.100 4.100 16 C -0.116 4.116 17 H 0.070 0.930 18 C 0.185 3.815 19 N -0.605 5.605 20 C -0.230 4.230 21 H 0.072 0.928 22 C -0.005 4.005 23 N -0.916 5.916 24 Si 0.909 3.091 25 H -0.288 1.288 26 H -0.282 1.282 27 H -0.290 1.290 28 C 0.142 3.858 29 C -0.106 4.106 30 H 0.065 0.935 31 C -0.110 4.110 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.187 0.813 40 H 0.162 0.838 41 H 0.405 0.595 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.031 0.969 48 H 0.253 0.747 49 H 0.025 0.975 50 H 0.022 0.978 51 H 0.067 0.933 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.140 9.430 10.940 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.001 4.001 4 N -0.043 5.043 5 N -0.112 5.112 6 C -0.179 4.179 7 C -0.216 4.216 8 C -0.166 4.166 9 C 0.377 3.623 10 O -0.423 6.423 11 N -0.356 5.356 12 C 0.049 3.951 13 H 0.104 0.896 14 C -0.165 4.165 15 C -0.138 4.138 16 C -0.136 4.136 17 H 0.088 0.912 18 C 0.061 3.939 19 N -0.331 5.331 20 C -0.359 4.359 21 H 0.090 0.910 22 C -0.202 4.202 23 N -0.562 5.562 24 Si 0.739 3.261 25 H -0.215 1.215 26 H -0.207 1.207 27 H -0.216 1.216 28 C 0.017 3.983 29 C -0.125 4.125 30 H 0.083 0.917 31 C -0.148 4.148 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.204 0.796 40 H 0.179 0.821 41 H 0.242 0.758 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.049 0.951 48 H 0.063 0.937 49 H 0.043 0.957 50 H 0.040 0.960 51 H 0.086 0.914 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.719 9.397 11.618 23.179 hybrid contribution 2.052 -0.431 -0.943 2.299 sum -15.667 8.966 10.674 20.971 Atomic orbital electron populations 1.21647 0.93954 1.02531 1.02230 1.21822 0.97127 0.95057 1.03285 1.22245 0.72551 0.99780 1.05537 1.45803 1.07581 1.48697 1.02264 1.73198 1.04406 1.19787 1.13847 1.23579 0.93432 1.05716 0.95184 1.22335 0.95726 1.07614 0.95926 1.21460 0.91476 1.13505 0.90185 1.16898 0.85798 0.76576 0.83028 1.90764 1.16233 1.51812 1.83464 1.45956 1.09959 1.70781 1.08884 1.21125 0.97814 0.96269 0.79861 0.89575 1.21924 0.98370 0.93985 1.02188 1.21259 0.94866 0.98659 0.98991 1.22364 0.97524 0.95832 0.97834 0.91156 1.21048 0.83960 0.92348 0.96578 1.45051 1.24319 0.99986 1.63775 1.18963 0.98598 1.01306 1.16991 0.90990 1.24914 0.98694 0.98269 0.98317 1.69934 1.42354 1.10766 1.33157 0.86201 0.82659 0.77460 0.79788 1.21474 1.20727 1.21642 1.20997 0.92110 0.89441 0.95774 1.21765 0.94612 0.96416 0.99749 0.91704 1.21602 0.94604 0.99557 0.99022 0.91921 0.91912 0.92475 0.90767 0.91425 0.88463 0.86915 0.79646 0.82092 0.75841 0.92094 0.91124 0.91943 0.92102 0.92466 0.95122 0.93726 0.95739 0.96011 0.91402 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.67 16 2 C -0.13 -1.24 6.26 -26.73 -0.17 -1.40 16 3 C 0.12 1.15 5.65 -4.04 -0.02 1.13 16 4 N -0.26 -3.05 3.35 -57.14 -0.19 -3.24 16 5 N -0.28 -3.42 11.90 30.59 0.36 -3.06 16 6 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 7 C -0.19 -2.01 10.50 -38.99 -0.41 -2.42 16 8 C -0.04 -0.46 6.96 -82.06 -0.57 -1.03 16 9 C 0.59 7.45 7.66 -12.63 -0.10 7.36 16 10 O -0.54 -7.75 14.22 5.26 0.07 -7.68 16 11 N -0.70 -8.04 4.65 -54.77 -0.25 -8.30 16 12 C 0.15 1.78 2.72 -67.73 -0.18 1.60 16 13 H 0.09 1.02 7.51 -51.93 -0.39 0.63 16 14 C -0.13 -1.55 5.41 -26.55 -0.14 -1.70 16 15 C -0.10 -1.44 5.57 -27.01 -0.15 -1.59 16 16 C -0.12 -1.98 2.49 -89.89 -0.22 -2.21 16 17 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 18 C 0.19 4.27 4.98 -2.81 -0.01 4.26 16 19 N -0.60 -15.02 3.44 -170.43 -0.59 -15.61 16 20 C -0.23 -6.33 10.24 -15.06 -0.15 -6.49 16 21 H 0.07 1.93 7.84 -52.48 -0.41 1.52 16 22 C 0.00 -0.13 5.42 -17.43 -0.09 -0.23 16 23 N -0.92 -26.58 10.91 55.49 0.61 -25.98 16 24 Si 0.91 21.86 29.56 -169.99 -5.02 16.83 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.14 2.80 6.99 -3.44 -0.02 2.77 16 29 C -0.11 -1.64 2.22 -90.37 -0.20 -1.84 16 30 H 0.06 0.98 6.14 -51.93 -0.32 0.66 16 31 C -0.11 -1.32 5.37 -27.08 -0.15 -1.46 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.11 1.15 6.60 -51.93 -0.34 0.81 16 39 H 0.19 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.16 1.41 7.58 -52.49 -0.40 1.01 16 41 H 0.40 4.32 5.86 -40.82 -0.24 4.08 16 42 H 0.06 0.78 8.07 -51.94 -0.42 0.36 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.90 7.84 -51.93 -0.41 0.49 16 46 H 0.06 1.49 7.35 -51.93 -0.38 1.11 16 47 H 0.03 0.77 7.98 -51.93 -0.41 0.36 16 48 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 52 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 LS Contribution 404.22 15.07 6.09 6.09 Total: -1.00 -31.95 404.22 -10.12 -42.07 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.75 Total: 3.02 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.44 Total: -4.16 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.06 Total: -56.18 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.07 Total: -7.68 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.95 -10.12 -42.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979761005.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.395 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds