Wall clock time and date at job start Wed Apr 1 2020 04:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47384 * 2 1 4 4 N 1.46501 * 109.47129 * 179.97438 * 3 2 1 5 5 N 1.28442 * 125.19628 * 263.33990 * 4 3 2 6 6 C 1.30854 * 110.93110 * 179.97438 * 5 4 3 7 7 C 1.39675 * 107.86096 * 359.77559 * 6 5 4 8 8 C 1.36606 * 125.18810 * 83.32374 * 4 3 2 9 9 C 1.47165 * 126.87966 * 359.97438 * 8 4 3 10 10 O 1.21622 * 120.00538 * 5.40802 * 9 8 4 11 11 N 1.34781 * 119.99357 * 185.40174 * 9 8 4 12 12 C 1.46505 * 119.99527 * 174.65609 * 11 9 8 13 13 H 1.08995 * 108.97398 * 36.07685 * 12 11 9 14 14 C 1.52529 * 109.03940 * 277.15117 * 12 11 9 15 15 C 1.53810 * 111.70928 * 293.48516 * 14 12 11 16 16 C 1.51626 * 107.02762 * 302.46705 * 15 14 12 17 17 H 1.08994 * 111.26179 * 304.36002 * 16 15 14 18 18 C 1.53064 * 116.67499 * 176.24271 * 16 15 14 19 19 N 1.48664 * 103.44237 * 204.11583 * 18 16 15 20 20 C 1.36931 * 125.78082 * 204.33764 * 19 18 16 21 21 H 1.08004 * 119.99644 * 163.28518 * 20 19 18 22 22 C 1.38811 * 120.00217 * 343.29213 * 20 19 18 23 23 N 1.31617 * 119.99982 * 353.35126 * 22 20 19 24 24 Si 1.86807 * 119.99908 * 173.35475 * 22 20 19 25 25 H 1.48503 * 109.47074 * 84.99539 * 24 22 20 26 26 H 1.48493 * 109.47072 * 324.99484 * 24 22 20 27 27 H 1.48499 * 109.46834 * 204.99508 * 24 22 20 28 28 C 1.48240 * 108.43184 * 24.60903 * 19 18 16 29 29 C 1.52304 * 105.88231 * 2.83180 * 28 19 18 30 30 H 1.08998 * 109.66867 * 87.95109 * 29 28 19 31 31 C 1.51436 * 117.57752 * 214.87273 * 29 28 19 32 32 H 1.08999 * 109.47208 * 59.99370 * 1 2 3 33 33 H 1.08995 * 109.47722 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47200 * 300.00594 * 1 2 3 35 35 H 1.09002 * 109.47254 * 239.99940 * 2 1 3 36 36 H 1.09002 * 109.47055 * 119.99688 * 2 1 3 37 37 H 1.09007 * 109.47084 * 60.00230 * 3 2 1 38 38 H 1.08994 * 109.47116 * 299.99836 * 3 2 1 39 39 H 1.07997 * 126.07230 * 180.02562 * 6 5 4 40 40 H 1.08001 * 127.31831 * 180.26845 * 7 6 5 41 41 H 0.96995 * 120.00377 * 354.65576 * 11 9 8 42 42 H 1.08989 * 109.03475 * 54.06619 * 14 12 11 43 43 H 1.09004 * 109.03034 * 172.91833 * 14 12 11 44 44 H 1.08989 * 109.94926 * 183.08802 * 15 14 12 45 45 H 1.09004 * 109.93920 * 61.83950 * 15 14 12 46 46 H 1.08994 * 110.62405 * 85.62420 * 18 16 15 47 47 H 1.08999 * 110.76146 * 322.66813 * 18 16 15 48 48 H 0.97002 * 119.99719 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.17467 * 122.05713 * 28 19 18 50 50 H 1.08998 * 110.16879 * 243.85592 * 28 19 18 51 51 H 1.08999 * 109.93966 * 298.35042 * 31 29 28 52 52 H 1.08998 * 109.94459 * 59.50363 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.2449 1.5643 1.0434 6 6 5.5132 1.5262 0.7238 7 6 5.6014 1.3588 -0.6601 8 6 4.2927 1.3124 -1.1079 9 6 3.8402 1.1489 -2.4987 10 8 2.6554 1.2173 -2.7648 11 7 4.7388 0.9235 -3.4775 12 6 4.2819 0.6445 -4.8413 13 1 3.3922 1.2400 -5.0457 14 6 3.9276 -0.8347 -4.9544 15 6 5.1697 -1.7301 -4.8085 16 6 6.1511 -1.3066 -5.8839 17 1 5.6975 -1.3544 -6.8739 18 6 7.5142 -2.0029 -5.8830 19 7 8.4006 -1.0282 -6.5716 20 6 9.5615 -1.3296 -7.2323 21 1 9.9916 -0.6171 -7.9207 22 6 10.1855 -2.5508 -7.0174 23 7 9.7366 -3.3641 -6.0849 24 14 11.6623 -3.0399 -8.0515 25 1 12.8956 -2.4661 -7.4559 26 1 11.4925 -2.5222 -9.4329 27 1 11.7726 -4.5204 -8.0878 28 6 7.8182 0.3261 -6.4163 29 6 6.5808 0.1503 -5.5459 30 1 6.8590 0.2206 -4.4943 31 6 5.3897 1.0404 -5.8327 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 1.6767 1.9563 0.8901 38 1 1.6767 1.9563 -0.8899 39 1 6.3443 1.6057 1.4088 40 1 6.4999 1.2832 -1.2546 41 1 5.6880 0.9461 -3.2792 42 1 3.2118 -1.0896 -4.1730 43 1 3.4702 -1.0173 -5.9269 44 1 4.8933 -2.7751 -4.9481 45 1 5.6148 -1.5905 -3.8233 46 1 7.4675 -2.9391 -6.4391 47 1 7.8569 -2.1799 -4.8635 48 1 10.1724 -4.2176 -5.9350 49 1 8.5325 0.9888 -5.9277 50 1 7.5367 0.7281 -7.3895 51 1 5.6629 2.0855 -5.6868 52 1 5.0474 0.8852 -6.8559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979761005.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:14 Heat of formation + Delta-G solvation = 35.825058 kcal Electronic energy + Delta-G solvation = -31529.168184 eV Core-core repulsion = 27529.593558 eV Total energy + Delta-G solvation = -3999.574627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.54380 -41.43736 -39.83642 -37.16794 -36.37499 -34.78366 -33.58876 -32.56920 -32.34918 -31.53771 -30.30667 -27.88539 -27.46597 -26.84870 -24.60504 -23.54461 -23.01256 -22.69812 -21.85762 -21.49112 -21.04864 -20.12519 -19.13304 -18.70769 -17.27759 -17.04585 -16.86666 -16.65725 -16.21632 -16.12229 -15.83127 -15.64232 -15.35999 -14.97404 -14.89902 -14.73136 -14.30907 -14.16447 -14.11787 -13.88765 -13.45234 -13.35458 -13.11354 -12.99154 -12.95180 -12.87861 -12.66986 -12.52645 -12.40829 -12.33952 -11.93860 -11.87235 -11.85945 -11.79892 -11.76545 -11.39867 -11.12185 -11.03414 -10.82114 -10.60476 -10.31878 -10.03798 -9.94005 -8.76744 -7.86537 -5.22901 0.21936 1.36812 1.46370 1.47812 1.56338 1.64068 2.15581 2.23224 2.50517 3.32315 3.51640 3.54560 3.61303 3.64685 3.76834 3.81659 3.87152 4.00239 4.12883 4.14227 4.22404 4.36100 4.45042 4.47026 4.51086 4.51410 4.61836 4.65875 4.72033 4.74600 4.78884 4.83365 4.89224 4.96865 5.03282 5.04394 5.08472 5.10737 5.13745 5.20054 5.28695 5.29866 5.37142 5.50001 5.51278 5.56138 5.59819 5.69704 5.74889 5.82571 6.22621 6.41079 7.00883 7.09281 7.11132 7.77073 8.48120 9.25725 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017112 B = 0.002495 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.854834 B =11219.482662 C =11730.957358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C 0.116 3.884 4 N -0.263 5.263 5 N -0.299 5.299 6 C -0.007 4.007 7 C -0.186 4.186 8 C -0.057 4.057 9 C 0.593 3.407 10 O -0.563 6.563 11 N -0.698 5.698 12 C 0.159 3.841 13 H 0.095 0.905 14 C -0.117 4.117 15 C -0.092 4.092 16 C -0.102 4.102 17 H 0.072 0.928 18 C 0.193 3.807 19 N -0.629 5.629 20 C -0.243 4.243 21 H 0.075 0.925 22 C -0.063 4.063 23 N -0.946 5.946 24 Si 0.974 3.026 25 H -0.283 1.283 26 H -0.271 1.271 27 H -0.295 1.295 28 C 0.136 3.864 29 C -0.089 4.089 30 H 0.070 0.930 31 C -0.098 4.098 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.213 0.787 40 H 0.180 0.820 41 H 0.409 0.591 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.015 0.985 47 H 0.000 1.000 48 H 0.247 0.753 49 H 0.024 0.976 50 H 0.032 0.968 51 H 0.088 0.912 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.016 11.086 10.980 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.003 4.003 4 N -0.051 5.051 5 N -0.131 5.131 6 C -0.183 4.183 7 C -0.215 4.215 8 C -0.185 4.185 9 C 0.379 3.621 10 O -0.443 6.443 11 N -0.350 5.350 12 C 0.055 3.945 13 H 0.113 0.887 14 C -0.156 4.156 15 C -0.130 4.130 16 C -0.122 4.122 17 H 0.090 0.910 18 C 0.068 3.932 19 N -0.356 5.356 20 C -0.372 4.372 21 H 0.093 0.907 22 C -0.256 4.256 23 N -0.594 5.594 24 Si 0.802 3.198 25 H -0.210 1.210 26 H -0.196 1.196 27 H -0.221 1.221 28 C 0.012 3.988 29 C -0.108 4.108 30 H 0.088 0.912 31 C -0.136 4.136 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.230 0.770 40 H 0.197 0.803 41 H 0.247 0.753 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.034 0.966 47 H 0.018 0.982 48 H 0.056 0.944 49 H 0.042 0.958 50 H 0.050 0.950 51 H 0.106 0.894 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.604 11.090 11.650 24.592 hybrid contribution 2.362 -0.931 -0.944 2.709 sum -16.241 10.158 10.706 21.945 Atomic orbital electron populations 1.21627 0.92284 1.03047 1.02924 1.21744 0.98499 0.94474 1.01837 1.22361 0.71869 1.00089 1.06001 1.46012 1.08189 1.48744 1.02151 1.73183 1.05199 1.20458 1.14277 1.24116 0.93667 1.04751 0.95726 1.22645 0.95875 1.06699 0.96267 1.21586 0.92231 1.14551 0.90172 1.16961 0.85586 0.76208 0.83332 1.90751 1.16988 1.52773 1.83765 1.45904 1.10063 1.70371 1.08682 1.21075 0.97934 0.95728 0.79760 0.88746 1.21846 0.96892 0.93912 1.02914 1.21185 0.95088 0.99142 0.97628 1.22148 0.94817 0.96225 0.98984 0.90984 1.20809 0.87201 0.91360 0.93831 1.45400 1.24094 1.02595 1.63509 1.19344 0.99414 1.01388 1.17069 0.90721 1.25719 1.01647 0.98494 0.99788 1.70133 1.43617 1.10825 1.34828 0.85180 0.79400 0.76570 0.78668 1.20999 1.19610 1.22135 1.21191 0.93593 0.86903 0.97104 1.21663 0.94163 0.95837 0.99173 0.91193 1.21549 0.92602 0.99749 0.99665 0.92084 0.91493 0.90896 0.93056 0.91878 0.86859 0.87500 0.76997 0.80313 0.75325 0.92278 0.89798 0.92289 0.92523 0.96602 0.98189 0.94423 0.95769 0.95043 0.89362 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.13 -2.27 6.26 30.59 0.19 -2.08 16 3 C 0.12 2.17 5.65 86.38 0.49 2.66 16 4 N -0.26 -6.04 3.35 -334.68 -1.12 -7.16 16 5 N -0.30 -6.95 11.90 -57.14 -0.68 -7.63 16 6 C -0.01 -0.15 12.03 85.19 1.02 0.88 16 7 C -0.19 -3.70 10.50 22.66 0.24 -3.46 16 8 C -0.06 -1.32 6.96 40.78 0.28 -1.04 16 9 C 0.59 14.08 7.66 86.59 0.66 14.74 16 10 O -0.56 -15.32 14.22 -4.10 -0.06 -15.38 16 11 N -0.70 -14.42 4.65 -445.43 -2.07 -16.50 16 12 C 0.16 3.24 2.72 45.12 0.12 3.37 16 13 H 0.09 1.92 7.51 -2.39 -0.02 1.90 16 14 C -0.12 -2.62 5.41 30.71 0.17 -2.46 16 15 C -0.09 -2.57 5.57 30.42 0.17 -2.40 16 16 C -0.10 -3.44 2.49 -10.32 -0.03 -3.46 16 17 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 18 C 0.19 9.18 4.98 85.98 0.43 9.61 16 19 N -0.63 -31.68 3.44 -693.12 -2.39 -34.07 16 20 C -0.24 -13.55 10.24 84.03 0.86 -12.69 16 21 H 0.08 4.02 7.84 -2.91 -0.02 3.99 16 22 C -0.06 -3.56 5.42 84.86 0.46 -3.10 16 23 N -0.95 -56.88 10.91 21.65 0.24 -56.65 16 24 Si 0.97 45.61 29.56 68.60 2.03 47.64 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 28 C 0.14 5.22 6.99 85.81 0.60 5.82 16 29 C -0.09 -2.59 2.22 -10.63 -0.02 -2.62 16 30 H 0.07 1.98 6.14 -2.39 -0.01 1.96 16 31 C -0.10 -2.02 5.37 30.37 0.16 -1.85 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.05 1.15 7.90 -2.39 -0.02 1.13 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.11 2.12 6.60 -2.39 -0.02 2.11 16 39 H 0.21 2.72 8.06 -2.91 -0.02 2.69 16 40 H 0.18 2.74 7.58 -2.91 -0.02 2.72 16 41 H 0.41 7.79 5.86 -92.71 -0.54 7.24 16 42 H 0.06 1.40 8.07 -2.39 -0.02 1.38 16 43 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.63 7.84 -2.39 -0.02 1.61 16 46 H 0.02 0.85 7.35 -2.39 -0.02 0.84 16 47 H 0.00 0.00 7.98 -2.39 -0.02 -0.02 16 48 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 49 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 51 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.09 1.82 8.04 -2.39 -0.02 1.80 16 Total: -1.00 -71.14 404.22 2.83 -68.31 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.36 Total: 20.65 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 6.52 Total: 0.78 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -6.03 Total: -122.01 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.06 Total: -15.38 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -71.14 2.83 -68.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979761005.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.138 kcal (2) G-P(sol) polarization free energy of solvation -71.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds