Wall clock time and date at job start Wed Apr 1 2020 04:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46653 * 2 1 4 4 N 1.46496 * 109.47169 * 180.02562 * 3 2 1 5 5 N 1.28448 * 125.18911 * 85.78620 * 4 3 2 6 6 C 1.30864 * 110.92575 * 180.02562 * 5 4 3 7 7 C 1.39671 * 107.86445 * 359.97438 * 6 5 4 8 8 C 1.36603 * 125.19350 * 265.48583 * 4 3 2 9 9 C 1.47164 * 126.88023 * 359.97432 * 8 4 3 10 10 O 1.21629 * 120.00320 * 5.44046 * 9 8 4 11 11 N 1.34779 * 119.99754 * 185.44019 * 9 8 4 12 12 C 1.46500 * 119.99707 * 185.11133 * 11 9 8 13 13 H 1.08997 * 109.71346 * 34.40501 * 12 11 9 14 14 C 1.53297 * 109.71269 * 273.76561 * 12 11 9 15 15 C 1.52628 * 108.50659 * 176.53239 * 14 12 11 16 16 C 1.52991 * 110.91933 * 62.21733 * 15 14 12 17 17 H 1.09002 * 112.98191 * 73.80786 * 16 15 14 18 18 C 1.55836 * 106.37079 * 198.08755 * 16 15 14 19 19 N 1.47624 * 104.47232 * 77.06864 * 18 16 15 20 20 C 1.36939 * 125.72433 * 204.88063 * 19 18 16 21 21 H 1.07994 * 119.99673 * 179.97438 * 20 19 18 22 22 C 1.38815 * 119.99942 * 359.97438 * 20 19 18 23 23 N 1.31618 * 120.00181 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99892 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47093 * 59.99691 * 24 22 20 26 26 H 1.48496 * 109.47254 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46874 * 300.00134 * 24 22 20 28 28 C 1.47423 * 108.54749 * 24.86112 * 19 18 16 29 29 C 1.53375 * 106.51587 * 359.33535 * 28 19 18 30 30 H 1.08997 * 108.95035 * 91.05339 * 29 28 19 31 31 C 1.50888 * 113.08662 * 212.46366 * 29 28 19 32 32 H 1.08993 * 109.47751 * 59.99963 * 1 2 3 33 33 H 1.09004 * 109.46663 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46902 * 299.99449 * 1 2 3 35 35 H 1.08996 * 109.46902 * 240.00551 * 2 1 3 36 36 H 1.09001 * 109.47472 * 120.00024 * 2 1 3 37 37 H 1.09001 * 109.47201 * 300.00191 * 3 2 1 38 38 H 1.09003 * 109.47106 * 60.00239 * 3 2 1 39 39 H 1.08005 * 126.06566 * 179.97438 * 6 5 4 40 40 H 1.08000 * 127.32471 * 180.02562 * 7 6 5 41 41 H 0.96993 * 120.00265 * 5.10756 * 11 9 8 42 42 H 1.09000 * 109.63140 * 296.23915 * 14 12 11 43 43 H 1.09003 * 109.63161 * 56.83047 * 14 12 11 44 44 H 1.09002 * 109.18468 * 301.84963 * 15 14 12 45 45 H 1.08994 * 109.14959 * 182.56388 * 15 14 12 46 46 H 1.09002 * 110.43805 * 318.31746 * 18 16 15 47 47 H 1.09002 * 110.43182 * 195.81766 * 18 16 15 48 48 H 0.97000 * 120.00063 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.04641 * 240.07586 * 28 19 18 50 50 H 1.08994 * 110.05006 * 118.59929 * 28 19 18 51 51 H 1.08994 * 109.06290 * 305.32830 * 31 29 28 52 52 H 1.09000 * 109.00789 * 186.35720 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 7 4.2447 1.3658 -1.0478 6 6 5.5131 1.3890 -0.7268 7 6 5.6014 1.4915 0.6634 8 6 4.2927 1.5305 1.1119 9 6 3.8403 1.6410 2.5080 10 8 2.6555 1.5619 2.7714 11 7 4.7389 1.8298 3.4946 12 6 4.3024 1.8278 4.8930 13 1 3.4857 1.1176 5.0223 14 6 3.8352 3.2326 5.2909 15 6 3.3067 3.1802 6.7218 16 6 4.4118 2.7714 7.6976 17 1 5.1361 3.5658 7.8774 18 6 3.6961 2.3007 8.9995 19 7 3.1983 0.9485 8.6786 20 6 2.1368 0.3243 9.2775 21 1 1.8509 -0.6703 8.9687 22 6 1.4282 0.9700 10.2815 23 7 1.7769 2.1819 10.6581 24 14 -0.0203 0.1187 11.0979 25 1 0.4411 -1.1398 11.7369 26 1 -0.6022 1.0132 12.1307 27 1 -1.0510 -0.1941 10.0756 28 6 4.0354 0.3832 7.6048 29 6 5.0757 1.4540 7.2534 30 1 5.9644 1.2985 7.8650 31 6 5.4717 1.4390 5.7975 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5137 0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 1.6765 1.9564 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 6.3442 1.3380 -1.4147 40 1 6.4999 1.5356 1.2610 41 1 5.6745 1.9669 3.2787 42 1 4.6736 3.9268 5.2353 43 1 3.0411 3.5583 4.6189 44 1 2.4939 2.4561 6.7772 45 1 2.9293 4.1642 6.9998 46 1 2.8658 2.9651 9.2388 47 1 4.4027 2.2594 9.8284 48 1 1.2816 2.6333 11.3594 49 1 3.4221 0.1576 6.7324 50 1 4.5335 -0.5205 7.9559 51 1 5.8101 0.4378 5.5309 52 1 6.2893 2.1435 5.6446 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979761008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:19 Heat of formation + Delta-G solvation = 54.074449 kcal Electronic energy + Delta-G solvation = -31383.923257 eV Core-core repulsion = 27385.139983 eV Total energy + Delta-G solvation = -3998.783274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.75375 -40.06987 -38.72331 -35.90080 -35.35941 -33.47572 -31.89723 -31.70407 -31.25016 -30.40724 -28.84341 -26.78609 -26.03722 -24.99613 -23.42272 -22.37559 -22.22998 -21.83234 -20.95674 -20.16192 -19.87156 -18.63496 -17.75756 -16.80527 -16.39384 -16.22665 -15.95619 -15.47389 -15.00801 -14.76609 -14.62502 -14.19932 -14.11787 -13.91274 -13.70898 -13.50233 -13.43803 -13.33120 -12.54338 -12.40435 -12.26581 -12.20350 -12.04856 -11.74647 -11.65429 -11.52641 -11.14233 -11.09040 -11.03282 -11.00829 -10.88043 -10.61312 -10.50697 -10.16513 -10.02592 -9.81501 -9.68512 -9.48812 -9.42605 -9.36193 -9.26652 -8.93688 -8.60714 -6.78089 -5.61465 -3.02564 1.07653 2.15312 2.39037 3.07204 3.08533 3.42958 3.47184 3.48259 4.27031 4.40073 4.52398 4.55311 4.71115 4.84693 4.88833 4.96419 4.96841 5.13282 5.24880 5.29987 5.36685 5.43644 5.45808 5.48290 5.48723 5.57714 5.63044 5.69246 5.72628 5.82509 5.85582 5.87901 5.95227 5.98785 6.09205 6.18821 6.23725 6.29046 6.42057 6.46258 6.50752 6.51493 6.65202 6.71888 6.87121 6.99981 7.15654 7.34075 7.52220 7.65880 7.83477 7.90158 8.04076 8.40414 9.25993 9.86789 10.52518 11.42074 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.002689 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.139220 B =10411.872429 C =11816.523219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.114 3.886 4 N -0.253 5.253 5 N -0.280 5.280 6 C -0.006 4.006 7 C -0.193 4.193 8 C -0.033 4.033 9 C 0.587 3.413 10 O -0.532 6.532 11 N -0.708 5.708 12 C 0.147 3.853 13 H 0.097 0.903 14 C -0.123 4.123 15 C -0.101 4.101 16 C -0.115 4.115 17 H 0.072 0.928 18 C 0.155 3.845 19 N -0.602 5.602 20 C -0.220 4.220 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.923 5.923 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.140 3.860 29 C -0.090 4.090 30 H 0.067 0.933 31 C -0.106 4.106 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.185 0.815 40 H 0.160 0.840 41 H 0.399 0.601 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.109 0.891 47 H 0.007 0.993 48 H 0.252 0.748 49 H 0.024 0.976 50 H 0.019 0.981 51 H 0.063 0.937 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.380 1.106 -21.484 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.006 4.006 4 N -0.041 5.041 5 N -0.112 5.112 6 C -0.181 4.181 7 C -0.222 4.222 8 C -0.162 4.162 9 C 0.372 3.628 10 O -0.409 6.409 11 N -0.358 5.358 12 C 0.044 3.956 13 H 0.115 0.885 14 C -0.162 4.162 15 C -0.139 4.139 16 C -0.135 4.135 17 H 0.090 0.910 18 C 0.031 3.969 19 N -0.327 5.327 20 C -0.348 4.348 21 H 0.093 0.907 22 C -0.207 4.207 23 N -0.571 5.571 24 Si 0.743 3.257 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.014 3.986 29 C -0.110 4.110 30 H 0.085 0.915 31 C -0.145 4.145 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.137 0.863 39 H 0.202 0.798 40 H 0.177 0.823 41 H 0.234 0.766 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.127 0.873 47 H 0.025 0.975 48 H 0.062 0.938 49 H 0.042 0.958 50 H 0.037 0.963 51 H 0.082 0.918 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.460 0.989 -22.004 22.954 hybrid contribution 0.522 -0.405 1.004 1.202 sum 6.982 0.584 -21.000 22.138 Atomic orbital electron populations 1.21668 0.93864 1.02620 1.02421 1.21802 0.97213 0.94906 1.03182 1.22367 0.72314 1.00023 1.05910 1.45851 1.07732 1.48608 1.01890 1.73202 1.04340 1.19733 1.13966 1.23556 0.93491 1.06064 0.95018 1.22243 0.95552 1.08730 0.95689 1.21536 0.91479 1.13110 0.90094 1.16924 0.85938 0.76981 0.82970 1.90822 1.15966 1.50472 1.83617 1.45823 1.10946 1.72592 1.06429 1.21184 0.98155 0.98828 0.77449 0.88498 1.21903 1.00496 0.95571 0.98191 1.21355 0.98926 1.01946 0.91651 1.22609 0.96599 0.95175 0.99083 0.90992 1.22257 0.97366 0.87697 0.89623 1.44579 1.33005 1.14684 1.40475 1.19029 1.03883 0.98464 1.13452 0.90676 1.24752 0.99785 0.96869 0.99247 1.69768 1.41941 1.12731 1.32707 0.86181 0.82327 0.78263 0.78920 1.21326 1.21622 1.21187 1.21220 0.91416 0.94059 0.91924 1.21234 0.98828 0.97440 0.93481 0.91475 1.21185 0.96855 1.01353 0.95100 0.92444 0.91864 0.91715 0.91356 0.90889 0.88631 0.86265 0.79775 0.82265 0.76623 0.92420 0.92122 0.90311 0.92476 0.87300 0.97457 0.93765 0.95828 0.96288 0.91784 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.29 6.26 -26.73 -0.17 -1.46 16 3 C 0.11 1.17 5.87 -4.04 -0.02 1.15 16 4 N -0.25 -2.98 3.35 -57.14 -0.19 -3.18 16 5 N -0.28 -3.24 11.90 30.59 0.36 -2.87 16 6 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16 7 C -0.19 -1.75 10.50 -38.99 -0.41 -2.16 16 8 C -0.03 -0.39 6.96 -82.06 -0.57 -0.96 16 9 C 0.59 7.68 7.76 -12.64 -0.10 7.59 16 10 O -0.53 -8.61 14.38 5.25 0.08 -8.53 16 11 N -0.71 -7.88 5.07 -54.89 -0.28 -8.16 16 12 C 0.15 2.00 2.29 -67.86 -0.16 1.84 16 13 H 0.10 1.64 6.26 -51.93 -0.33 1.31 16 14 C -0.12 -1.77 5.53 -26.77 -0.15 -1.92 16 15 C -0.10 -1.77 4.81 -26.93 -0.13 -1.90 16 16 C -0.12 -2.07 3.72 -88.56 -0.33 -2.39 16 17 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 18 C 0.16 3.68 5.18 -1.91 -0.01 3.67 16 19 N -0.60 -15.15 2.93 -169.58 -0.50 -15.65 16 20 C -0.22 -6.12 10.28 -15.06 -0.15 -6.28 16 21 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 22 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 23 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 24 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.14 2.86 6.25 -3.34 -0.02 2.84 16 29 C -0.09 -1.48 2.69 -90.93 -0.24 -1.73 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 C -0.11 -1.34 4.84 -27.87 -0.13 -1.47 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.12 1.37 6.18 -51.93 -0.32 1.05 16 39 H 0.19 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.16 0.94 7.63 -52.49 -0.40 0.54 16 41 H 0.40 3.21 7.69 -40.82 -0.31 2.89 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.67 7.17 -51.93 -0.37 1.30 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.11 2.92 5.69 -51.93 -0.30 2.62 16 47 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.02 0.49 6.50 -51.93 -0.34 0.15 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 51 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 402.38 15.07 6.06 6.06 Total: -1.00 -32.31 402.38 -10.14 -42.45 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -8.68 Total: 3.56 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.53 Total: -4.71 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.04 Total: -56.05 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.31 -10.14 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979761008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.519 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds