Wall clock time and date at job start Wed Apr 1 2020 04:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46653 * 2 1 4 4 N 1.46496 * 109.47169 * 180.02562 * 3 2 1 5 5 N 1.28448 * 125.18911 * 85.78620 * 4 3 2 6 6 C 1.30864 * 110.92575 * 180.02562 * 5 4 3 7 7 C 1.39671 * 107.86445 * 359.97438 * 6 5 4 8 8 C 1.36603 * 125.19350 * 265.48583 * 4 3 2 9 9 C 1.47164 * 126.88023 * 359.97432 * 8 4 3 10 10 O 1.21629 * 120.00320 * 5.44046 * 9 8 4 11 11 N 1.34779 * 119.99754 * 185.44019 * 9 8 4 12 12 C 1.46500 * 119.99707 * 185.11133 * 11 9 8 13 13 H 1.08997 * 109.71346 * 34.40501 * 12 11 9 14 14 C 1.53297 * 109.71269 * 273.76561 * 12 11 9 15 15 C 1.52628 * 108.50659 * 176.53239 * 14 12 11 16 16 C 1.52991 * 110.91933 * 62.21733 * 15 14 12 17 17 H 1.09002 * 112.98191 * 73.80786 * 16 15 14 18 18 C 1.55836 * 106.37079 * 198.08755 * 16 15 14 19 19 N 1.47624 * 104.47232 * 77.06864 * 18 16 15 20 20 C 1.36939 * 125.72433 * 204.88063 * 19 18 16 21 21 H 1.07994 * 119.99673 * 179.97438 * 20 19 18 22 22 C 1.38815 * 119.99942 * 359.97438 * 20 19 18 23 23 N 1.31618 * 120.00181 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99892 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47093 * 59.99691 * 24 22 20 26 26 H 1.48496 * 109.47254 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46874 * 300.00134 * 24 22 20 28 28 C 1.47423 * 108.54749 * 24.86112 * 19 18 16 29 29 C 1.53375 * 106.51587 * 359.33535 * 28 19 18 30 30 H 1.08997 * 108.95035 * 91.05339 * 29 28 19 31 31 C 1.50888 * 113.08662 * 212.46366 * 29 28 19 32 32 H 1.08993 * 109.47751 * 59.99963 * 1 2 3 33 33 H 1.09004 * 109.46663 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46902 * 299.99449 * 1 2 3 35 35 H 1.08996 * 109.46902 * 240.00551 * 2 1 3 36 36 H 1.09001 * 109.47472 * 120.00024 * 2 1 3 37 37 H 1.09001 * 109.47201 * 300.00191 * 3 2 1 38 38 H 1.09003 * 109.47106 * 60.00239 * 3 2 1 39 39 H 1.08005 * 126.06566 * 179.97438 * 6 5 4 40 40 H 1.08000 * 127.32471 * 180.02562 * 7 6 5 41 41 H 0.96993 * 120.00265 * 5.10756 * 11 9 8 42 42 H 1.09000 * 109.63140 * 296.23915 * 14 12 11 43 43 H 1.09003 * 109.63161 * 56.83047 * 14 12 11 44 44 H 1.09002 * 109.18468 * 301.84963 * 15 14 12 45 45 H 1.08994 * 109.14959 * 182.56388 * 15 14 12 46 46 H 1.09002 * 110.43805 * 318.31746 * 18 16 15 47 47 H 1.09002 * 110.43182 * 195.81766 * 18 16 15 48 48 H 0.97000 * 120.00063 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.04641 * 240.07586 * 28 19 18 50 50 H 1.08994 * 110.05006 * 118.59929 * 28 19 18 51 51 H 1.08994 * 109.06290 * 305.32830 * 31 29 28 52 52 H 1.09000 * 109.00789 * 186.35720 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 7 4.2447 1.3658 -1.0478 6 6 5.5131 1.3890 -0.7268 7 6 5.6014 1.4915 0.6634 8 6 4.2927 1.5305 1.1119 9 6 3.8403 1.6410 2.5080 10 8 2.6555 1.5619 2.7714 11 7 4.7389 1.8298 3.4946 12 6 4.3024 1.8278 4.8930 13 1 3.4857 1.1176 5.0223 14 6 3.8352 3.2326 5.2909 15 6 3.3067 3.1802 6.7218 16 6 4.4118 2.7714 7.6976 17 1 5.1361 3.5658 7.8774 18 6 3.6961 2.3007 8.9995 19 7 3.1983 0.9485 8.6786 20 6 2.1368 0.3243 9.2775 21 1 1.8509 -0.6703 8.9687 22 6 1.4282 0.9700 10.2815 23 7 1.7769 2.1819 10.6581 24 14 -0.0203 0.1187 11.0979 25 1 0.4411 -1.1398 11.7369 26 1 -0.6022 1.0132 12.1307 27 1 -1.0510 -0.1941 10.0756 28 6 4.0354 0.3832 7.6048 29 6 5.0757 1.4540 7.2534 30 1 5.9644 1.2985 7.8650 31 6 5.4717 1.4390 5.7975 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5137 0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 1.6765 1.9564 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 6.3442 1.3380 -1.4147 40 1 6.4999 1.5356 1.2610 41 1 5.6745 1.9669 3.2787 42 1 4.6736 3.9268 5.2353 43 1 3.0411 3.5583 4.6189 44 1 2.4939 2.4561 6.7772 45 1 2.9293 4.1642 6.9998 46 1 2.8658 2.9651 9.2388 47 1 4.4027 2.2594 9.8284 48 1 1.2816 2.6333 11.3594 49 1 3.4221 0.1576 6.7324 50 1 4.5335 -0.5205 7.9559 51 1 5.8101 0.4378 5.5309 52 1 6.2893 2.1435 5.6446 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979761008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:18 Heat of formation + Delta-G solvation = 34.261991 kcal Electronic energy + Delta-G solvation = -31384.782389 eV Core-core repulsion = 27385.139983 eV Total energy + Delta-G solvation = -3999.642407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.52772 -41.29138 -39.99854 -37.07651 -36.37162 -34.99687 -33.44471 -32.55782 -32.38779 -31.68430 -30.39093 -27.68050 -27.45803 -26.76351 -24.50978 -23.65095 -23.11927 -22.85511 -22.06948 -21.57020 -21.10061 -19.75758 -19.07601 -18.56296 -17.48109 -17.15353 -16.86189 -16.78580 -16.29122 -16.07632 -15.65475 -15.60060 -15.37562 -15.20876 -14.83664 -14.76109 -14.29237 -14.12790 -14.00807 -13.76040 -13.69789 -13.30761 -13.14165 -13.03679 -12.99372 -12.91588 -12.64644 -12.48654 -12.39241 -12.22013 -12.12397 -11.89194 -11.80172 -11.78297 -11.72066 -11.33421 -11.14151 -10.94423 -10.83958 -10.69383 -10.33175 -10.03517 -9.93634 -8.83211 -7.75711 -5.18697 0.23458 1.35995 1.43624 1.46642 1.52830 1.67740 2.14338 2.17442 2.49327 3.32658 3.52768 3.54046 3.71297 3.73539 3.77688 3.78843 4.00306 4.06540 4.13047 4.18825 4.20769 4.28103 4.34324 4.42205 4.50266 4.55632 4.59470 4.64792 4.68555 4.70976 4.75980 4.80167 4.88201 4.95221 4.98987 5.06721 5.08871 5.15372 5.19628 5.24637 5.27021 5.38040 5.44216 5.46412 5.54415 5.57226 5.60026 5.75108 5.76837 5.88962 6.35687 6.45523 7.06699 7.13500 7.15068 7.81570 8.45756 9.25091 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.002689 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.139220 B =10411.872429 C =11816.523219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.113 3.887 4 N -0.267 5.267 5 N -0.302 5.302 6 C -0.006 4.006 7 C -0.173 4.173 8 C -0.060 4.060 9 C 0.585 3.415 10 O -0.574 6.574 11 N -0.689 5.689 12 C 0.155 3.845 13 H 0.056 0.944 14 C -0.111 4.111 15 C -0.093 4.093 16 C -0.097 4.097 17 H 0.105 0.895 18 C 0.155 3.845 19 N -0.623 5.623 20 C -0.237 4.237 21 H 0.073 0.927 22 C -0.066 4.066 23 N -0.946 5.946 24 Si 0.975 3.025 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.133 3.867 29 C -0.077 4.077 30 H 0.082 0.918 31 C -0.096 4.096 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.219 0.781 40 H 0.197 0.803 41 H 0.420 0.580 42 H 0.091 0.909 43 H 0.045 0.955 44 H 0.030 0.970 45 H 0.052 0.948 46 H 0.072 0.928 47 H -0.018 1.018 48 H 0.246 0.754 49 H 0.017 0.983 50 H 0.019 0.981 51 H 0.082 0.918 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.465 1.267 -23.723 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C -0.007 4.007 4 N -0.055 5.055 5 N -0.134 5.134 6 C -0.181 4.181 7 C -0.202 4.202 8 C -0.188 4.188 9 C 0.371 3.629 10 O -0.454 6.454 11 N -0.340 5.340 12 C 0.050 3.950 13 H 0.074 0.926 14 C -0.149 4.149 15 C -0.132 4.132 16 C -0.116 4.116 17 H 0.123 0.877 18 C 0.030 3.970 19 N -0.348 5.348 20 C -0.367 4.367 21 H 0.091 0.909 22 C -0.258 4.258 23 N -0.596 5.596 24 Si 0.803 3.197 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.008 3.992 29 C -0.096 4.096 30 H 0.100 0.900 31 C -0.134 4.134 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.236 0.764 40 H 0.214 0.786 41 H 0.258 0.742 42 H 0.110 0.890 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.000 1.000 48 H 0.056 0.944 49 H 0.035 0.965 50 H 0.037 0.963 51 H 0.101 0.899 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.600 1.140 -24.271 26.125 hybrid contribution -0.432 -0.485 1.668 1.790 sum 9.168 0.655 -22.603 24.400 Atomic orbital electron populations 1.21655 0.92797 1.03079 1.02701 1.21711 0.98097 0.94506 1.01941 1.22338 0.72478 1.00104 1.05741 1.45951 1.07993 1.49474 1.02098 1.73192 1.05543 1.20437 1.14240 1.24233 0.93478 1.04544 0.95869 1.22730 0.95469 1.06054 0.95913 1.21546 0.92746 1.15261 0.89276 1.17215 0.85524 0.76232 0.83937 1.90813 1.17895 1.52327 1.84316 1.45504 1.11732 1.71868 1.04913 1.20871 0.97784 0.97178 0.79125 0.92582 1.21778 1.01078 0.96953 0.95112 1.21200 0.97665 1.00131 0.94175 1.22520 0.96684 0.96913 0.95511 0.87685 1.22068 0.96023 0.86822 0.92073 1.44853 1.33131 1.15605 1.41256 1.19368 1.04983 0.98656 1.13674 0.90895 1.25547 1.02397 0.97681 1.00200 1.70034 1.42805 1.13824 1.32923 0.85207 0.79304 0.77367 0.77808 1.20483 1.21722 1.20737 1.21425 0.91939 0.95561 0.90229 1.21185 0.97538 0.94268 0.96653 0.90013 1.21128 0.97045 1.03820 0.91440 0.90620 0.91313 0.92932 0.90991 0.93466 0.87065 0.88036 0.76425 0.78581 0.74167 0.89020 0.93610 0.95087 0.92946 0.91001 0.99958 0.94431 0.96541 0.96332 0.89936 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.12 -2.50 6.26 30.60 0.19 -2.30 16 3 C 0.11 2.39 5.87 86.38 0.51 2.89 16 4 N -0.27 -6.09 3.35 -334.68 -1.12 -7.21 16 5 N -0.30 -6.41 11.90 -57.14 -0.68 -7.09 16 6 C -0.01 -0.09 12.03 85.18 1.02 0.94 16 7 C -0.17 -2.48 10.50 22.66 0.24 -2.24 16 8 C -0.06 -1.30 6.96 40.79 0.28 -1.02 16 9 C 0.58 14.83 7.76 86.59 0.67 15.51 16 10 O -0.57 -19.33 14.38 -4.12 -0.06 -19.39 16 11 N -0.69 -13.45 5.07 -445.83 -2.26 -15.71 16 12 C 0.15 3.92 2.29 45.04 0.10 4.03 16 13 H 0.06 1.93 6.26 -2.39 -0.01 1.91 16 14 C -0.11 -3.01 5.53 30.57 0.17 -2.85 16 15 C -0.09 -3.32 4.81 30.47 0.15 -3.17 16 16 C -0.10 -3.37 3.72 -9.46 -0.04 -3.41 16 17 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 18 C 0.16 7.61 5.18 87.14 0.45 8.06 16 19 N -0.62 -32.59 2.93 -690.44 -2.02 -34.61 16 20 C -0.24 -13.78 10.28 84.03 0.86 -12.92 16 21 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 22 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 23 N -0.95 -57.35 10.09 21.65 0.22 -57.13 16 24 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 28 C 0.13 5.52 6.25 86.33 0.54 6.06 16 29 C -0.08 -2.35 2.69 -11.00 -0.03 -2.38 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 C -0.10 -2.02 4.84 29.86 0.14 -1.87 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 2.50 6.18 -2.39 -0.01 2.49 16 39 H 0.22 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.20 1.17 7.63 -2.91 -0.02 1.15 16 41 H 0.42 4.70 7.69 -92.71 -0.71 3.98 16 42 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.03 1.38 7.17 -2.39 -0.02 1.37 16 45 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.07 4.07 5.69 -2.39 -0.01 4.06 16 47 H -0.02 -0.93 8.14 -2.39 -0.02 -0.94 16 48 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 49 H 0.02 0.71 6.50 -2.39 -0.02 0.70 16 50 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -77.05 402.38 2.75 -74.30 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.20 Total: 17.41 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 6.45 Total: 0.25 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -5.87 Total: -121.75 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.06 Total: -19.39 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -77.05 2.75 -74.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979761008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.564 kcal (2) G-P(sol) polarization free energy of solvation -77.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds