Wall clock time and date at job start Wed Apr 1 2020 04:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47201 * 2 1 4 4 H 1.09003 * 109.47090 * 305.31189 * 3 2 1 5 5 C 1.52999 * 109.47158 * 65.30703 * 3 2 1 6 6 N 1.46501 * 109.47446 * 185.30993 * 3 2 1 7 7 N 1.28446 * 125.18698 * 305.58547 * 6 3 2 8 8 C 1.30862 * 110.92337 * 180.27798 * 7 6 3 9 9 C 1.39668 * 107.86190 * 359.70570 * 8 7 6 10 10 C 1.36599 * 125.19153 * 125.36296 * 6 3 2 11 11 C 1.47161 * 126.88277 * 0.02562 * 10 6 3 12 12 O 1.21629 * 119.99955 * 1.51552 * 11 10 6 13 13 N 1.34778 * 119.99910 * 181.50911 * 11 10 6 14 14 C 1.47671 * 134.45592 * 174.46220 * 13 11 10 15 15 C 1.53439 * 85.97496 * 155.71627 * 14 13 11 16 16 C 1.47676 * 134.45293 * 354.47485 * 13 11 10 17 17 C 1.52621 * 113.71602 * 268.85564 * 15 14 13 18 18 C 1.53187 * 109.35809 * 171.27643 * 17 15 14 19 19 C 1.52663 * 109.42791 * 58.92249 * 18 17 15 20 20 N 1.46899 * 109.34830 * 303.77292 * 19 18 17 21 21 C 1.36938 * 120.69478 * 235.31327 * 20 19 18 22 22 H 1.07990 * 120.00578 * 150.08839 * 21 20 19 23 23 C 1.38819 * 119.99312 * 330.08785 * 21 20 19 24 24 N 1.31611 * 120.00430 * 334.91756 * 23 21 20 25 25 Si 1.86803 * 119.99573 * 154.91652 * 23 21 20 26 26 H 1.48498 * 109.47315 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47192 * 119.99991 * 25 23 21 28 28 H 1.48497 * 109.47225 * 239.99900 * 25 23 21 29 29 C 1.47119 * 118.61823 * 55.04170 * 20 19 18 30 30 H 1.08997 * 109.47204 * 180.78704 * 1 2 3 31 31 H 1.09003 * 109.47319 * 300.78813 * 1 2 3 32 32 H 1.09003 * 109.47344 * 60.78372 * 1 2 3 33 33 H 1.09002 * 109.47248 * 239.99976 * 2 1 3 34 34 H 1.08996 * 109.46989 * 120.00036 * 2 1 3 35 35 H 1.09003 * 109.46723 * 60.00261 * 5 3 2 36 36 H 1.09001 * 109.47511 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47367 * 300.00550 * 5 3 2 38 38 H 1.07999 * 126.06791 * 179.68159 * 8 7 6 39 39 H 1.08007 * 127.32244 * 180.02562 * 9 8 7 40 40 H 1.09005 * 113.79297 * 41.44697 * 14 13 11 41 41 H 1.09005 * 113.89743 * 269.99972 * 14 13 11 42 42 H 1.09001 * 113.79537 * 90.01637 * 16 13 11 43 43 H 1.09004 * 113.78843 * 318.53816 * 16 13 11 44 44 H 1.09006 * 109.49220 * 291.23511 * 17 15 14 45 45 H 1.08994 * 109.49463 * 51.30394 * 17 15 14 46 46 H 1.08996 * 109.49302 * 179.02548 * 18 17 15 47 47 H 1.09001 * 109.48478 * 299.09698 * 18 17 15 48 48 H 1.09000 * 109.43967 * 183.79128 * 19 18 17 49 49 H 1.08994 * 109.37021 * 63.71640 * 19 18 17 50 50 H 0.97004 * 120.00120 * 354.16715 * 24 23 21 51 51 H 1.08998 * 109.64156 * 68.57412 * 29 20 19 52 52 H 1.08999 * 109.64075 * 189.19372 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9831 -0.8386 5 6 1.6419 2.1242 1.3106 6 7 3.4994 1.4445 -0.1278 7 7 4.3104 0.8086 0.6388 8 6 5.5516 1.0107 0.2764 9 6 5.5409 1.8545 -0.8365 10 6 4.2051 2.1195 -1.0830 11 6 3.6553 2.9645 -2.1551 12 8 2.4544 3.1391 -2.2365 13 7 4.4826 3.5450 -3.0468 14 6 4.2853 4.3436 -4.2732 15 6 5.6825 4.9144 -3.9965 16 6 5.9496 3.6370 -3.1890 17 6 5.6703 6.1839 -3.1495 18 6 7.1055 6.5433 -2.7526 19 6 7.9437 6.7509 -4.0116 20 7 7.8740 5.5445 -4.8469 21 6 9.0163 4.8997 -5.2403 22 1 9.0034 3.8333 -5.4096 23 6 10.1908 5.6172 -5.4213 24 7 10.1406 6.9013 -5.7052 25 14 11.8428 4.7598 -5.2619 26 1 11.6275 3.3261 -4.9405 27 1 12.5851 4.8733 -6.5431 28 1 12.6292 5.3984 -4.1760 29 6 6.5513 5.0399 -5.2472 30 1 -0.3633 -1.0275 0.0141 31 1 -0.3634 0.5260 0.8828 32 1 -0.3634 0.5016 -0.8969 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0808 1.5836 2.1492 36 1 2.0056 3.1517 1.3108 37 1 0.5560 2.1227 1.4057 38 1 6.4284 0.5986 0.7536 39 1 6.3939 2.2220 -1.3878 40 1 3.4858 5.0802 -4.1944 41 1 4.2262 3.7472 -5.1837 42 1 6.3862 2.8289 -3.7759 43 1 6.4723 3.8125 -2.2487 44 1 5.2368 7.0014 -3.7257 45 1 5.0757 6.0163 -2.2515 46 1 7.1009 7.4594 -2.1620 47 1 7.5337 5.7324 -2.1634 48 1 8.9796 6.9403 -3.7306 49 1 7.5543 7.6029 -4.5687 50 1 9.2855 7.3282 -5.8714 51 1 6.0891 5.7375 -5.9457 52 1 6.6590 4.0628 -5.7180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981795779.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:32 Heat of formation + Delta-G solvation = 92.329153 kcal Electronic energy + Delta-G solvation = -31755.589732 eV Core-core repulsion = 27758.465306 eV Total energy + Delta-G solvation = -3997.124425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.65252 -40.62539 -38.28411 -36.73106 -36.05784 -32.93688 -31.80738 -31.44827 -30.61356 -29.59528 -29.20629 -26.30671 -26.19295 -25.23843 -25.08306 -22.71661 -22.41579 -22.37671 -20.85488 -20.24410 -19.18494 -18.04778 -17.42529 -17.35140 -16.48870 -16.16819 -15.57673 -15.55796 -15.32576 -14.60241 -14.34285 -14.15923 -14.02027 -13.99339 -13.69055 -13.61729 -13.39974 -13.17471 -12.93772 -12.81937 -12.58028 -12.43054 -12.09847 -12.02890 -12.01360 -11.79174 -11.48526 -11.32460 -11.16437 -11.09874 -10.85899 -10.71889 -10.46443 -10.25799 -10.14437 -10.05631 -9.88320 -9.77135 -9.31425 -9.28940 -9.08870 -8.66096 -8.39815 -6.92648 -6.11475 -3.30868 1.20934 2.17871 2.56556 2.89579 3.18652 3.48471 3.50407 3.63491 4.17741 4.23338 4.44825 4.51270 4.60680 4.70518 4.85191 4.95435 5.01104 5.03493 5.06681 5.12887 5.20358 5.25287 5.40080 5.42210 5.44705 5.45688 5.55457 5.58991 5.60206 5.63159 5.63933 5.66493 5.68220 5.78699 5.86370 5.89427 5.91669 5.94968 6.10492 6.23948 6.37426 6.42642 6.44816 6.53212 6.60985 6.65963 6.68925 7.02172 7.15191 7.62290 7.92779 7.96443 8.08240 8.53071 9.05228 9.78343 10.23652 11.16403 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.002692 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.669888 B =10400.432994 C =11132.409725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.130 3.870 4 H 0.135 0.865 5 C -0.159 4.159 6 N -0.252 5.252 7 N -0.276 5.276 8 C -0.008 4.008 9 C -0.188 4.188 10 C -0.035 4.035 11 C 0.610 3.390 12 O -0.554 6.554 13 N -0.625 5.625 14 C 0.119 3.881 15 C -0.102 4.102 16 C 0.118 3.882 17 C -0.083 4.083 18 C -0.136 4.136 19 C 0.150 3.850 20 N -0.594 5.594 21 C -0.351 4.351 22 H 0.056 0.944 23 C -0.021 4.021 24 N -0.913 5.913 25 Si 1.066 2.934 26 H -0.291 1.291 27 H -0.294 1.294 28 H -0.290 1.290 29 C 0.164 3.836 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.185 0.815 39 H 0.164 0.836 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.078 0.922 49 H 0.016 0.984 50 H 0.270 0.730 51 H 0.023 0.977 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.028 -9.453 10.678 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.031 3.969 4 H 0.153 0.847 5 C -0.217 4.217 6 N -0.041 5.041 7 N -0.109 5.109 8 C -0.183 4.183 9 C -0.216 4.216 10 C -0.162 4.162 11 C 0.399 3.601 12 O -0.434 6.434 13 N -0.358 5.358 14 C -0.003 4.003 15 C -0.104 4.104 16 C -0.003 4.003 17 C -0.121 4.121 18 C -0.175 4.175 19 C 0.024 3.976 20 N -0.318 5.318 21 C -0.480 4.480 22 H 0.074 0.926 23 C -0.224 4.224 24 N -0.553 5.553 25 Si 0.896 3.104 26 H -0.217 1.217 27 H -0.222 1.222 28 H -0.217 1.217 29 C 0.037 3.963 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.202 0.798 39 H 0.182 0.818 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.096 0.904 49 H 0.034 0.966 50 H 0.081 0.919 51 H 0.041 0.959 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.928 -9.783 11.548 21.258 hybrid contribution -1.016 0.037 -0.549 1.156 sum -15.944 -9.746 10.999 21.684 Atomic orbital electron populations 1.21790 0.94164 1.02388 1.02490 1.21803 0.96791 0.94525 1.03450 1.22153 0.73153 0.99147 1.02496 0.84723 1.22152 1.02502 1.00991 0.96038 1.45957 1.07409 1.31894 1.18796 1.73103 1.01654 1.17625 1.18496 1.23582 0.94371 1.02077 0.98306 1.22584 0.95267 1.03070 1.00716 1.21341 0.92297 1.05035 0.97575 1.16524 0.84918 0.78137 0.80490 1.90686 1.14353 1.63132 1.75229 1.49806 1.08984 1.51969 1.25053 1.23310 0.98329 0.92424 0.86220 1.22602 0.94162 0.94742 0.98921 1.23461 0.79170 0.97232 1.00455 1.21114 0.97737 0.95258 0.97976 1.21991 0.95184 1.00343 0.99978 1.20824 0.99367 0.88522 0.88920 1.44083 1.00690 1.30525 1.56486 1.19941 0.88889 0.91951 1.47193 0.92645 1.25837 1.02097 0.97002 0.97418 1.70716 1.29159 1.12026 1.43386 0.83515 0.75692 0.74550 0.76599 1.21747 1.22161 1.21670 1.20784 0.86397 0.98209 0.90956 0.91952 0.92013 0.92140 0.91506 0.90503 0.91316 0.92021 0.90098 0.79761 0.81849 0.90046 0.89328 0.89015 0.89581 0.91985 0.93090 0.92846 0.92305 0.90369 0.96568 0.91912 0.95886 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.69 37.16 0.36 -0.74 16 2 C -0.13 -1.23 5.49 -26.73 -0.15 -1.37 16 3 C 0.13 1.50 3.00 -67.93 -0.20 1.30 16 4 H 0.14 1.76 5.34 -51.93 -0.28 1.49 16 5 C -0.16 -1.55 9.22 37.16 0.34 -1.21 16 6 N -0.25 -3.44 3.09 -50.69 -0.16 -3.59 16 7 N -0.28 -3.71 11.56 30.59 0.35 -3.36 16 8 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 9 C -0.19 -2.45 10.07 -38.99 -0.39 -2.84 16 10 C -0.03 -0.50 6.96 -82.06 -0.57 -1.07 16 11 C 0.61 9.51 8.03 -12.64 -0.10 9.41 16 12 O -0.55 -9.57 15.11 5.25 0.08 -9.49 16 13 N -0.62 -8.96 3.45 -181.84 -0.63 -9.59 16 14 C 0.12 1.60 7.98 -3.18 -0.03 1.57 16 15 C -0.10 -1.52 0.87 -154.44 -0.13 -1.66 16 16 C 0.12 1.68 5.96 -3.17 -0.02 1.66 16 17 C -0.08 -1.27 5.02 -26.83 -0.13 -1.40 16 18 C -0.14 -2.32 5.99 -26.81 -0.16 -2.48 16 19 C 0.15 3.20 4.66 -4.00 -0.02 3.18 16 20 N -0.59 -13.32 2.83 -172.75 -0.49 -13.81 16 21 C -0.35 -8.97 9.48 -15.06 -0.14 -9.11 16 22 H 0.06 1.42 7.94 -52.49 -0.42 1.01 16 23 C -0.02 -0.55 4.67 -17.43 -0.08 -0.64 16 24 N -0.91 -26.08 12.46 55.49 0.69 -25.39 16 25 Si 1.07 24.09 29.99 -169.99 -5.10 18.99 16 26 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 29 C 0.16 2.98 5.71 -3.81 -0.02 2.96 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.60 6.56 -51.93 -0.34 0.26 16 38 H 0.19 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.16 1.96 5.42 -52.48 -0.28 1.68 16 40 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 41 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 42 H 0.09 1.28 7.97 -51.93 -0.41 0.87 16 43 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.76 8.02 -51.93 -0.42 0.34 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.06 1.03 7.37 -51.93 -0.38 0.64 16 48 H 0.08 1.92 6.37 -51.93 -0.33 1.59 16 49 H 0.02 0.36 7.94 -51.93 -0.41 -0.05 16 50 H 0.27 7.76 6.88 -40.82 -0.28 7.48 16 51 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.06 1.09 7.78 -51.93 -0.40 0.69 16 LS Contribution 402.16 15.07 6.06 6.06 Total: -1.00 -30.36 402.16 -9.32 -39.68 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.47 Total: 3.25 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.66 Total: -2.75 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.23 Total: -55.74 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.10 Total: 18.99 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.36 -9.32 -39.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981795779.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.007 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds