Wall clock time and date at job start Wed Apr 1 2020 04:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47201 * 2 1 4 4 H 1.09003 * 109.47090 * 305.31189 * 3 2 1 5 5 C 1.52999 * 109.47158 * 65.30703 * 3 2 1 6 6 N 1.46501 * 109.47446 * 185.30993 * 3 2 1 7 7 N 1.28446 * 125.18698 * 305.58547 * 6 3 2 8 8 C 1.30862 * 110.92337 * 180.27798 * 7 6 3 9 9 C 1.39668 * 107.86190 * 359.70570 * 8 7 6 10 10 C 1.36599 * 125.19153 * 125.36296 * 6 3 2 11 11 C 1.47161 * 126.88277 * 0.02562 * 10 6 3 12 12 O 1.21629 * 119.99955 * 1.51552 * 11 10 6 13 13 N 1.34778 * 119.99910 * 181.50911 * 11 10 6 14 14 C 1.47671 * 134.45592 * 174.46220 * 13 11 10 15 15 C 1.53439 * 85.97496 * 155.71627 * 14 13 11 16 16 C 1.47676 * 134.45293 * 354.47485 * 13 11 10 17 17 C 1.52621 * 113.71602 * 268.85564 * 15 14 13 18 18 C 1.53187 * 109.35809 * 171.27643 * 17 15 14 19 19 C 1.52663 * 109.42791 * 58.92249 * 18 17 15 20 20 N 1.46899 * 109.34830 * 303.77292 * 19 18 17 21 21 C 1.36938 * 120.69478 * 235.31327 * 20 19 18 22 22 H 1.07990 * 120.00578 * 150.08839 * 21 20 19 23 23 C 1.38819 * 119.99312 * 330.08785 * 21 20 19 24 24 N 1.31611 * 120.00430 * 334.91756 * 23 21 20 25 25 Si 1.86803 * 119.99573 * 154.91652 * 23 21 20 26 26 H 1.48498 * 109.47315 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47192 * 119.99991 * 25 23 21 28 28 H 1.48497 * 109.47225 * 239.99900 * 25 23 21 29 29 C 1.47119 * 118.61823 * 55.04170 * 20 19 18 30 30 H 1.08997 * 109.47204 * 180.78704 * 1 2 3 31 31 H 1.09003 * 109.47319 * 300.78813 * 1 2 3 32 32 H 1.09003 * 109.47344 * 60.78372 * 1 2 3 33 33 H 1.09002 * 109.47248 * 239.99976 * 2 1 3 34 34 H 1.08996 * 109.46989 * 120.00036 * 2 1 3 35 35 H 1.09003 * 109.46723 * 60.00261 * 5 3 2 36 36 H 1.09001 * 109.47511 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47367 * 300.00550 * 5 3 2 38 38 H 1.07999 * 126.06791 * 179.68159 * 8 7 6 39 39 H 1.08007 * 127.32244 * 180.02562 * 9 8 7 40 40 H 1.09005 * 113.79297 * 41.44697 * 14 13 11 41 41 H 1.09005 * 113.89743 * 269.99972 * 14 13 11 42 42 H 1.09001 * 113.79537 * 90.01637 * 16 13 11 43 43 H 1.09004 * 113.78843 * 318.53816 * 16 13 11 44 44 H 1.09006 * 109.49220 * 291.23511 * 17 15 14 45 45 H 1.08994 * 109.49463 * 51.30394 * 17 15 14 46 46 H 1.08996 * 109.49302 * 179.02548 * 18 17 15 47 47 H 1.09001 * 109.48478 * 299.09698 * 18 17 15 48 48 H 1.09000 * 109.43967 * 183.79128 * 19 18 17 49 49 H 1.08994 * 109.37021 * 63.71640 * 19 18 17 50 50 H 0.97004 * 120.00120 * 354.16715 * 24 23 21 51 51 H 1.08998 * 109.64156 * 68.57412 * 29 20 19 52 52 H 1.08999 * 109.64075 * 189.19372 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9831 -0.8386 5 6 1.6419 2.1242 1.3106 6 7 3.4994 1.4445 -0.1278 7 7 4.3104 0.8086 0.6388 8 6 5.5516 1.0107 0.2764 9 6 5.5409 1.8545 -0.8365 10 6 4.2051 2.1195 -1.0830 11 6 3.6553 2.9645 -2.1551 12 8 2.4544 3.1391 -2.2365 13 7 4.4826 3.5450 -3.0468 14 6 4.2853 4.3436 -4.2732 15 6 5.6825 4.9144 -3.9965 16 6 5.9496 3.6370 -3.1890 17 6 5.6703 6.1839 -3.1495 18 6 7.1055 6.5433 -2.7526 19 6 7.9437 6.7509 -4.0116 20 7 7.8740 5.5445 -4.8469 21 6 9.0163 4.8997 -5.2403 22 1 9.0034 3.8333 -5.4096 23 6 10.1908 5.6172 -5.4213 24 7 10.1406 6.9013 -5.7052 25 14 11.8428 4.7598 -5.2619 26 1 11.6275 3.3261 -4.9405 27 1 12.5851 4.8733 -6.5431 28 1 12.6292 5.3984 -4.1760 29 6 6.5513 5.0399 -5.2472 30 1 -0.3633 -1.0275 0.0141 31 1 -0.3634 0.5260 0.8828 32 1 -0.3634 0.5016 -0.8969 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0808 1.5836 2.1492 36 1 2.0056 3.1517 1.3108 37 1 0.5560 2.1227 1.4057 38 1 6.4284 0.5986 0.7536 39 1 6.3939 2.2220 -1.3878 40 1 3.4858 5.0802 -4.1944 41 1 4.2262 3.7472 -5.1837 42 1 6.3862 2.8289 -3.7759 43 1 6.4723 3.8125 -2.2487 44 1 5.2368 7.0014 -3.7257 45 1 5.0757 6.0163 -2.2515 46 1 7.1009 7.4594 -2.1620 47 1 7.5337 5.7324 -2.1634 48 1 8.9796 6.9403 -3.7306 49 1 7.5543 7.6029 -4.5687 50 1 9.2855 7.3282 -5.8714 51 1 6.0891 5.7375 -5.9457 52 1 6.6590 4.0628 -5.7180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981795779.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:31 Heat of formation + Delta-G solvation = 76.270802 kcal Electronic energy + Delta-G solvation = -31756.286074 eV Core-core repulsion = 27758.465306 eV Total energy + Delta-G solvation = -3997.820768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.64489 -41.84765 -39.56096 -37.79125 -37.38806 -34.59390 -32.76801 -32.52566 -32.24266 -30.95240 -29.99951 -27.55072 -27.39476 -27.03213 -25.87947 -24.03790 -23.80961 -23.28295 -22.25844 -21.35594 -20.23404 -19.37812 -19.20763 -18.47037 -17.61557 -17.27471 -16.64149 -16.59630 -16.24559 -16.17870 -15.88441 -15.41491 -15.29911 -15.14989 -15.07179 -14.79843 -14.63231 -14.32354 -14.02798 -13.94364 -13.69742 -13.41308 -13.27610 -13.22284 -12.93726 -12.82697 -12.76681 -12.69607 -12.47355 -12.15079 -12.01611 -11.89975 -11.84283 -11.83398 -11.72478 -11.55909 -11.31694 -11.04175 -10.97673 -10.37814 -10.33926 -10.06386 -9.79380 -8.82833 -8.14739 -5.32852 0.13578 1.18017 1.59530 1.65058 1.71154 1.83797 1.86531 2.06114 2.70428 3.07195 3.23612 3.36206 3.36991 3.66727 3.72126 3.76505 3.86865 3.89795 4.06244 4.09150 4.19597 4.27694 4.29644 4.33786 4.37362 4.41780 4.49296 4.50521 4.55500 4.58558 4.66572 4.70462 4.75382 4.81731 4.85966 4.88455 4.90154 4.91700 4.98976 5.02398 5.06536 5.15523 5.21017 5.26519 5.29238 5.36675 5.50575 5.52468 5.74116 5.95680 6.45333 6.48330 6.81417 7.04574 7.13742 7.85191 8.31522 9.09354 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017971 B = 0.002692 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.669888 B =10400.432994 C =11132.409725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.123 3.877 4 H 0.118 0.882 5 C -0.152 4.152 6 N -0.256 5.256 7 N -0.286 5.286 8 C -0.008 4.008 9 C -0.186 4.186 10 C -0.058 4.058 11 C 0.608 3.392 12 O -0.576 6.576 13 N -0.622 5.622 14 C 0.125 3.875 15 C -0.096 4.096 16 C 0.124 3.876 17 C -0.076 4.076 18 C -0.124 4.124 19 C 0.156 3.844 20 N -0.610 5.610 21 C -0.343 4.343 22 H 0.055 0.945 23 C -0.075 4.075 24 N -0.946 5.946 25 Si 1.111 2.889 26 H -0.269 1.269 27 H -0.298 1.298 28 H -0.292 1.292 29 C 0.164 3.836 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.215 0.785 39 H 0.173 0.827 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.041 0.959 49 H 0.003 0.997 50 H 0.255 0.745 51 H 0.021 0.979 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.017 -11.018 12.001 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.024 3.976 4 H 0.136 0.864 5 C -0.209 4.209 6 N -0.045 5.045 7 N -0.118 5.118 8 C -0.183 4.183 9 C -0.215 4.215 10 C -0.186 4.186 11 C 0.398 3.602 12 O -0.458 6.458 13 N -0.355 5.355 14 C 0.003 3.997 15 C -0.099 4.099 16 C 0.002 3.998 17 C -0.113 4.113 18 C -0.163 4.163 19 C 0.030 3.970 20 N -0.334 5.334 21 C -0.473 4.473 22 H 0.073 0.927 23 C -0.272 4.272 24 N -0.588 5.588 25 Si 0.937 3.063 26 H -0.194 1.194 27 H -0.225 1.225 28 H -0.219 1.219 29 C 0.039 3.961 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.123 0.877 38 H 0.232 0.768 39 H 0.190 0.810 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.021 0.979 50 H 0.065 0.935 51 H 0.039 0.961 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.952 -11.366 12.876 23.440 hybrid contribution -0.754 0.511 -0.988 1.343 sum -16.705 -10.854 11.889 23.200 Atomic orbital electron populations 1.21786 0.92305 1.03398 1.02938 1.21753 0.98310 0.93057 1.02682 1.22298 0.72387 1.00259 1.02664 0.86408 1.22122 1.04034 0.99795 0.94998 1.46199 1.08083 1.31661 1.18559 1.73100 1.02217 1.17820 1.18710 1.24126 0.94880 1.01439 0.97896 1.22763 0.94933 1.02894 1.00923 1.21404 0.93135 1.05957 0.98121 1.16681 0.84696 0.78138 0.80729 1.90675 1.15229 1.64036 1.75863 1.49760 1.08919 1.51722 1.25078 1.23350 0.97172 0.92549 0.86589 1.22398 0.94724 0.95231 0.97499 1.23434 0.79162 0.96726 1.00444 1.21048 0.96352 0.95459 0.98488 1.21828 0.95541 1.01180 0.97717 1.20667 0.97977 0.87859 0.90466 1.44278 1.01531 1.30553 1.57030 1.20181 0.89944 0.92034 1.45108 0.92694 1.27014 1.05364 0.97053 0.97730 1.70838 1.28143 1.13227 1.46602 0.82901 0.72365 0.74832 0.76160 1.19395 1.22515 1.21851 1.20860 0.84891 0.97878 0.92513 0.90710 0.90656 0.92553 0.92978 0.90437 0.91241 0.93413 0.87690 0.76794 0.80989 0.89328 0.87741 0.88594 0.89293 0.91543 0.91933 0.91229 0.92422 0.94027 0.97948 0.93549 0.96107 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.69 71.98 0.70 -1.19 16 2 C -0.12 -2.17 5.49 30.59 0.17 -2.01 16 3 C 0.12 2.75 3.00 44.99 0.14 2.88 16 4 H 0.12 3.06 5.34 -2.39 -0.01 3.05 16 5 C -0.15 -2.76 9.22 71.98 0.66 -2.09 16 6 N -0.26 -6.74 3.09 -314.29 -0.97 -7.71 16 7 N -0.29 -7.25 11.56 -57.14 -0.66 -7.91 16 8 C -0.01 -0.19 12.03 85.18 1.02 0.84 16 9 C -0.19 -4.54 10.07 22.65 0.23 -4.31 16 10 C -0.06 -1.63 6.96 40.78 0.28 -1.35 16 11 C 0.61 18.26 8.03 86.59 0.70 18.96 16 12 O -0.58 -19.52 15.11 -4.12 -0.06 -19.58 16 13 N -0.62 -16.72 3.45 -847.45 -2.92 -19.65 16 14 C 0.13 3.09 7.98 86.30 0.69 3.77 16 15 C -0.10 -2.70 0.87 -52.04 -0.05 -2.75 16 16 C 0.12 3.26 5.96 86.30 0.51 3.78 16 17 C -0.08 -2.17 5.02 30.53 0.15 -2.01 16 18 C -0.12 -4.09 5.99 30.55 0.18 -3.91 16 19 C 0.16 6.76 4.66 86.19 0.40 7.16 16 20 N -0.61 -27.30 2.83 -700.46 -1.98 -29.28 16 21 C -0.34 -17.50 9.48 84.04 0.80 -16.71 16 22 H 0.06 2.78 7.94 -2.92 -0.02 2.75 16 23 C -0.07 -4.03 4.67 84.87 0.40 -3.64 16 24 N -0.95 -55.47 12.46 21.65 0.27 -55.20 16 25 Si 1.11 48.73 29.99 68.60 2.06 50.78 16 26 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 27 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 28 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 29 C 0.16 5.83 5.71 86.19 0.49 6.32 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.76 6.54 -2.39 -0.02 0.75 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.34 6.56 -2.39 -0.02 1.33 16 38 H 0.22 3.22 8.06 -2.91 -0.02 3.19 16 39 H 0.17 3.78 5.42 -2.91 -0.02 3.76 16 40 H 0.09 2.10 8.09 -2.38 -0.02 2.09 16 41 H 0.10 2.28 8.09 -2.38 -0.02 2.26 16 42 H 0.10 2.49 7.97 -2.39 -0.02 2.47 16 43 H 0.09 2.32 5.88 -2.39 -0.01 2.31 16 44 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 45 H 0.06 1.69 8.02 -2.39 -0.02 1.67 16 46 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.06 1.93 7.37 -2.39 -0.02 1.91 16 48 H 0.04 2.10 6.37 -2.39 -0.02 2.08 16 49 H 0.00 0.11 7.94 -2.39 -0.02 0.09 16 50 H 0.25 15.21 6.88 -92.71 -0.64 14.58 16 51 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.06 2.17 7.78 -2.39 -0.02 2.15 16 Total: -1.00 -66.26 402.16 4.24 -62.02 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 1.04 Total: 22.78 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 7.48 Total: 3.75 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -6.27 Total: -119.75 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.06 Total: -19.58 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.06 Total: 50.78 kcal Total: -66.26 4.24 -62.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981795779.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.294 kcal (2) G-P(sol) polarization free energy of solvation -66.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds