Wall clock time and date at job start Wed Apr 1 2020 04:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46759 * 2 1 4 4 N 1.46499 * 109.47666 * 119.99745 * 2 1 3 5 5 C 1.35032 * 124.88387 * 275.00349 * 4 2 1 6 6 C 1.35367 * 107.22544 * 179.70874 * 5 4 2 7 7 C 1.41494 * 105.50551 * 0.26675 * 6 5 4 8 8 C 1.47709 * 126.51967 * 179.97438 * 7 6 5 9 9 O 1.21567 * 119.99904 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00082 * 179.97438 * 8 7 6 11 11 C 1.46940 * 125.40786 * 359.69072 * 10 8 7 12 12 C 1.54783 * 107.29080 * 181.46171 * 11 10 8 13 13 H 1.08999 * 112.14192 * 219.48896 * 12 11 10 14 14 C 1.52904 * 107.21457 * 97.18867 * 12 11 10 15 15 C 1.52847 * 109.68247 * 192.60017 * 14 12 11 16 16 C 1.52673 * 108.57651 * 65.12366 * 15 14 12 17 17 C 1.49527 * 110.48727 * 300.15740 * 16 15 14 18 18 H 1.09006 * 108.05837 * 284.66497 * 17 16 15 19 19 N 1.46501 * 107.23573 * 168.44851 * 17 16 15 20 20 C 1.36945 * 119.99801 * 78.28741 * 19 17 16 21 21 H 1.07998 * 120.00108 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99631 * 180.02562 * 20 19 17 23 23 N 1.31612 * 120.00190 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99548 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47003 * 60.00608 * 24 22 20 26 26 H 1.48507 * 109.46801 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47396 * 300.00195 * 24 22 20 28 28 C 1.49581 * 116.69436 * 46.88014 * 17 16 15 29 29 H 1.09001 * 107.98763 * 200.95944 * 28 17 16 30 30 C 1.47232 * 125.40570 * 180.02562 * 10 8 7 31 31 N 1.28473 * 124.88404 * 95.19025 * 4 2 1 32 32 H 1.09000 * 109.46796 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47090 * 299.99688 * 1 2 3 34 34 H 1.08998 * 109.47469 * 60.00072 * 1 2 3 35 35 H 1.09003 * 109.47063 * 239.99910 * 2 1 3 36 36 H 1.09000 * 109.46898 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.46817 * 299.99310 * 3 2 1 38 38 H 1.08990 * 109.47206 * 59.99876 * 3 2 1 39 39 H 1.08002 * 126.38962 * 359.97438 * 5 4 2 40 40 H 1.08008 * 127.24665 * 180.23443 * 6 5 4 41 41 H 1.09001 * 109.87869 * 301.01168 * 11 10 8 42 42 H 1.09001 * 109.87517 * 62.16410 * 11 10 8 43 43 H 1.08994 * 109.43693 * 312.66310 * 14 12 11 44 44 H 1.08997 * 109.43487 * 72.54261 * 14 12 11 45 45 H 1.08995 * 109.62209 * 184.84809 * 15 14 12 46 46 H 1.08999 * 109.62412 * 305.21683 * 15 14 12 47 47 H 1.09006 * 109.20780 * 60.30039 * 16 15 14 48 48 H 1.09006 * 109.21093 * 179.65264 * 16 15 14 49 49 H 0.96992 * 119.99871 * 258.29096 * 19 17 16 50 50 H 0.97003 * 120.00065 * 179.97438 * 23 22 20 51 51 H 1.09002 * 110.24179 * 317.52257 * 30 10 8 52 52 H 1.08993 * 110.24527 * 79.51404 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0185 -0.6905 1.1962 5 6 2.1849 -0.1150 2.4063 6 6 2.6425 -1.0729 3.2462 7 6 2.7434 -2.2465 2.4624 8 6 3.1996 -3.5741 2.9221 9 8 3.5351 -3.7342 4.0795 10 7 3.2438 -4.6078 2.0585 11 6 2.8613 -4.5498 0.6409 12 6 3.0390 -5.9726 0.0579 13 1 3.4522 -5.9546 -0.9506 14 6 1.6663 -6.6456 0.0805 15 6 1.8226 -8.1428 -0.1844 16 6 2.6016 -8.7628 0.9731 17 6 3.9521 -8.1321 1.0922 18 1 4.5798 -8.5239 0.2917 19 7 4.5230 -8.5667 2.3695 20 6 5.0670 -9.8180 2.4860 21 1 5.0757 -10.4843 1.6361 22 6 5.6074 -10.2299 3.6964 23 7 5.5965 -9.4180 4.7323 24 14 6.3489 -11.9370 3.8554 25 1 7.4716 -12.0805 2.8940 26 1 6.8545 -12.1302 5.2384 27 1 5.3110 -12.9570 3.5603 28 6 4.0031 -6.6381 1.0397 29 1 5.0159 -6.3454 0.7628 30 6 3.6765 -5.9762 2.3873 31 7 2.3533 -1.9299 1.2438 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 3.1299 1.4426 -0.0005 37 1 1.6766 1.9563 -0.8901 38 1 1.6766 1.9564 0.8899 39 1 1.9855 0.9161 2.6583 40 1 2.8811 -0.9640 4.2940 41 1 1.8210 -4.2373 0.5502 42 1 3.5080 -3.8506 0.1109 43 1 1.2051 -6.4962 1.0567 44 1 1.0337 -6.2052 -0.6902 45 1 0.8388 -8.6070 -0.2535 46 1 2.3653 -8.2949 -1.1173 47 1 2.0501 -8.6075 1.9004 48 1 2.7138 -9.8328 0.7976 49 1 4.5155 -7.9681 3.1327 50 1 5.9738 -9.7060 5.5782 51 1 4.5643 -5.9494 3.0191 52 1 2.8727 -6.5159 2.8878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992839207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:06 Heat of formation + Delta-G solvation = 57.066535 kcal Electronic energy + Delta-G solvation = -31506.892395 eV Core-core repulsion = 27508.238868 eV Total energy + Delta-G solvation = -3998.653527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.81243 -40.31005 -38.32769 -36.15964 -35.48089 -33.87492 -31.60961 -31.15088 -31.04194 -30.02325 -28.65570 -27.91179 -26.68962 -25.17342 -23.73026 -23.30109 -22.22680 -21.50299 -20.80318 -20.27215 -19.24506 -18.21280 -17.65541 -17.11808 -16.55858 -16.27111 -15.73126 -15.31618 -14.98081 -14.74688 -14.53624 -13.96692 -13.82509 -13.73135 -13.66808 -13.43821 -13.30504 -13.11994 -12.91508 -12.72799 -12.66378 -12.57917 -12.37355 -11.96551 -11.83720 -11.73067 -11.72803 -11.24532 -10.95511 -10.89787 -10.83153 -10.71548 -10.68652 -10.18924 -10.11129 -9.88785 -9.73731 -9.53379 -9.44425 -9.34348 -9.16261 -8.78515 -8.27480 -6.87390 -5.66942 -2.96554 1.59867 2.07641 2.19125 3.24070 3.49425 3.53586 3.55174 3.59342 3.92561 4.25436 4.44641 4.47138 4.55468 4.63162 4.72597 4.85263 4.88290 4.96712 5.00721 5.06499 5.19056 5.23235 5.41545 5.41797 5.50174 5.55109 5.56070 5.61759 5.63745 5.68834 5.70788 5.80019 5.88662 5.91934 5.95102 6.10354 6.17586 6.22445 6.29539 6.38221 6.45178 6.51180 6.55270 6.59859 6.70529 6.72404 6.84872 7.02299 7.27673 7.72969 7.77219 7.85177 8.43241 8.50983 9.61684 10.18740 10.53167 11.55346 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002608 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.317262 B =10733.003575 C =11898.917755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.142 3.858 3 C -0.165 4.165 4 N -0.281 5.281 5 C -0.021 4.021 6 C -0.179 4.179 7 C -0.008 4.008 8 C 0.610 3.390 9 O -0.530 6.530 10 N -0.603 5.603 11 C 0.117 3.883 12 C -0.091 4.091 13 H 0.090 0.910 14 C -0.109 4.109 15 C -0.118 4.118 16 C -0.126 4.126 17 C 0.190 3.810 18 H 0.041 0.959 19 N -0.732 5.732 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C -0.086 4.086 29 H 0.071 0.929 30 C 0.119 3.881 31 N -0.257 5.257 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.177 0.823 40 H 0.161 0.839 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.385 0.615 50 H 0.256 0.744 51 H 0.085 0.915 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.995 23.281 -14.269 29.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.041 3.959 3 C -0.223 4.223 4 N -0.070 5.070 5 C -0.164 4.164 6 C -0.207 4.207 7 C -0.168 4.168 8 C 0.396 3.604 9 O -0.404 6.404 10 N -0.336 5.336 11 C -0.006 4.006 12 C -0.110 4.110 13 H 0.108 0.892 14 C -0.147 4.147 15 C -0.157 4.157 16 C -0.166 4.166 17 C 0.080 3.920 18 H 0.059 0.941 19 N -0.375 5.375 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.214 1.214 28 C -0.106 4.106 29 H 0.089 0.911 30 C -0.002 4.002 31 N -0.092 5.092 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.195 0.805 40 H 0.179 0.821 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.221 0.779 50 H 0.066 0.934 51 H 0.103 0.897 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.907 22.695 -14.748 29.569 hybrid contribution 0.522 -0.357 1.173 1.332 sum -11.386 22.337 -13.576 28.511 Atomic orbital electron populations 1.22227 0.92887 1.03767 1.03434 1.21558 0.95482 0.93304 0.85523 1.22195 1.02578 0.93553 1.03937 1.45784 1.45590 1.06221 1.09434 1.22703 1.07299 1.00705 0.85658 1.21783 1.06574 0.91023 1.01334 1.21948 1.08068 0.96052 0.90741 1.16518 0.78221 0.81230 0.84430 1.90835 1.49293 1.83186 1.17130 1.48233 1.64501 1.10153 1.10695 1.22211 1.00490 0.96968 0.80925 1.21920 0.96439 0.93453 0.99216 0.89161 1.21562 0.95604 0.95963 1.01549 1.21473 0.99858 0.94970 0.99364 1.21532 0.97681 1.00198 0.97212 1.18686 0.93240 0.89175 0.90859 0.94114 1.42737 1.70741 1.16054 1.07970 1.19164 1.30593 0.91341 0.95903 0.91318 1.24736 1.01981 0.98087 0.96113 1.69652 1.51049 1.35582 1.01593 0.86310 0.79017 0.84460 0.76626 1.21397 1.21781 1.21381 1.21097 0.99324 0.96431 0.93768 0.91074 1.21977 1.00932 0.79633 0.97685 1.73641 1.16092 0.97407 1.22076 0.91283 0.91620 0.90065 0.87292 0.91220 0.89679 0.91223 0.80546 0.82138 0.91019 0.91657 0.91921 0.92492 0.92777 0.92392 0.92289 0.92056 0.77947 0.93446 0.89674 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 9.52 37.16 0.35 -0.39 16 2 C 0.14 0.78 3.80 -67.93 -0.26 0.53 16 3 C -0.16 -0.53 8.80 37.16 0.33 -0.21 16 4 N -0.28 -2.66 3.22 -54.83 -0.18 -2.84 16 5 C -0.02 -0.19 10.54 -17.17 -0.18 -0.37 16 6 C -0.18 -2.24 10.81 -39.37 -0.43 -2.67 16 7 C -0.01 -0.12 6.97 -82.77 -0.58 -0.70 16 8 C 0.61 11.17 7.85 -12.39 -0.10 11.07 16 9 O -0.53 -11.59 17.22 5.31 0.09 -11.49 16 10 N -0.60 -10.26 3.33 -172.40 -0.57 -10.84 16 11 C 0.12 1.60 4.98 -2.86 -0.01 1.58 16 12 C -0.09 -1.21 3.33 -89.81 -0.30 -1.51 16 13 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 14 C -0.11 -1.40 4.77 -26.86 -0.13 -1.53 16 15 C -0.12 -1.63 5.93 -26.98 -0.16 -1.79 16 16 C -0.13 -2.27 5.14 -28.61 -0.15 -2.42 16 17 C 0.19 3.73 2.49 -71.33 -0.18 3.56 16 18 H 0.04 0.83 8.06 -51.93 -0.42 0.41 16 19 N -0.73 -18.40 4.92 -56.77 -0.28 -18.68 16 20 C -0.24 -6.66 9.73 -15.06 -0.15 -6.81 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 24 Si 0.90 22.84 29.55 -169.99 -5.02 17.82 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C -0.09 -1.47 2.47 -92.05 -0.23 -1.70 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 C 0.12 2.27 4.69 -3.31 -0.02 2.25 16 31 N -0.26 -3.26 9.47 33.42 0.32 -2.94 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.07 0.18 7.05 -51.93 -0.37 -0.18 16 39 H 0.18 0.92 7.16 -52.49 -0.38 0.55 16 40 H 0.16 1.90 8.06 -52.48 -0.42 1.47 16 41 H 0.07 0.93 7.18 -51.93 -0.37 0.56 16 42 H 0.07 0.86 7.77 -51.93 -0.40 0.45 16 43 H 0.06 0.90 7.94 -51.93 -0.41 0.49 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 1.16 8.13 -51.93 -0.42 0.74 16 48 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.39 10.38 5.68 -40.82 -0.23 10.15 16 50 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 51 H 0.08 1.87 7.59 -51.93 -0.39 1.47 16 52 H 0.07 1.48 8.01 -51.93 -0.42 1.07 16 LS Contribution 405.89 15.07 6.12 6.12 Total: -1.00 -34.82 405.89 -9.93 -44.75 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.86 Total: 7.85 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.27 Total: -1.57 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: 0.01 Total: -63.47 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.82 -9.93 -44.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992839207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.812 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds