Wall clock time and date at job start Wed Apr 1 2020 04:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47240 * 2 1 4 4 N 1.46507 * 109.47018 * 119.99539 * 2 1 3 5 5 C 1.34252 * 125.75663 * 275.30887 * 4 2 1 6 6 C 1.38048 * 107.41664 * 180.10987 * 5 4 2 7 7 C 1.47430 * 126.41489 * 179.86994 * 6 5 4 8 8 O 1.21610 * 119.99784 * 359.71498 * 7 6 5 9 9 N 1.34775 * 120.00024 * 179.71215 * 7 6 5 10 10 C 1.48241 * 125.78527 * 0.02562 * 9 7 6 11 11 C 1.52323 * 105.86589 * 176.81160 * 10 9 7 12 12 H 1.08996 * 110.24321 * 272.17736 * 11 10 9 13 13 C 1.51440 * 117.45160 * 145.31518 * 11 10 9 14 14 C 1.53839 * 107.04105 * 181.22545 * 13 11 10 15 15 C 1.52534 * 111.66025 * 57.20239 * 14 13 11 16 16 C 1.53812 * 111.69914 * 305.95303 * 15 14 13 17 17 H 1.09003 * 109.94340 * 177.00064 * 16 15 14 18 18 N 1.46498 * 109.94201 * 298.16028 * 16 15 14 19 19 C 1.36945 * 119.99529 * 208.78535 * 18 16 15 20 20 H 1.08001 * 120.00080 * 0.27159 * 19 18 16 21 21 C 1.38811 * 119.99521 * 180.27740 * 19 18 16 22 22 N 1.31614 * 120.00419 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99676 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47365 * 59.99845 * 23 21 19 25 25 H 1.48501 * 109.47092 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46782 * 299.99498 * 23 21 19 27 27 C 1.51619 * 107.02500 * 57.53734 * 16 15 14 28 28 H 1.09000 * 110.50391 * 55.19712 * 27 16 15 29 29 C 1.48659 * 125.78076 * 179.97438 * 9 7 6 30 30 C 1.41287 * 107.16913 * 359.61233 * 6 5 4 31 31 N 1.30452 * 108.02589 * 0.23589 * 30 6 5 32 32 H 1.09004 * 109.47199 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47104 * 299.99984 * 1 2 3 34 34 H 1.08997 * 109.46999 * 60.00240 * 1 2 3 35 35 H 1.08996 * 109.47073 * 239.99755 * 2 1 3 36 36 H 1.08997 * 109.47551 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47309 * 300.00020 * 3 2 1 38 38 H 1.08996 * 109.47288 * 59.99886 * 3 2 1 39 39 H 1.07997 * 126.29042 * 359.96000 * 5 4 2 40 40 H 1.08995 * 110.17182 * 57.70965 * 10 9 7 41 41 H 1.09002 * 110.16910 * 295.90977 * 10 9 7 42 42 H 1.08997 * 109.94042 * 61.84464 * 13 11 10 43 43 H 1.08998 * 110.01235 * 300.65131 * 13 11 10 44 44 H 1.09000 * 109.04540 * 296.64133 * 14 13 11 45 45 H 1.09006 * 109.04564 * 177.76233 * 14 13 11 46 46 H 1.08994 * 109.03664 * 185.37912 * 15 14 13 47 47 H 1.08996 * 109.03267 * 66.52172 * 15 14 13 48 48 H 0.96999 * 120.00398 * 29.05616 * 18 16 15 49 49 H 0.97000 * 120.00392 * 180.02562 * 22 21 19 50 50 H 1.08997 * 110.62732 * 37.13782 * 29 9 7 51 51 H 1.08999 * 110.63168 * 274.11084 * 29 9 7 52 52 H 1.08002 * 125.98759 * 180.24552 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1848 -0.1376 2.4083 6 6 2.6618 -1.1225 3.2498 7 6 2.9923 -0.9686 4.6783 8 8 2.8555 0.1110 5.2211 9 7 3.4461 -2.0243 5.3826 10 6 3.6608 -3.3920 4.8528 11 6 4.2521 -4.1962 6.0034 12 1 5.3378 -4.1003 6.0118 13 6 3.8635 -5.6563 6.1068 14 6 4.5625 -6.2215 7.3552 15 6 4.1874 -5.4423 8.6117 16 6 4.4483 -3.9356 8.4456 17 1 4.1217 -3.4012 9.3378 18 7 5.8754 -3.6980 8.2154 19 6 6.4453 -2.5171 8.6107 20 1 5.8436 -1.7629 9.0960 21 6 7.7963 -2.2896 8.3873 22 7 8.5296 -3.2089 7.7962 23 14 8.5739 -0.6792 8.9271 24 1 8.4220 -0.5240 10.3961 25 1 10.0171 -0.6845 8.5771 26 1 7.9010 0.4510 8.2377 27 6 3.6469 -3.4763 7.2432 28 1 2.5951 -3.7356 7.3637 29 6 3.8169 -2.0142 6.8221 30 6 2.7683 -2.3071 2.4872 31 7 2.3837 -2.0394 1.2697 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6767 1.9563 0.8899 39 1 1.9848 0.8896 2.6752 40 1 4.3581 -3.3655 4.0154 41 1 2.7118 -3.8268 4.5389 42 1 4.1969 -6.1935 5.2189 43 1 2.7825 -5.7480 6.2124 44 1 5.6419 -6.1688 7.2130 45 1 4.2725 -7.2644 7.4837 46 1 4.7762 -5.8147 9.4500 47 1 3.1300 -5.5987 8.8246 48 1 6.4158 -4.3753 7.7795 49 1 9.4738 -3.0500 7.6404 50 1 3.1430 -1.3709 7.3878 51 1 4.8514 -1.6953 6.9500 52 1 3.1083 -3.2663 2.8489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992850239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:24 Heat of formation + Delta-G solvation = 58.323788 kcal Electronic energy + Delta-G solvation = -31669.001509 eV Core-core repulsion = 27670.402500 eV Total energy + Delta-G solvation = -3998.599009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.52210 -40.02084 -38.15129 -36.05901 -35.32967 -33.61137 -31.41553 -30.89729 -30.54294 -29.70113 -28.73031 -27.80012 -26.89207 -24.95786 -23.66669 -23.04037 -21.97650 -20.82054 -20.55995 -20.05392 -19.34669 -18.68230 -17.34394 -17.10466 -15.99704 -15.78081 -15.50061 -15.02735 -14.94728 -14.68654 -14.48711 -14.27889 -13.97149 -13.77370 -13.56307 -13.25517 -13.07883 -12.92679 -12.68945 -12.66702 -12.56632 -12.25689 -12.11295 -11.86568 -11.83049 -11.63418 -11.49338 -11.21937 -11.10368 -11.00177 -10.81760 -10.71110 -10.34862 -10.25333 -10.09923 -9.85029 -9.65904 -9.50757 -9.47496 -9.30413 -8.85498 -8.73399 -8.09829 -6.95292 -5.76287 -3.03901 1.54299 2.16064 2.23082 3.37257 3.47958 3.51938 3.54183 3.73689 4.07127 4.39083 4.56958 4.61210 4.61941 4.68503 4.76709 4.98874 5.01586 5.09092 5.15769 5.19080 5.25740 5.30938 5.40655 5.43298 5.54517 5.58683 5.61983 5.62936 5.65068 5.70958 5.75402 5.85264 5.92841 6.01128 6.05358 6.10782 6.18007 6.30512 6.33947 6.39754 6.44824 6.65186 6.69368 6.71357 6.74435 6.83850 6.92048 6.92893 7.17024 7.49584 7.72871 7.98771 8.42763 8.61611 9.54810 10.11422 10.46346 11.45859 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.003104 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.992220 B = 9019.797063 C =10457.181503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.359 5.359 5 C 0.123 3.877 6 C -0.281 4.281 7 C 0.604 3.396 8 O -0.559 6.559 9 N -0.610 5.610 10 C 0.110 3.890 11 C -0.110 4.110 12 H 0.106 0.894 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.122 4.122 16 C 0.188 3.812 17 H 0.055 0.945 18 N -0.715 5.715 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.009 4.009 22 N -0.931 5.931 23 Si 0.900 3.100 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.285 1.285 27 C -0.119 4.119 28 H 0.065 0.935 29 C 0.120 3.880 30 C 0.069 3.931 31 N -0.302 5.302 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.184 0.816 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.064 0.936 51 H 0.102 0.898 52 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 0.131 -14.350 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.051 3.949 3 C -0.227 4.227 4 N -0.139 5.139 5 C -0.028 4.028 6 C -0.296 4.296 7 C 0.393 3.607 8 O -0.439 6.439 9 N -0.343 5.343 10 C -0.013 4.013 11 C -0.128 4.128 12 H 0.124 0.876 13 C -0.136 4.136 14 C -0.152 4.152 15 C -0.160 4.160 16 C 0.077 3.923 17 H 0.073 0.927 18 N -0.357 5.357 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.205 4.205 22 N -0.580 5.580 23 Si 0.731 3.269 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.211 1.211 27 C -0.141 4.141 28 H 0.083 0.917 29 C -0.001 4.001 30 C -0.118 4.118 31 N -0.121 5.121 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.200 0.800 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.082 0.918 51 H 0.120 0.880 52 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -16.334 0.517 -15.339 22.413 hybrid contribution 0.819 0.980 0.834 1.525 sum -15.515 1.497 -14.505 21.292 Atomic orbital electron populations 1.22255 0.93354 1.03469 1.03297 1.21365 0.95000 0.92918 0.85662 1.22244 1.02677 0.93795 1.03947 1.48750 1.49108 1.07706 1.08295 1.22803 0.95952 0.99493 0.84541 1.20299 1.18740 0.94612 0.95970 1.16836 0.76695 0.82837 0.84304 1.90747 1.55946 1.25834 1.71420 1.48927 1.64267 1.09111 1.11987 1.21959 0.99344 0.82652 0.97351 1.21903 1.03251 0.94009 0.93678 0.87638 1.21254 0.99705 0.94683 0.97918 1.21457 1.01274 0.98071 0.94366 1.21810 1.00134 0.96501 0.97589 1.19915 0.86015 0.92378 0.94036 0.92733 1.42440 1.02999 1.19045 1.71207 1.19175 0.92116 0.93914 1.31686 0.91158 1.24679 0.96531 0.97892 1.01441 1.69629 1.06670 1.33802 1.47852 0.86368 0.78351 0.83815 0.78333 1.21310 1.21829 1.21135 1.22831 0.98907 0.94118 0.98281 0.91701 1.22186 1.02650 0.96852 0.78402 1.24795 0.97128 0.99701 0.90193 1.77162 1.21411 0.92726 1.20835 0.91479 0.91696 0.90285 0.87638 0.91193 0.89746 0.91212 0.79951 0.91343 0.91884 0.92267 0.92409 0.91402 0.92928 0.91922 0.92878 0.77998 0.93522 0.91793 0.87969 0.78443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 9.52 37.16 0.35 -0.65 16 2 C 0.15 1.13 3.91 -67.93 -0.27 0.86 16 3 C -0.17 -0.96 8.83 37.15 0.33 -0.63 16 4 N -0.36 -4.08 3.49 -54.31 -0.19 -4.27 16 5 C 0.12 1.56 10.39 -16.56 -0.17 1.39 16 6 C -0.28 -4.26 6.09 -105.07 -0.64 -4.90 16 7 C 0.60 11.06 7.86 -12.52 -0.10 10.96 16 8 O -0.56 -11.99 17.19 5.27 0.09 -11.90 16 9 N -0.61 -10.67 3.38 -172.11 -0.58 -11.26 16 10 C 0.11 1.57 4.67 -3.43 -0.02 1.56 16 11 C -0.11 -1.69 2.24 -90.36 -0.20 -1.89 16 12 H 0.11 2.02 6.53 -51.93 -0.34 1.68 16 13 C -0.10 -1.25 5.70 -27.08 -0.15 -1.41 16 14 C -0.11 -1.60 5.57 -26.53 -0.15 -1.74 16 15 C -0.12 -1.85 5.51 -26.55 -0.15 -1.99 16 16 C 0.19 3.42 3.01 -68.21 -0.21 3.21 16 17 H 0.05 1.04 8.06 -51.93 -0.42 0.62 16 18 N -0.72 -16.21 3.84 -53.69 -0.21 -16.41 16 19 C -0.24 -6.19 8.10 -15.06 -0.12 -6.31 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 23 Si 0.90 22.35 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 26 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 27 C -0.12 -1.98 2.35 -89.87 -0.21 -2.19 16 28 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16 29 C 0.12 2.28 6.44 -2.80 -0.02 2.26 16 30 C 0.07 0.93 10.49 -16.98 -0.18 0.75 16 31 N -0.30 -4.04 12.50 30.86 0.39 -3.65 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.39 7.13 -51.93 -0.37 0.02 16 39 H 0.18 1.96 7.24 -52.49 -0.38 1.58 16 40 H 0.07 0.94 6.71 -51.93 -0.35 0.59 16 41 H 0.06 0.77 7.13 -51.93 -0.37 0.40 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 44 H 0.07 1.10 7.03 -51.93 -0.36 0.73 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.38 9.30 5.95 -40.82 -0.24 9.06 16 49 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 51 H 0.10 2.33 6.14 -51.93 -0.32 2.01 16 52 H 0.20 2.29 4.47 -52.49 -0.23 2.06 16 LS Contribution 398.59 15.07 6.01 6.01 Total: -1.00 -32.38 398.59 -9.20 -41.58 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -8.41 Total: 9.98 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.99 Total: -1.07 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.13 Total: -61.93 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.38 -9.20 -41.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992850239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.907 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds