Wall clock time and date at job start Wed Apr 1 2020 04:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47240 * 2 1 4 4 N 1.46507 * 109.47018 * 119.99539 * 2 1 3 5 5 C 1.34252 * 125.75663 * 275.30887 * 4 2 1 6 6 C 1.38048 * 107.41664 * 180.10987 * 5 4 2 7 7 C 1.47430 * 126.41489 * 179.86994 * 6 5 4 8 8 O 1.21610 * 119.99784 * 359.71498 * 7 6 5 9 9 N 1.34775 * 120.00024 * 179.71215 * 7 6 5 10 10 C 1.48241 * 125.78527 * 0.02562 * 9 7 6 11 11 C 1.52323 * 105.86589 * 176.81160 * 10 9 7 12 12 H 1.08996 * 110.24321 * 272.17736 * 11 10 9 13 13 C 1.51440 * 117.45160 * 145.31518 * 11 10 9 14 14 C 1.53839 * 107.04105 * 181.22545 * 13 11 10 15 15 C 1.52534 * 111.66025 * 57.20239 * 14 13 11 16 16 C 1.53812 * 111.69914 * 305.95303 * 15 14 13 17 17 H 1.09003 * 109.94340 * 177.00064 * 16 15 14 18 18 N 1.46498 * 109.94201 * 298.16028 * 16 15 14 19 19 C 1.36945 * 119.99529 * 208.78535 * 18 16 15 20 20 H 1.08001 * 120.00080 * 0.27159 * 19 18 16 21 21 C 1.38811 * 119.99521 * 180.27740 * 19 18 16 22 22 N 1.31614 * 120.00419 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99676 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47365 * 59.99845 * 23 21 19 25 25 H 1.48501 * 109.47092 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46782 * 299.99498 * 23 21 19 27 27 C 1.51619 * 107.02500 * 57.53734 * 16 15 14 28 28 H 1.09000 * 110.50391 * 55.19712 * 27 16 15 29 29 C 1.48659 * 125.78076 * 179.97438 * 9 7 6 30 30 C 1.41287 * 107.16913 * 359.61233 * 6 5 4 31 31 N 1.30452 * 108.02589 * 0.23589 * 30 6 5 32 32 H 1.09004 * 109.47199 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47104 * 299.99984 * 1 2 3 34 34 H 1.08997 * 109.46999 * 60.00240 * 1 2 3 35 35 H 1.08996 * 109.47073 * 239.99755 * 2 1 3 36 36 H 1.08997 * 109.47551 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47309 * 300.00020 * 3 2 1 38 38 H 1.08996 * 109.47288 * 59.99886 * 3 2 1 39 39 H 1.07997 * 126.29042 * 359.96000 * 5 4 2 40 40 H 1.08995 * 110.17182 * 57.70965 * 10 9 7 41 41 H 1.09002 * 110.16910 * 295.90977 * 10 9 7 42 42 H 1.08997 * 109.94042 * 61.84464 * 13 11 10 43 43 H 1.08998 * 110.01235 * 300.65131 * 13 11 10 44 44 H 1.09000 * 109.04540 * 296.64133 * 14 13 11 45 45 H 1.09006 * 109.04564 * 177.76233 * 14 13 11 46 46 H 1.08994 * 109.03664 * 185.37912 * 15 14 13 47 47 H 1.08996 * 109.03267 * 66.52172 * 15 14 13 48 48 H 0.96999 * 120.00398 * 29.05616 * 18 16 15 49 49 H 0.97000 * 120.00392 * 180.02562 * 22 21 19 50 50 H 1.08997 * 110.62732 * 37.13782 * 29 9 7 51 51 H 1.08999 * 110.63168 * 274.11084 * 29 9 7 52 52 H 1.08002 * 125.98759 * 180.24552 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1848 -0.1376 2.4083 6 6 2.6618 -1.1225 3.2498 7 6 2.9923 -0.9686 4.6783 8 8 2.8555 0.1110 5.2211 9 7 3.4461 -2.0243 5.3826 10 6 3.6608 -3.3920 4.8528 11 6 4.2521 -4.1962 6.0034 12 1 5.3378 -4.1003 6.0118 13 6 3.8635 -5.6563 6.1068 14 6 4.5625 -6.2215 7.3552 15 6 4.1874 -5.4423 8.6117 16 6 4.4483 -3.9356 8.4456 17 1 4.1217 -3.4012 9.3378 18 7 5.8754 -3.6980 8.2154 19 6 6.4453 -2.5171 8.6107 20 1 5.8436 -1.7629 9.0960 21 6 7.7963 -2.2896 8.3873 22 7 8.5296 -3.2089 7.7962 23 14 8.5739 -0.6792 8.9271 24 1 8.4220 -0.5240 10.3961 25 1 10.0171 -0.6845 8.5771 26 1 7.9010 0.4510 8.2377 27 6 3.6469 -3.4763 7.2432 28 1 2.5951 -3.7356 7.3637 29 6 3.8169 -2.0142 6.8221 30 6 2.7683 -2.3071 2.4872 31 7 2.3837 -2.0394 1.2697 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6767 1.9563 0.8899 39 1 1.9848 0.8896 2.6752 40 1 4.3581 -3.3655 4.0154 41 1 2.7118 -3.8268 4.5389 42 1 4.1969 -6.1935 5.2189 43 1 2.7825 -5.7480 6.2124 44 1 5.6419 -6.1688 7.2130 45 1 4.2725 -7.2644 7.4837 46 1 4.7762 -5.8147 9.4500 47 1 3.1300 -5.5987 8.8246 48 1 6.4158 -4.3753 7.7795 49 1 9.4738 -3.0500 7.6404 50 1 3.1430 -1.3709 7.3878 51 1 4.8514 -1.6953 6.9500 52 1 3.1083 -3.2663 2.8489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992850239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:23 Heat of formation + Delta-G solvation = 38.446517 kcal Electronic energy + Delta-G solvation = -31669.863452 eV Core-core repulsion = 27670.402500 eV Total energy + Delta-G solvation = -3999.460952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.54296 -41.34797 -39.54748 -36.90987 -36.65340 -35.31568 -33.07197 -32.12921 -31.51108 -30.96126 -30.24350 -28.27699 -28.23972 -26.29300 -25.34409 -24.17804 -23.12197 -22.01579 -21.80828 -20.95623 -20.57808 -20.08892 -19.11430 -18.36041 -17.25535 -16.94529 -16.57346 -16.50684 -16.10844 -15.98400 -15.67633 -15.57540 -15.22622 -15.12566 -14.91291 -14.44311 -14.17563 -14.02053 -13.84118 -13.64988 -13.45675 -13.25388 -13.18923 -13.12332 -13.06853 -12.81156 -12.62084 -12.55282 -12.41588 -12.35181 -12.30135 -12.14164 -11.95583 -11.76858 -11.58522 -11.29683 -11.07314 -10.91315 -10.84023 -10.60540 -10.52439 -9.87378 -9.47425 -8.90113 -7.89372 -5.12640 0.48849 1.12861 1.32334 1.44920 1.47225 1.51560 2.05499 2.43301 2.58206 3.33394 3.42502 3.51468 3.71853 3.74483 3.86211 3.89934 3.94086 3.99681 4.07130 4.14077 4.32869 4.33462 4.41891 4.44710 4.51345 4.56985 4.60052 4.68577 4.70707 4.73971 4.76441 4.76710 4.79310 4.85392 4.89337 4.99328 5.11703 5.14483 5.16736 5.18294 5.25071 5.31672 5.41863 5.45424 5.48717 5.54034 5.60672 5.62775 5.81368 5.87011 6.34347 6.49104 6.63606 7.21162 7.42218 8.20646 8.43671 9.33535 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.003104 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.992220 B = 9019.797063 C =10457.181503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 C -0.165 4.165 4 N -0.349 5.349 5 C 0.133 3.867 6 C -0.311 4.311 7 C 0.597 3.403 8 O -0.603 6.603 9 N -0.614 5.614 10 C 0.110 3.890 11 C -0.100 4.100 12 H 0.062 0.938 13 C -0.089 4.089 14 C -0.112 4.112 15 C -0.114 4.114 16 C 0.178 3.822 17 H 0.044 0.956 18 N -0.720 5.720 19 C -0.219 4.219 20 H 0.067 0.933 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.950 3.050 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.291 1.291 27 C -0.109 4.109 28 H 0.094 0.906 29 C 0.121 3.879 30 C 0.072 3.928 31 N -0.316 5.316 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.199 0.801 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.037 0.963 45 H 0.081 0.919 46 H 0.050 0.950 47 H 0.085 0.915 48 H 0.377 0.623 49 H 0.247 0.753 50 H 0.053 0.947 51 H 0.056 0.944 52 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.887 -0.847 -16.193 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.042 3.958 3 C -0.223 4.223 4 N -0.128 5.128 5 C -0.021 4.021 6 C -0.326 4.326 7 C 0.389 3.611 8 O -0.487 6.487 9 N -0.345 5.345 10 C -0.011 4.011 11 C -0.119 4.119 12 H 0.081 0.919 13 C -0.126 4.126 14 C -0.150 4.150 15 C -0.153 4.153 16 C 0.069 3.931 17 H 0.062 0.938 18 N -0.361 5.361 19 C -0.351 4.351 20 H 0.085 0.915 21 C -0.262 4.262 22 N -0.615 5.615 23 Si 0.781 3.219 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.218 1.218 27 C -0.131 4.131 28 H 0.112 0.888 29 C -0.001 4.001 30 C -0.114 4.114 31 N -0.135 5.135 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.215 0.785 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.056 0.944 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.211 0.789 49 H 0.056 0.944 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -19.187 -0.491 -17.202 25.774 hybrid contribution 1.577 1.352 1.348 2.476 sum -17.610 0.861 -15.854 23.711 Atomic orbital electron populations 1.22231 0.91940 1.03024 1.04550 1.21813 0.96082 0.93611 0.84301 1.22264 1.01890 0.92746 1.05400 1.49147 1.47607 1.07128 1.08872 1.23037 0.94529 0.99799 0.84688 1.20146 1.21467 0.96400 0.94576 1.17346 0.76005 0.82233 0.85498 1.90705 1.58017 1.27434 1.72553 1.48998 1.63814 1.10415 1.11266 1.22146 1.01205 0.80808 0.96925 1.21791 1.00605 0.96177 0.93321 0.91927 1.21249 1.01179 0.92166 0.98047 1.21446 0.99620 0.99602 0.94304 1.21730 1.01898 0.93623 0.98005 1.20183 0.83599 0.95048 0.94261 0.93806 1.42537 1.04975 1.17663 1.70896 1.19415 0.91922 0.94617 1.29135 0.91476 1.25243 0.97413 1.00348 1.03196 1.69751 1.06294 1.35222 1.50249 0.85550 0.77156 0.80990 0.78164 1.20541 1.22325 1.21826 1.22665 1.00115 0.92346 0.97944 0.88802 1.21919 0.99627 0.98498 0.80035 1.24967 0.96745 0.99818 0.89877 1.77127 1.21785 0.93915 1.20709 0.92722 0.92018 0.87465 0.86911 0.92402 0.86971 0.91121 0.78453 0.90755 0.88322 0.90325 0.89623 0.94426 0.90083 0.93115 0.89653 0.78915 0.94383 0.92827 0.92561 0.76947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.52 71.98 0.69 -0.83 16 2 C 0.14 1.77 3.91 44.99 0.18 1.95 16 3 C -0.17 -1.48 8.83 71.98 0.64 -0.85 16 4 N -0.35 -7.32 3.49 -325.75 -1.14 -8.46 16 5 C 0.13 3.23 10.39 84.28 0.88 4.11 16 6 C -0.31 -9.20 6.09 -20.15 -0.12 -9.32 16 7 C 0.60 22.16 7.86 86.66 0.68 22.84 16 8 O -0.60 -26.74 17.19 -4.06 -0.07 -26.81 16 9 N -0.61 -21.50 3.38 -816.69 -2.76 -24.27 16 10 C 0.11 2.98 4.67 85.82 0.40 3.38 16 11 C -0.10 -2.94 2.24 -10.63 -0.02 -2.96 16 12 H 0.06 2.44 6.53 -2.39 -0.02 2.42 16 13 C -0.09 -1.96 5.70 30.37 0.17 -1.78 16 14 C -0.11 -2.86 5.57 30.72 0.17 -2.69 16 15 C -0.11 -3.23 5.51 30.71 0.17 -3.06 16 16 C 0.18 6.45 3.01 44.81 0.13 6.59 16 17 H 0.04 1.67 8.06 -2.39 -0.02 1.65 16 18 N -0.72 -33.67 3.84 -323.79 -1.24 -34.91 16 19 C -0.22 -11.80 8.10 84.03 0.68 -11.12 16 20 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 22 N -0.96 -58.24 13.06 21.65 0.28 -57.95 16 23 Si 0.95 47.66 29.55 68.60 2.03 49.69 16 24 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 26 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 27 C -0.11 -3.51 2.35 -10.31 -0.02 -3.54 16 28 H 0.09 2.56 8.01 -2.39 -0.02 2.54 16 29 C 0.12 4.75 6.44 86.00 0.55 5.31 16 30 C 0.07 1.84 10.49 85.65 0.90 2.74 16 31 N -0.32 -7.87 12.50 -56.27 -0.70 -8.58 16 32 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.63 16 34 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.07 0.64 7.13 -2.39 -0.02 0.62 16 39 H 0.20 4.07 7.24 -2.91 -0.02 4.04 16 40 H 0.07 1.94 6.71 -2.39 -0.02 1.93 16 41 H 0.10 2.02 7.13 -2.39 -0.02 2.00 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.50 8.03 -2.39 -0.02 1.49 16 44 H 0.04 1.19 7.03 -2.39 -0.02 1.17 16 45 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.38 18.94 5.95 -92.71 -0.55 18.39 16 49 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 50 H 0.05 2.16 8.07 -2.39 -0.02 2.14 16 51 H 0.06 2.72 6.14 -2.39 -0.01 2.71 16 52 H 0.21 4.42 4.47 -2.91 -0.01 4.40 16 Total: -1.00 -74.79 398.59 3.30 -71.49 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.37 Total: 32.56 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.53 Total: 7.24 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -5.56 Total: -134.16 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.07 Total: -26.81 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -74.79 3.30 -71.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992850239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.935 kcal (2) G-P(sol) polarization free energy of solvation -74.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds