Wall clock time and date at job start Wed Apr 1 2020 04:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47003 * 2 1 4 4 N 1.46502 * 109.46779 * 119.99903 * 2 1 3 5 5 N 1.39940 * 125.75250 * 299.97430 * 4 2 1 6 6 C 1.30452 * 108.89419 * 179.77288 * 5 4 2 7 7 C 1.41280 * 108.02147 * 0.38653 * 6 5 4 8 8 C 1.47435 * 126.41281 * 179.87998 * 7 6 5 9 9 O 1.21607 * 119.99914 * 237.37222 * 8 7 6 10 10 N 1.34774 * 120.00110 * 57.36888 * 8 7 6 11 11 C 1.46920 * 120.63252 * 355.32800 * 10 8 7 12 12 C 1.53190 * 108.77826 * 233.58867 * 11 10 8 13 13 C 1.53036 * 109.33858 * 305.34561 * 12 11 10 14 14 C 1.53110 * 109.50393 * 61.34844 * 13 12 11 15 15 H 1.08997 * 109.48700 * 58.61239 * 14 13 12 16 16 N 1.46497 * 109.51909 * 178.68544 * 14 13 12 17 17 C 1.36931 * 120.00440 * 204.87185 * 16 14 13 18 18 H 1.08007 * 119.99539 * 359.97438 * 17 16 14 19 19 C 1.38804 * 120.00398 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00421 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00089 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47079 * 90.00103 * 21 19 17 23 23 H 1.48496 * 109.47313 * 210.00331 * 21 19 17 24 24 H 1.48508 * 109.47161 * 330.00156 * 21 19 17 25 25 C 1.46928 * 120.62948 * 175.30477 * 10 8 7 26 26 C 1.34259 * 125.75813 * 120.00031 * 4 2 1 27 27 C 1.50705 * 126.28542 * 359.96016 * 26 4 2 28 28 C 1.53003 * 117.49489 * 196.00104 * 27 26 4 29 29 C 1.52998 * 59.99898 * 252.51053 * 28 27 26 30 30 H 1.08999 * 109.47095 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47824 * 300.00329 * 1 2 3 32 32 H 1.09011 * 109.46717 * 60.00664 * 1 2 3 33 33 H 1.08998 * 109.47111 * 239.99467 * 2 1 3 34 34 H 1.09010 * 109.46829 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47229 * 299.99327 * 3 2 1 36 36 H 1.09000 * 109.47273 * 60.00173 * 3 2 1 37 37 H 1.07997 * 125.98549 * 180.26387 * 6 5 4 38 38 H 1.09004 * 109.58953 * 113.79445 * 11 10 8 39 39 H 1.09004 * 109.70547 * 353.44203 * 11 10 8 40 40 H 1.08999 * 109.50090 * 65.31307 * 12 11 10 41 41 H 1.09000 * 109.49767 * 185.37963 * 12 11 10 42 42 H 1.08995 * 109.46273 * 181.40105 * 13 12 11 43 43 H 1.09004 * 109.46014 * 301.36557 * 13 12 11 44 44 H 0.97008 * 119.99655 * 24.87032 * 16 14 13 45 45 H 0.96995 * 120.00614 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.58820 * 246.20059 * 25 10 8 47 47 H 1.09000 * 109.58879 * 6.63135 * 25 10 8 48 48 H 1.08998 * 115.54868 * 341.70005 * 27 26 4 49 49 H 1.09007 * 117.49631 * 359.97438 * 28 27 26 50 50 H 1.08998 * 117.49760 * 145.01970 * 28 27 26 51 51 H 1.09002 * 117.50040 * 252.51234 * 29 28 27 52 52 H 1.08997 * 117.50311 * 107.48864 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 7 1.7558 -0.3186 2.5195 6 6 2.3461 -1.1623 3.3205 7 6 3.0257 -2.1146 2.5285 8 6 3.8276 -3.2498 3.0204 9 8 4.9934 -3.3581 2.6920 10 7 3.2685 -4.1674 3.8339 11 6 1.8932 -3.9966 4.3215 12 6 1.8954 -4.1000 5.8500 13 6 2.5505 -5.4184 6.2678 14 6 4.0012 -5.4459 5.7789 15 1 4.5428 -4.5989 6.1998 16 7 4.6380 -6.6943 6.2058 17 6 5.9981 -6.7539 6.3529 18 1 6.6014 -5.8804 6.1538 19 6 6.6013 -7.9366 6.7578 20 7 7.9086 -7.9936 6.8996 21 14 5.5577 -9.4469 7.1028 22 1 5.4081 -10.2404 5.8565 23 1 6.2172 -10.2774 8.1422 24 1 4.2180 -9.0236 7.5839 25 6 4.0228 -5.3578 4.2496 26 6 2.7933 -1.7868 1.2078 27 6 3.3136 -2.5241 0.0008 28 6 3.8557 -3.9385 0.2165 29 6 4.8193 -2.7857 -0.0723 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8902 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.3214 -1.1360 4.3999 38 1 1.2576 -4.7773 3.9034 39 1 1.5157 -3.0188 4.0221 40 1 2.4569 -3.2656 6.2702 41 1 0.8699 -4.0706 6.2181 42 1 2.5308 -5.5055 7.3541 43 1 2.0031 -6.2516 5.8269 44 1 4.0960 -7.4789 6.3842 45 1 8.3302 -8.8202 7.1822 46 1 3.5609 -6.2495 3.8257 47 1 5.0530 -5.2772 3.9028 48 1 2.7918 -2.3219 -0.9345 49 1 3.8364 -4.3356 1.2315 50 1 3.6905 -4.6672 -0.5771 51 1 5.2881 -2.7560 -1.0559 52 1 5.4335 -2.4245 0.7525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000653293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:57 Heat of formation + Delta-G solvation = 87.314103 kcal Electronic energy + Delta-G solvation = -31818.171661 eV Core-core repulsion = 27820.829767 eV Total energy + Delta-G solvation = -3997.341894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.81832 -39.58736 -37.64207 -36.68026 -35.95057 -34.51501 -32.26353 -31.31932 -30.90877 -30.08474 -28.52017 -27.73790 -25.48849 -24.06661 -23.55776 -23.26954 -22.44646 -21.74732 -21.42362 -20.20912 -19.40559 -18.60607 -17.57214 -17.51430 -16.69820 -15.87225 -15.38059 -15.15720 -14.89291 -14.74995 -14.65991 -14.41129 -14.22535 -13.97701 -13.68802 -13.62930 -13.28810 -13.04697 -12.76176 -12.70771 -12.65568 -12.48212 -12.40771 -11.85096 -11.83639 -11.68572 -11.58969 -11.37433 -11.16110 -11.07270 -10.93586 -10.89553 -10.68324 -10.56438 -10.47712 -10.25147 -9.85833 -9.59850 -9.53481 -9.35533 -9.06512 -8.55552 -8.27370 -7.25692 -5.74168 -3.11328 1.48485 2.09861 2.26196 3.05362 3.35420 3.39584 3.41339 3.47151 3.80719 4.04324 4.16773 4.44885 4.49280 4.60391 4.64896 4.67721 4.76375 4.88943 4.92465 4.94841 5.08620 5.09333 5.21307 5.24613 5.28810 5.30652 5.41198 5.44960 5.49106 5.51457 5.63971 5.65658 5.70014 5.73334 5.76158 5.82429 5.85951 5.96015 6.07511 6.09931 6.13095 6.26245 6.29130 6.32702 6.45212 6.71860 6.75991 6.78490 6.97676 7.47372 7.73098 8.02368 8.44060 8.50825 9.21982 9.93633 10.12295 11.43918 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018827 B = 0.002762 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.869362 B =10134.015990 C =10908.002428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 C -0.161 4.161 4 N -0.354 5.354 5 N -0.293 5.293 6 C 0.079 3.921 7 C -0.282 4.282 8 C 0.593 3.407 9 O -0.533 6.533 10 N -0.601 5.601 11 C 0.106 3.894 12 C -0.129 4.129 13 C -0.129 4.129 14 C 0.173 3.827 15 H 0.060 0.940 16 N -0.743 5.743 17 C -0.245 4.245 18 H 0.092 0.908 19 C 0.006 3.994 20 N -0.931 5.931 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.094 3.906 26 C 0.172 3.828 27 C -0.126 4.126 28 C -0.158 4.158 29 C -0.146 4.146 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.188 0.812 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.362 0.638 45 H 0.259 0.741 46 H 0.059 0.941 47 H 0.096 0.904 48 H 0.114 0.886 49 H 0.110 0.890 50 H 0.098 0.902 51 H 0.097 0.903 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.868 16.301 -15.767 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 C -0.219 4.219 4 N -0.134 5.134 5 N -0.112 5.112 6 C -0.107 4.107 7 C -0.297 4.297 8 C 0.380 3.620 9 O -0.410 6.410 10 N -0.334 5.334 11 C -0.018 4.018 12 C -0.168 4.168 13 C -0.167 4.167 14 C 0.063 3.937 15 H 0.078 0.922 16 N -0.385 5.385 17 C -0.375 4.375 18 H 0.110 0.890 19 C -0.190 4.190 20 N -0.579 5.579 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.030 4.030 26 C 0.041 3.959 27 C -0.146 4.146 28 C -0.196 4.196 29 C -0.184 4.184 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.205 0.795 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.195 0.805 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.115 0.885 48 H 0.132 0.868 49 H 0.129 0.871 50 H 0.117 0.883 51 H 0.115 0.885 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.782 17.423 -16.089 30.252 hybrid contribution -0.290 -1.904 0.379 1.963 sum -19.072 15.519 -15.710 29.178 Atomic orbital electron populations 1.22136 0.93072 1.03086 1.03562 1.21376 0.95680 0.94089 0.83637 1.22129 1.02026 0.94210 1.03499 1.48470 1.38483 1.20690 1.05781 1.77085 1.24633 1.23297 0.86192 1.23902 0.94786 0.92121 0.99923 1.19943 1.13488 1.04254 0.92013 1.17257 0.85976 0.80770 0.77969 1.90787 1.16115 1.75991 1.58157 1.48116 1.14556 1.22984 1.47744 1.21779 0.83182 1.02328 0.94492 1.21878 1.00963 0.98939 0.95047 1.21870 0.96868 0.96604 1.01399 1.20474 0.91381 0.90616 0.91264 0.92239 1.42729 1.05204 1.08898 1.81675 1.19105 0.81261 0.98462 1.38686 0.89023 1.24677 0.95360 0.97479 1.01461 1.69703 1.07881 1.26902 1.53402 0.86566 0.79873 0.84242 0.77926 1.21089 1.21775 1.20313 1.22673 0.97782 0.84561 0.98023 1.20399 0.92833 0.88276 0.94358 1.20519 0.99094 1.00405 0.94553 1.23237 1.02187 0.89524 1.04604 1.23220 0.89684 1.01510 1.03975 0.92000 0.90887 0.90626 0.88070 0.91882 0.90625 0.90927 0.79473 0.91896 0.89738 0.91386 0.91033 0.91423 0.92238 0.80524 0.93050 0.92260 0.88533 0.86795 0.87147 0.88349 0.88498 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.45 37.16 0.35 -0.62 16 2 C 0.15 1.11 3.63 -67.93 -0.25 0.87 16 3 C -0.16 -1.05 9.44 37.16 0.35 -0.70 16 4 N -0.35 -3.79 3.25 -50.17 -0.16 -3.95 16 5 N -0.29 -3.51 12.33 30.86 0.38 -3.13 16 6 C 0.08 0.96 9.83 -16.98 -0.17 0.79 16 7 C -0.28 -3.84 4.98 -105.07 -0.52 -4.36 16 8 C 0.59 9.51 4.99 -12.52 -0.06 9.44 16 9 O -0.53 -10.32 12.73 5.27 0.07 -10.25 16 10 N -0.60 -9.06 2.97 -174.03 -0.52 -9.58 16 11 C 0.11 1.24 6.25 -3.71 -0.02 1.21 16 12 C -0.13 -1.48 6.08 -26.61 -0.16 -1.65 16 13 C -0.13 -1.90 5.36 -26.66 -0.14 -2.04 16 14 C 0.17 3.29 2.92 -67.77 -0.20 3.09 16 15 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 16 N -0.74 -17.32 4.93 -53.27 -0.26 -17.59 16 17 C -0.25 -6.93 10.41 -15.07 -0.16 -7.09 16 18 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 20 N -0.93 -29.50 13.97 55.49 0.78 -28.73 16 21 Si 0.88 22.00 27.73 -169.99 -4.71 17.29 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 25 C 0.09 1.70 6.02 -3.71 -0.02 1.68 16 26 C 0.17 2.08 6.66 -81.60 -0.54 1.54 16 27 C -0.13 -1.32 5.86 -91.77 -0.54 -1.86 16 28 C -0.16 -1.91 9.50 -26.73 -0.25 -2.16 16 29 C -0.15 -1.71 9.63 -26.73 -0.26 -1.97 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.10 0.58 6.59 -51.93 -0.34 0.23 16 34 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.19 1.84 7.88 -52.49 -0.41 1.43 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.89 4.55 -51.93 -0.24 0.65 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.36 8.22 5.66 -40.82 -0.23 7.98 16 45 H 0.26 7.81 8.31 -40.82 -0.34 7.48 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.10 2.09 6.99 -51.93 -0.36 1.72 16 48 H 0.11 0.88 7.03 -51.93 -0.36 0.52 16 49 H 0.11 1.66 4.58 -51.93 -0.24 1.42 16 50 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 51 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.12 1.77 6.42 -51.93 -0.33 1.43 16 LS Contribution 403.31 15.07 6.08 6.08 Total: -1.00 -34.08 403.31 -9.50 -43.58 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.45 Total: 10.01 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.69 Total: -3.74 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 0.21 Total: -62.97 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.08 -9.50 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000653293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.896 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds