Wall clock time and date at job start Wed Apr 1 2020 04:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47003 * 2 1 4 4 N 1.46502 * 109.46779 * 119.99903 * 2 1 3 5 5 N 1.39940 * 125.75250 * 299.97430 * 4 2 1 6 6 C 1.30452 * 108.89419 * 179.77288 * 5 4 2 7 7 C 1.41280 * 108.02147 * 0.38653 * 6 5 4 8 8 C 1.47435 * 126.41281 * 179.87998 * 7 6 5 9 9 O 1.21607 * 119.99914 * 237.37222 * 8 7 6 10 10 N 1.34774 * 120.00110 * 57.36888 * 8 7 6 11 11 C 1.46920 * 120.63252 * 355.32800 * 10 8 7 12 12 C 1.53190 * 108.77826 * 233.58867 * 11 10 8 13 13 C 1.53036 * 109.33858 * 305.34561 * 12 11 10 14 14 C 1.53110 * 109.50393 * 61.34844 * 13 12 11 15 15 H 1.08997 * 109.48700 * 58.61239 * 14 13 12 16 16 N 1.46497 * 109.51909 * 178.68544 * 14 13 12 17 17 C 1.36931 * 120.00440 * 204.87185 * 16 14 13 18 18 H 1.08007 * 119.99539 * 359.97438 * 17 16 14 19 19 C 1.38804 * 120.00398 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00421 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00089 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47079 * 90.00103 * 21 19 17 23 23 H 1.48496 * 109.47313 * 210.00331 * 21 19 17 24 24 H 1.48508 * 109.47161 * 330.00156 * 21 19 17 25 25 C 1.46928 * 120.62948 * 175.30477 * 10 8 7 26 26 C 1.34259 * 125.75813 * 120.00031 * 4 2 1 27 27 C 1.50705 * 126.28542 * 359.96016 * 26 4 2 28 28 C 1.53003 * 117.49489 * 196.00104 * 27 26 4 29 29 C 1.52998 * 59.99898 * 252.51053 * 28 27 26 30 30 H 1.08999 * 109.47095 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47824 * 300.00329 * 1 2 3 32 32 H 1.09011 * 109.46717 * 60.00664 * 1 2 3 33 33 H 1.08998 * 109.47111 * 239.99467 * 2 1 3 34 34 H 1.09010 * 109.46829 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47229 * 299.99327 * 3 2 1 36 36 H 1.09000 * 109.47273 * 60.00173 * 3 2 1 37 37 H 1.07997 * 125.98549 * 180.26387 * 6 5 4 38 38 H 1.09004 * 109.58953 * 113.79445 * 11 10 8 39 39 H 1.09004 * 109.70547 * 353.44203 * 11 10 8 40 40 H 1.08999 * 109.50090 * 65.31307 * 12 11 10 41 41 H 1.09000 * 109.49767 * 185.37963 * 12 11 10 42 42 H 1.08995 * 109.46273 * 181.40105 * 13 12 11 43 43 H 1.09004 * 109.46014 * 301.36557 * 13 12 11 44 44 H 0.97008 * 119.99655 * 24.87032 * 16 14 13 45 45 H 0.96995 * 120.00614 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.58820 * 246.20059 * 25 10 8 47 47 H 1.09000 * 109.58879 * 6.63135 * 25 10 8 48 48 H 1.08998 * 115.54868 * 341.70005 * 27 26 4 49 49 H 1.09007 * 117.49631 * 359.97438 * 28 27 26 50 50 H 1.08998 * 117.49760 * 145.01970 * 28 27 26 51 51 H 1.09002 * 117.50040 * 252.51234 * 29 28 27 52 52 H 1.08997 * 117.50311 * 107.48864 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 7 1.7558 -0.3186 2.5195 6 6 2.3461 -1.1623 3.3205 7 6 3.0257 -2.1146 2.5285 8 6 3.8276 -3.2498 3.0204 9 8 4.9934 -3.3581 2.6920 10 7 3.2685 -4.1674 3.8339 11 6 1.8932 -3.9966 4.3215 12 6 1.8954 -4.1000 5.8500 13 6 2.5505 -5.4184 6.2678 14 6 4.0012 -5.4459 5.7789 15 1 4.5428 -4.5989 6.1998 16 7 4.6380 -6.6943 6.2058 17 6 5.9981 -6.7539 6.3529 18 1 6.6014 -5.8804 6.1538 19 6 6.6013 -7.9366 6.7578 20 7 7.9086 -7.9936 6.8996 21 14 5.5577 -9.4469 7.1028 22 1 5.4081 -10.2404 5.8565 23 1 6.2172 -10.2774 8.1422 24 1 4.2180 -9.0236 7.5839 25 6 4.0228 -5.3578 4.2496 26 6 2.7933 -1.7868 1.2078 27 6 3.3136 -2.5241 0.0008 28 6 3.8557 -3.9385 0.2165 29 6 4.8193 -2.7857 -0.0723 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8902 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.3214 -1.1360 4.3999 38 1 1.2576 -4.7773 3.9034 39 1 1.5157 -3.0188 4.0221 40 1 2.4569 -3.2656 6.2702 41 1 0.8699 -4.0706 6.2181 42 1 2.5308 -5.5055 7.3541 43 1 2.0031 -6.2516 5.8269 44 1 4.0960 -7.4789 6.3842 45 1 8.3302 -8.8202 7.1822 46 1 3.5609 -6.2495 3.8257 47 1 5.0530 -5.2772 3.9028 48 1 2.7918 -2.3219 -0.9345 49 1 3.8364 -4.3356 1.2315 50 1 3.6905 -4.6672 -0.5771 51 1 5.2881 -2.7560 -1.0559 52 1 5.4335 -2.4245 0.7525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000653293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:56 Heat of formation + Delta-G solvation = 65.309415 kcal Electronic energy + Delta-G solvation = -31819.125856 eV Core-core repulsion = 27820.829767 eV Total energy + Delta-G solvation = -3998.296089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.75687 -40.81352 -38.86100 -37.76030 -36.63917 -36.20872 -33.95582 -32.88536 -31.77461 -31.29346 -29.98577 -28.20846 -26.69543 -25.67547 -24.75157 -24.05730 -23.39197 -23.06562 -22.64882 -21.49087 -20.34740 -19.76700 -19.48691 -18.46412 -17.82450 -17.03268 -16.65821 -16.23531 -16.12473 -15.99424 -15.63499 -15.47331 -15.35703 -15.29750 -14.97991 -14.70322 -14.62467 -14.19742 -14.04645 -13.83807 -13.81494 -13.30312 -13.18323 -13.09925 -12.95471 -12.66441 -12.59812 -12.50754 -12.35396 -12.33993 -12.07615 -11.98563 -11.90393 -11.83571 -11.75762 -11.70438 -11.37972 -11.34916 -11.11965 -10.79882 -10.21059 -9.79668 -9.52367 -9.18970 -8.02646 -5.38640 0.54003 1.24036 1.31874 1.37688 1.43134 1.50226 1.87221 2.17609 2.48613 2.91215 3.27898 3.30873 3.36798 3.54645 3.73196 3.81385 3.87181 3.92232 3.96865 4.02383 4.06099 4.08521 4.13103 4.16002 4.32777 4.38875 4.47208 4.57641 4.63461 4.68027 4.70536 4.73924 4.76056 4.80942 4.86548 4.88715 4.94882 4.95459 5.05548 5.13191 5.14495 5.18510 5.23141 5.28060 5.38028 5.44133 5.45971 5.58805 5.77475 5.92622 6.21054 6.50690 6.56843 7.06287 7.26060 7.79331 8.01599 9.19230 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018827 B = 0.002762 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.869362 B =10134.015990 C =10908.002428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 C -0.157 4.157 4 N -0.345 5.345 5 N -0.300 5.300 6 C 0.078 3.922 7 C -0.305 4.305 8 C 0.593 3.407 9 O -0.579 6.579 10 N -0.599 5.599 11 C 0.104 3.896 12 C -0.121 4.121 13 C -0.120 4.120 14 C 0.170 3.830 15 H 0.029 0.971 16 N -0.743 5.743 17 C -0.234 4.234 18 H 0.044 0.956 19 C -0.066 4.066 20 N -0.986 5.986 21 Si 0.962 3.038 22 H -0.277 1.277 23 H -0.296 1.296 24 H -0.244 1.244 25 C 0.109 3.891 26 C 0.168 3.832 27 C -0.106 4.106 28 C -0.170 4.170 29 C -0.153 4.153 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.049 0.951 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.205 0.795 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.370 0.630 45 H 0.258 0.742 46 H 0.068 0.932 47 H 0.047 0.953 48 H 0.153 0.847 49 H 0.076 0.924 50 H 0.121 0.879 51 H 0.124 0.876 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.531 16.703 -17.367 33.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 C -0.214 4.214 4 N -0.125 5.125 5 N -0.120 5.120 6 C -0.108 4.108 7 C -0.320 4.320 8 C 0.382 3.618 9 O -0.460 6.460 10 N -0.331 5.331 11 C -0.018 4.018 12 C -0.160 4.160 13 C -0.158 4.158 14 C 0.061 3.939 15 H 0.048 0.952 16 N -0.387 5.387 17 C -0.365 4.365 18 H 0.062 0.938 19 C -0.257 4.257 20 N -0.636 5.636 21 Si 0.789 3.211 22 H -0.204 1.204 23 H -0.223 1.223 24 H -0.168 1.168 25 C -0.016 4.016 26 C 0.036 3.964 27 C -0.126 4.126 28 C -0.208 4.208 29 C -0.191 4.191 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.221 0.779 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.130 0.870 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.204 0.796 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.066 0.934 48 H 0.171 0.829 49 H 0.095 0.905 50 H 0.139 0.861 51 H 0.142 0.858 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.547 17.889 -17.698 34.463 hybrid contribution 1.217 -1.861 0.803 2.365 sum -22.329 16.027 -16.895 32.263 Atomic orbital electron populations 1.22104 0.91813 1.03031 1.04245 1.21854 0.96709 0.94389 0.82919 1.22114 1.01151 0.93913 1.04248 1.48819 1.37410 1.19979 1.06275 1.77058 1.24747 1.23258 0.86919 1.24139 0.94386 0.91544 1.00766 1.19811 1.14639 1.04227 0.93315 1.17652 0.85589 0.81210 0.77349 1.90768 1.18334 1.77145 1.59715 1.48121 1.15708 1.21709 1.47546 1.22049 0.81039 1.03960 0.94745 1.21876 1.02773 0.96703 0.94615 1.21796 0.93320 0.99272 1.01449 1.20641 0.93984 0.87740 0.91548 0.95240 1.42643 1.03304 1.10752 1.81971 1.18946 0.83371 0.96873 1.37342 0.93775 1.25607 0.96766 1.01366 1.01955 1.69915 1.10387 1.27913 1.55371 0.85309 0.79157 0.78981 0.77691 1.20355 1.22285 1.16790 1.22149 0.95842 0.86405 0.97203 1.20643 0.92654 0.88695 0.94408 1.20688 0.98069 0.98515 0.95312 1.23185 1.03390 0.90728 1.03485 1.23136 0.90317 1.01710 1.03929 0.92374 0.92309 0.87840 0.85785 0.93178 0.87661 0.92399 0.77888 0.90152 0.88069 0.91815 0.87020 0.91289 0.90563 0.79583 0.93289 0.91389 0.93415 0.82919 0.90521 0.86082 0.85761 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.45 71.98 0.68 -0.68 16 2 C 0.14 1.61 3.63 44.99 0.16 1.78 16 3 C -0.16 -1.66 9.44 71.98 0.68 -0.98 16 4 N -0.34 -6.71 3.25 -312.63 -1.02 -7.73 16 5 N -0.30 -6.76 12.33 -56.28 -0.69 -7.45 16 6 C 0.08 1.80 9.83 85.65 0.84 2.65 16 7 C -0.30 -8.27 4.98 -20.15 -0.10 -8.37 16 8 C 0.59 19.94 4.99 86.67 0.43 20.37 16 9 O -0.58 -24.50 12.73 -4.05 -0.05 -24.55 16 10 N -0.60 -18.39 2.97 -822.76 -2.45 -20.83 16 11 C 0.10 2.20 6.25 86.36 0.54 2.74 16 12 C -0.12 -2.43 6.08 30.67 0.19 -2.24 16 13 C -0.12 -3.28 5.36 30.64 0.16 -3.11 16 14 C 0.17 6.63 2.92 45.10 0.13 6.76 16 15 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 16 N -0.74 -35.19 4.93 -322.46 -1.59 -36.78 16 17 C -0.23 -13.92 10.41 84.03 0.87 -13.04 16 18 H 0.04 2.98 8.06 -2.91 -0.02 2.95 16 19 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 20 N -0.99 -65.35 13.97 21.65 0.30 -65.05 16 21 Si 0.96 45.83 27.73 68.60 1.90 47.73 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 24 H -0.24 -10.18 6.52 99.48 0.65 -9.53 16 25 C 0.11 4.16 6.02 86.36 0.52 4.68 16 26 C 0.17 3.88 6.66 42.14 0.28 4.16 16 27 C -0.11 -2.05 5.86 -11.54 -0.07 -2.11 16 28 C -0.17 -4.07 9.50 30.59 0.29 -3.78 16 29 C -0.15 -3.59 9.63 30.59 0.29 -3.30 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.12 0.87 6.59 -2.39 -0.02 0.86 16 34 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.20 3.75 7.88 -2.91 -0.02 3.73 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.10 1.88 4.55 -2.38 -0.01 1.87 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.37 16.26 5.66 -92.70 -0.52 15.74 16 45 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.05 2.27 6.99 -2.39 -0.02 2.25 16 48 H 0.15 1.73 7.03 -2.39 -0.02 1.71 16 49 H 0.08 2.41 4.58 -2.38 -0.01 2.40 16 50 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 52 H 0.08 2.59 6.42 -2.39 -0.02 2.58 16 Total: -1.00 -81.98 403.31 3.13 -78.85 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.34 Total: 33.82 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.38 Total: 2.00 kcal Atomic # 7 Polarization: -132.40 SS G_CDS: -5.44 Total: -137.84 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.05 Total: -24.55 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.90 Total: 47.73 kcal Total: -81.98 3.13 -78.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000653293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.155 kcal (2) G-P(sol) polarization free energy of solvation -81.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds