Wall clock time and date at job start Wed Apr 1 2020 04:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46720 * 2 1 4 4 H 1.09003 * 109.47181 * 304.99788 * 3 2 1 5 5 C 1.52995 * 109.47047 * 65.00098 * 3 2 1 6 6 N 1.46507 * 109.46712 * 185.00195 * 3 2 1 7 7 N 1.28458 * 124.88164 * 300.02054 * 6 3 2 8 8 C 1.31818 * 110.07297 * 179.97438 * 7 6 3 9 9 C 1.47706 * 126.51910 * 180.02562 * 8 7 6 10 10 O 1.21576 * 119.99770 * 179.97438 * 9 8 7 11 11 N 1.34778 * 120.00147 * 359.95344 * 9 8 7 12 12 C 1.46498 * 119.99862 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47117 * 180.02562 * 12 11 9 14 14 C 1.29455 * 117.69639 * 94.99556 * 13 12 11 15 15 C 1.50320 * 123.64947 * 180.85822 * 14 13 12 16 16 N 1.47011 * 109.16817 * 349.02387 * 15 14 13 17 17 C 1.36929 * 121.37371 * 222.96568 * 16 15 14 18 18 H 1.08001 * 119.99879 * 155.97205 * 17 16 15 19 19 C 1.38813 * 120.00295 * 335.97251 * 17 16 15 20 20 N 1.31614 * 119.99789 * 344.51394 * 19 17 16 21 21 Si 1.86796 * 120.00071 * 164.51141 * 19 17 16 22 22 H 1.48505 * 109.47215 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47337 * 119.99885 * 21 19 17 24 24 H 1.48503 * 109.47400 * 240.00318 * 21 19 17 25 25 C 1.47340 * 117.24660 * 42.94789 * 16 15 14 26 26 C 1.49973 * 117.69219 * 274.73757 * 13 12 11 27 27 C 1.41504 * 106.96103 * 359.97438 * 8 7 6 28 28 C 1.35029 * 124.88281 * 120.00499 * 6 3 2 29 29 C 1.50699 * 126.38772 * 0.04738 * 28 6 3 30 30 H 1.09001 * 109.47066 * 60.00448 * 1 2 3 31 31 H 1.08999 * 109.46534 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46893 * 299.99893 * 1 2 3 33 33 H 1.08998 * 109.46893 * 240.00107 * 2 1 3 34 34 H 1.09001 * 109.47066 * 119.99552 * 2 1 3 35 35 H 1.08994 * 109.47123 * 60.00343 * 5 3 2 36 36 H 1.09003 * 109.46803 * 179.97438 * 5 3 2 37 37 H 1.08999 * 109.47587 * 299.99566 * 5 3 2 38 38 H 0.97003 * 119.99936 * 359.97438 * 11 9 8 39 39 H 1.09006 * 109.47232 * 299.99404 * 12 11 9 40 40 H 1.08994 * 109.47631 * 59.99805 * 12 11 9 41 41 H 1.08000 * 118.17217 * 0.88210 * 14 13 12 42 42 H 1.09001 * 109.52097 * 108.93219 * 15 14 13 43 43 H 1.08991 * 109.52257 * 229.11524 * 15 14 13 44 44 H 0.97008 * 119.99736 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.78173 * 57.81132 * 25 16 15 46 46 H 1.09001 * 109.77285 * 178.61717 * 25 16 15 47 47 H 1.08996 * 109.31271 * 281.28838 * 26 13 12 48 48 H 1.09001 * 109.31302 * 40.71581 * 26 13 12 49 49 H 1.07993 * 127.24750 * 179.73393 * 27 8 7 50 50 H 1.08998 * 109.47214 * 269.98541 * 29 28 6 51 51 H 1.09000 * 109.47472 * 29.98646 * 29 28 6 52 52 H 1.09005 * 109.47436 * 149.99094 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1265 1.3073 6 7 3.5001 1.4443 -0.1204 7 7 4.3066 0.8917 0.7128 8 6 5.5529 1.0697 0.3220 9 6 6.7673 0.5857 1.0095 10 8 7.8647 0.8185 0.5409 11 7 6.6588 -0.1137 2.1565 12 6 7.8634 -0.5933 2.8387 13 6 7.4699 -1.3411 4.0865 14 6 7.3607 -2.6286 4.0072 15 6 6.9588 -3.5032 5.1618 16 7 6.9794 -2.7091 6.3988 17 6 7.5061 -3.2104 7.5591 18 1 7.8690 -2.5379 8.3222 19 6 7.5736 -4.5831 7.7545 20 7 6.8722 -5.3920 6.9891 21 14 8.6599 -5.2821 9.1038 22 1 9.3388 -4.1711 9.8181 23 1 7.8258 -6.0499 10.0629 24 1 9.6784 -6.1808 8.5036 25 6 6.4102 -1.3514 6.3384 26 6 7.2384 -0.5418 5.3342 27 6 5.5060 1.8117 -0.8820 28 6 4.1915 2.0268 -1.1234 29 6 3.6086 2.7764 -2.2936 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0699 1.5876 2.1491 36 1 1.9989 3.1541 1.3075 37 1 0.5489 2.1253 1.3969 38 1 5.7833 -0.2989 2.5308 39 1 8.4158 -1.2591 2.1755 40 1 8.4918 0.2560 3.1066 41 1 7.5703 -3.1006 3.0586 42 1 5.9535 -3.8894 4.9936 43 1 7.6590 -4.3338 5.2505 44 1 6.9197 -6.3513 7.1254 45 1 5.3718 -1.4010 6.0109 46 1 6.4657 -0.8842 7.3217 47 1 8.1988 -0.2823 5.7795 48 1 6.7021 0.3730 5.0820 49 1 6.3429 2.1417 -1.4794 50 1 3.4242 2.0828 -3.1139 51 1 2.6701 3.2434 -1.9948 52 1 4.3098 3.5451 -2.6185 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000871672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:34 Heat of formation + Delta-G solvation = 47.217241 kcal Electronic energy + Delta-G solvation = -30265.403796 eV Core-core repulsion = 26266.323171 eV Total energy + Delta-G solvation = -3999.080625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.75648 -40.65391 -39.31386 -37.43488 -36.44340 -34.61805 -33.71071 -32.82737 -32.44126 -31.44402 -30.07613 -28.76150 -27.86436 -26.60707 -25.57959 -24.52434 -24.09012 -22.78317 -22.10505 -21.76963 -20.38108 -19.49407 -18.46367 -17.79657 -17.30697 -17.12951 -17.03221 -16.85233 -16.12343 -16.09718 -15.76945 -15.41477 -15.24123 -15.06115 -14.92176 -14.64785 -14.41891 -14.04112 -13.97454 -13.87080 -13.66958 -13.54508 -13.29244 -13.26573 -13.08982 -12.95380 -12.82252 -12.74438 -12.62341 -12.54848 -12.22123 -12.11057 -12.00571 -11.83434 -11.72439 -11.63599 -11.42529 -11.23587 -10.70628 -10.30845 -9.97228 -9.87724 -9.69085 -8.76906 -7.89235 -5.30767 0.51972 1.11861 1.12852 1.45944 1.47900 1.48825 1.58220 2.35119 2.37836 2.50489 3.25253 3.27883 3.59343 3.67171 3.71409 3.76110 3.83943 3.94494 3.99184 4.05262 4.34890 4.40201 4.41091 4.46373 4.50929 4.58927 4.62295 4.64432 4.70805 4.74806 4.78095 4.81873 4.87752 4.88939 5.02271 5.04847 5.07540 5.09193 5.10185 5.18743 5.25938 5.28650 5.36343 5.38828 5.43150 5.45361 5.60572 5.73786 5.92410 6.13478 6.32740 6.41649 6.91667 7.12090 7.12827 7.81661 8.36288 9.19684 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014420 B = 0.002236 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.306166 B =12521.197418 C =13735.843711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.138 3.862 4 H 0.143 0.857 5 C -0.162 4.162 6 N -0.268 5.268 7 N -0.268 5.268 8 C -0.045 4.045 9 C 0.601 3.399 10 O -0.574 6.574 11 N -0.701 5.701 12 C 0.166 3.834 13 C -0.140 4.140 14 C -0.141 4.141 15 C 0.206 3.794 16 N -0.615 5.615 17 C -0.255 4.255 18 H 0.071 0.929 19 C -0.055 4.055 20 N -0.940 5.940 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.140 3.860 26 C -0.084 4.084 27 C -0.204 4.204 28 C 0.020 3.980 29 C -0.083 4.083 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.411 0.589 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.013 0.987 43 H 0.059 0.941 44 H 0.250 0.750 45 H 0.025 0.975 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.161 0.839 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 18.661 -20.324 31.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.040 3.960 4 H 0.160 0.840 5 C -0.220 4.220 6 N -0.058 5.058 7 N -0.104 5.104 8 C -0.203 4.203 9 C 0.387 3.613 10 O -0.452 6.452 11 N -0.352 5.352 12 C 0.043 3.957 13 C -0.140 4.140 14 C -0.162 4.162 15 C 0.081 3.919 16 N -0.338 5.338 17 C -0.385 4.385 18 H 0.089 0.911 19 C -0.250 4.250 20 N -0.587 5.587 21 Si 0.797 3.203 22 H -0.191 1.191 23 H -0.219 1.219 24 H -0.218 1.218 25 C 0.015 3.985 26 C -0.122 4.122 27 C -0.232 4.232 28 C -0.105 4.105 29 C -0.141 4.141 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.247 0.753 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.031 0.969 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.043 0.957 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.179 0.821 50 H 0.111 0.889 51 H 0.111 0.889 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.780 18.184 -19.733 30.635 hybrid contribution 0.957 -0.910 0.498 1.412 sum -13.823 17.273 -19.236 29.317 Atomic orbital electron populations 1.21783 0.92098 1.03035 1.03511 1.21835 0.98453 0.94033 1.02557 1.22121 0.71781 0.99447 1.02675 0.83992 1.22198 1.04144 1.00386 0.95238 1.46082 1.08104 1.36321 1.15309 1.73421 1.00162 1.18083 1.18770 1.21750 0.91003 1.08027 0.99522 1.17206 0.86767 0.77258 0.80077 1.90744 1.27873 1.59594 1.67010 1.45923 1.10868 1.54531 1.23844 1.20333 0.86604 0.97941 0.90774 1.20598 1.03892 0.94294 0.95243 1.22971 0.97955 0.95782 0.99471 1.19390 0.97423 0.92212 0.82842 1.44413 1.69684 1.13154 1.06598 1.19553 1.32207 0.90611 0.96158 0.91102 1.25760 1.00904 0.97126 1.01226 1.70180 1.42625 1.02600 1.43283 0.85175 0.78273 0.78150 0.78677 1.19103 1.21857 1.21824 1.21159 0.94374 0.85244 0.97766 1.20719 1.00724 0.97500 0.93277 1.21682 0.97233 1.05823 0.98431 1.21991 0.91178 1.02076 0.95227 1.20549 1.02237 0.99491 0.91799 0.90475 0.92145 0.91161 0.92001 0.92468 0.92916 0.91888 0.87450 0.75288 0.91584 0.90803 0.87078 0.96889 0.92302 0.94114 0.95652 0.92049 0.91447 0.89893 0.82102 0.88894 0.88933 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 71.98 0.70 -0.32 16 2 C -0.13 -1.57 5.58 30.60 0.17 -1.40 16 3 C 0.14 1.49 3.02 44.99 0.14 1.63 16 4 H 0.14 0.55 6.55 -2.39 -0.02 0.54 16 5 C -0.16 -1.70 9.12 71.98 0.66 -1.04 16 6 N -0.27 -4.92 3.04 -314.18 -0.96 -5.87 16 7 N -0.27 -6.76 11.33 -48.17 -0.55 -7.30 16 8 C -0.04 -1.27 7.13 42.45 0.30 -0.96 16 9 C 0.60 19.56 7.82 86.75 0.68 20.24 16 10 O -0.57 -21.83 16.93 -3.96 -0.07 -21.89 16 11 N -0.70 -21.20 5.55 -469.83 -2.61 -23.81 16 12 C 0.17 5.22 5.66 85.63 0.48 5.70 16 13 C -0.14 -4.89 5.22 -15.14 -0.08 -4.97 16 14 C -0.14 -5.61 9.47 27.10 0.26 -5.35 16 15 C 0.21 10.29 5.23 85.42 0.45 10.74 16 16 N -0.61 -31.52 3.01 -703.05 -2.11 -33.63 16 17 C -0.26 -14.25 9.71 84.03 0.82 -13.44 16 18 H 0.07 3.84 7.88 -2.91 -0.02 3.81 16 19 C -0.06 -3.14 5.01 84.86 0.43 -2.72 16 20 N -0.94 -56.20 11.08 21.65 0.24 -55.96 16 21 Si 0.97 45.62 29.58 68.60 2.03 47.64 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 C 0.14 5.81 6.59 86.31 0.57 6.38 16 26 C -0.08 -2.88 5.95 29.72 0.18 -2.71 16 27 C -0.20 -4.78 10.73 22.41 0.24 -4.54 16 28 C 0.02 0.33 6.92 41.40 0.29 0.62 16 29 C -0.08 -0.54 9.92 71.24 0.71 0.17 16 30 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.40 6.56 -2.39 -0.02 0.38 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.11 0.57 6.57 -2.39 -0.02 0.55 16 38 H 0.41 11.89 8.19 -92.71 -0.76 11.13 16 39 H 0.07 2.13 7.78 -2.38 -0.02 2.11 16 40 H 0.07 2.28 8.11 -2.39 -0.02 2.26 16 41 H 0.11 4.00 7.73 -2.91 -0.02 3.97 16 42 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 3.30 6.41 -2.39 -0.02 3.28 16 44 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.06 2.46 7.96 -2.39 -0.02 2.44 16 47 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 50 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 51 H 0.09 0.19 7.03 -2.39 -0.02 0.17 16 52 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -74.00 419.40 3.10 -70.89 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.15 Total: 21.90 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 6.97 Total: 8.03 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -5.98 Total: -126.57 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.07 Total: -21.89 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -74.00 3.10 -70.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000871672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.108 kcal (2) G-P(sol) polarization free energy of solvation -73.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds