Wall clock time and date at job start Wed Apr 1 2020 04:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47565 * 2 1 4 4 N 1.46504 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.39930 * 125.75355 * 89.97490 * 4 3 2 6 6 C 1.30450 * 108.89685 * 180.02562 * 5 4 3 7 7 C 1.50700 * 125.98952 * 180.02562 * 6 5 4 8 8 C 1.41292 * 108.02286 * 359.97438 * 6 5 4 9 9 C 1.47421 * 126.41718 * 179.97438 * 8 6 5 10 10 O 1.21610 * 120.00358 * 90.02368 * 9 8 6 11 11 N 1.34778 * 120.00118 * 270.02484 * 9 8 6 12 12 C 1.46503 * 120.00102 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47021 * 179.97438 * 12 11 9 14 14 C 1.29454 * 117.69519 * 94.99989 * 13 12 11 15 15 C 1.50322 * 123.65500 * 180.86104 * 14 13 12 16 16 N 1.47012 * 109.16271 * 349.01804 * 15 14 13 17 17 C 1.36934 * 121.37462 * 222.96812 * 16 15 14 18 18 H 1.08005 * 120.00007 * 155.96961 * 17 16 15 19 19 C 1.38818 * 120.00320 * 335.97331 * 17 16 15 20 20 N 1.31616 * 119.99424 * 344.52132 * 19 17 16 21 21 Si 1.86793 * 120.00033 * 164.52092 * 19 17 16 22 22 H 1.48499 * 109.47295 * 59.99993 * 21 19 17 23 23 H 1.48498 * 109.47025 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47357 * 299.99725 * 21 19 17 25 25 C 1.47333 * 117.24883 * 42.94994 * 16 15 14 26 26 C 1.49972 * 117.69466 * 274.74033 * 13 12 11 27 27 C 1.34259 * 125.75112 * 270.26528 * 4 3 2 28 28 C 1.50698 * 126.29107 * 359.97438 * 27 4 3 29 29 H 1.08997 * 109.47090 * 300.00984 * 1 2 3 30 30 H 1.09007 * 109.46556 * 60.00296 * 1 2 3 31 31 H 1.08992 * 109.47346 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47350 * 239.99498 * 2 1 3 33 33 H 1.09007 * 109.46556 * 119.99704 * 2 1 3 34 34 H 1.08998 * 109.47196 * 59.99404 * 3 2 1 35 35 H 1.09007 * 109.46942 * 299.99468 * 3 2 1 36 36 H 1.09003 * 109.47157 * 269.95513 * 7 6 5 37 37 H 1.08999 * 109.47221 * 29.95991 * 7 6 5 38 38 H 1.09000 * 109.46657 * 149.95559 * 7 6 5 39 39 H 0.96997 * 120.00055 * 359.97438 * 11 9 8 40 40 H 1.08996 * 109.47132 * 59.99990 * 12 11 9 41 41 H 1.09001 * 109.46799 * 299.99571 * 12 11 9 42 42 H 1.07997 * 118.17426 * 0.87895 * 14 13 12 43 43 H 1.08999 * 109.52720 * 108.92650 * 15 14 13 44 44 H 1.08998 * 109.52220 * 229.11921 * 15 14 13 45 45 H 0.97005 * 119.99607 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.77712 * 57.81016 * 25 16 15 47 47 H 1.08993 * 109.77988 * 178.61344 * 25 16 15 48 48 H 1.09000 * 109.31400 * 281.28746 * 26 13 12 49 49 H 1.08991 * 109.31850 * 40.71826 * 26 13 12 50 50 H 1.09004 * 109.46801 * 270.19893 * 28 27 4 51 51 H 1.08997 * 109.47464 * 30.20317 * 28 27 4 52 52 H 1.08998 * 109.47146 * 150.21294 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3232 1.4417 -1.1346 6 6 5.5715 1.4413 -0.7558 7 6 6.7730 1.4411 -1.6655 8 6 5.5996 1.4424 0.6568 9 6 6.8032 1.4418 1.5082 10 8 7.3004 2.4948 1.8589 11 7 7.3525 0.2744 1.8979 12 6 8.5489 0.2739 2.7434 13 6 8.9575 -1.1471 3.0347 14 6 9.8566 -1.6828 2.2729 15 6 10.3488 -3.0943 2.4307 16 7 9.8558 -3.6377 3.7047 17 6 10.6667 -4.3727 4.5277 18 1 10.4509 -4.4339 5.5842 19 6 11.7661 -5.0391 4.0041 20 7 11.8660 -5.2243 2.7049 21 14 13.1037 -5.6730 5.1435 22 1 12.5182 -6.6446 6.1019 23 1 14.1594 -6.3434 4.3427 24 1 13.6966 -4.5356 5.8919 25 6 8.4534 -3.3583 4.0596 26 6 8.2981 -1.8390 4.1904 27 6 4.2891 1.4375 1.0905 28 6 3.8238 1.4316 2.5239 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9563 -0.8901 36 1 7.0629 0.4133 -1.8843 37 1 6.5254 1.9544 -2.5946 38 1 7.5997 1.9554 -1.1754 39 1 6.9558 -0.5655 1.6184 40 1 8.3323 0.7884 3.6796 41 1 9.3597 0.7867 2.2260 42 1 10.2768 -1.0820 1.4799 43 1 9.9776 -3.7038 1.6068 44 1 11.4387 -3.1024 2.4288 45 1 12.6344 -5.6897 2.3390 46 1 7.7932 -3.7344 3.2780 47 1 8.2111 -3.8355 5.0091 48 1 8.7577 -1.5048 5.1206 49 1 7.2379 -1.5866 4.2045 50 1 3.7087 2.4579 2.8727 51 1 2.8667 0.9147 2.5932 52 1 4.5598 0.9182 3.1426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001353665.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:48 Heat of formation + Delta-G solvation = 60.258764 kcal Electronic energy + Delta-G solvation = -30349.108006 eV Core-core repulsion = 26350.592904 eV Total energy + Delta-G solvation = -3998.515102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.68435 -39.23344 -37.67749 -35.98929 -34.84129 -33.30907 -32.87916 -31.90080 -30.81119 -29.72575 -29.17831 -27.99666 -26.70187 -25.78893 -24.18712 -22.80461 -22.47663 -21.75801 -21.02586 -19.90633 -19.65297 -17.86527 -17.50029 -16.49612 -16.12790 -15.71844 -15.48824 -15.42076 -15.07854 -14.79038 -14.15494 -14.10553 -13.93382 -13.76211 -13.65273 -13.55842 -13.42340 -13.26003 -12.87113 -12.84499 -12.74663 -12.57439 -12.36482 -12.22562 -12.11788 -11.99281 -11.73884 -11.57326 -11.37519 -11.35004 -10.91614 -10.89392 -10.74002 -10.41380 -10.33783 -9.92095 -9.84128 -9.59509 -9.35609 -8.89512 -8.69309 -8.66847 -8.05317 -6.76036 -5.80965 -3.19830 1.48736 2.08035 2.30653 2.67612 2.69202 3.38280 3.44098 3.45390 3.70919 4.10719 4.21600 4.32392 4.48440 4.49099 4.60565 4.68578 4.88657 4.94678 5.05592 5.09426 5.12116 5.15581 5.24005 5.35631 5.39688 5.44913 5.47043 5.48748 5.51212 5.58205 5.60104 5.69917 5.74509 5.81651 5.84919 5.97354 6.07375 6.16406 6.32124 6.36280 6.48052 6.57946 6.67814 6.72257 6.85774 7.16729 7.25538 7.32790 7.46694 7.68134 7.72259 7.81866 8.35291 8.36815 9.18177 9.80927 10.38957 11.29447 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.002175 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.761395 B =12870.211871 C =13422.850337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.130 3.870 4 N -0.359 5.359 5 N -0.298 5.298 6 C 0.115 3.885 7 C -0.078 4.078 8 C -0.283 4.283 9 C 0.595 3.405 10 O -0.543 6.543 11 N -0.712 5.712 12 C 0.157 3.843 13 C -0.166 4.166 14 C -0.124 4.124 15 C 0.194 3.806 16 N -0.595 5.595 17 C -0.247 4.247 18 H 0.068 0.932 19 C -0.001 4.001 20 N -0.910 5.910 21 Si 0.905 3.095 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.144 3.856 26 C -0.089 4.089 27 C 0.127 3.873 28 C -0.098 4.098 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.402 0.598 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.041 0.959 44 H 0.093 0.907 45 H 0.255 0.745 46 H 0.023 0.977 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.086 0.914 51 H 0.076 0.924 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.058 13.028 -5.778 25.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.009 3.991 4 N -0.139 5.139 5 N -0.119 5.119 6 C -0.052 4.052 7 C -0.137 4.137 8 C -0.298 4.298 9 C 0.380 3.620 10 O -0.420 6.420 11 N -0.362 5.362 12 C 0.034 3.966 13 C -0.167 4.167 14 C -0.145 4.145 15 C 0.069 3.931 16 N -0.318 5.318 17 C -0.376 4.376 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.735 3.265 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.017 3.983 26 C -0.128 4.128 27 C -0.003 4.003 28 C -0.157 4.157 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.236 0.764 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.059 0.941 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.041 0.959 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.070 0.930 50 H 0.105 0.895 51 H 0.095 0.905 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.490 13.691 -6.590 26.319 hybrid contribution 1.038 -0.694 0.996 1.597 sum -20.452 12.997 -5.594 24.870 Atomic orbital electron populations 1.21696 0.94116 1.02704 1.02211 1.21953 0.96812 0.95565 1.03745 1.21854 0.73856 0.98750 1.04650 1.48287 1.06334 1.56162 1.03103 1.77100 1.01118 1.26485 1.07183 1.22304 0.93606 0.97197 0.92128 1.20270 0.92202 1.03543 0.97655 1.19882 0.92634 1.23454 0.93780 1.17322 0.82274 0.83671 0.78729 1.90771 1.63228 1.31590 1.56374 1.46240 1.29781 1.08328 1.51900 1.20474 0.86525 0.95534 0.94039 1.20487 1.01683 0.94421 1.00094 1.23281 0.95221 0.99552 0.96423 1.19760 0.99921 0.85573 0.87843 1.44118 1.06015 1.60230 1.21459 1.19135 1.05833 1.22855 0.89773 0.91424 1.24990 1.00606 0.98419 0.95895 1.69998 1.30154 1.44893 1.10438 0.86320 0.81719 0.78545 0.79897 1.20945 1.21634 1.21055 1.20983 0.87243 0.91712 0.98312 1.20777 0.97731 0.98243 0.96068 1.21311 0.89753 0.98285 0.90978 1.20566 1.02599 1.03982 0.88511 0.92288 0.92236 0.91772 0.90709 0.91142 0.88806 0.88440 0.89868 0.90457 0.90185 0.76369 0.91614 0.91608 0.88733 0.94129 0.88895 0.93541 0.95934 0.92527 0.91737 0.92987 0.89529 0.90503 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.14 -0.83 6.26 -26.73 -0.17 -1.00 16 3 C 0.13 0.84 6.03 -4.04 -0.02 0.82 16 4 N -0.36 -3.75 3.58 -56.60 -0.20 -3.95 16 5 N -0.30 -3.79 12.50 33.90 0.42 -3.37 16 6 C 0.11 1.47 7.26 -82.02 -0.60 0.88 16 7 C -0.08 -0.82 10.28 36.01 0.37 -0.45 16 8 C -0.28 -3.72 5.88 -105.07 -0.62 -4.34 16 9 C 0.60 8.73 6.97 -12.52 -0.09 8.64 16 10 O -0.54 -9.85 17.11 5.27 0.09 -9.76 16 11 N -0.71 -9.59 5.55 -62.56 -0.35 -9.94 16 12 C 0.16 2.33 5.66 -5.19 -0.03 2.30 16 13 C -0.17 -2.79 5.22 -100.99 -0.53 -3.31 16 14 C -0.12 -2.32 9.47 -35.78 -0.34 -2.65 16 15 C 0.19 4.51 5.23 -5.10 -0.03 4.48 16 16 N -0.60 -14.61 3.01 -173.56 -0.52 -15.13 16 17 C -0.25 -6.67 9.71 -15.06 -0.15 -6.81 16 18 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 19 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 20 N -0.91 -25.92 11.08 55.49 0.61 -25.31 16 21 Si 0.91 21.55 29.58 -169.99 -5.03 16.52 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C 0.14 2.90 6.59 -3.44 -0.02 2.88 16 26 C -0.09 -1.50 5.95 -28.09 -0.17 -1.67 16 27 C 0.13 1.39 7.01 -81.60 -0.57 0.82 16 28 C -0.10 -0.76 9.70 36.00 0.35 -0.41 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.22 8.14 -51.92 -0.42 -0.21 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.09 0.41 7.64 -51.93 -0.40 0.01 16 35 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 39 H 0.40 5.01 8.45 -40.82 -0.34 4.67 16 40 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 41 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 42 H 0.09 1.59 7.73 -52.49 -0.41 1.18 16 43 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.08 0.41 7.71 -51.93 -0.40 0.01 16 52 H 0.09 0.75 7.96 -51.93 -0.41 0.33 16 LS Contribution 425.63 15.07 6.41 6.41 Total: -1.00 -33.08 425.63 -9.87 -42.95 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.99 Total: 1.77 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.32 Total: -0.19 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.03 Total: -57.70 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -33.08 -9.87 -42.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001353665.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.207 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds