Wall clock time and date at job start Wed Apr 1 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47565 * 2 1 4 4 N 1.46504 * 109.47377 * 179.97438 * 3 2 1 5 5 N 1.39930 * 125.75355 * 89.97490 * 4 3 2 6 6 C 1.30450 * 108.89685 * 180.02562 * 5 4 3 7 7 C 1.50700 * 125.98952 * 180.02562 * 6 5 4 8 8 C 1.41292 * 108.02286 * 359.97438 * 6 5 4 9 9 C 1.47421 * 126.41718 * 179.97438 * 8 6 5 10 10 O 1.21610 * 120.00358 * 90.02368 * 9 8 6 11 11 N 1.34778 * 120.00118 * 270.02484 * 9 8 6 12 12 C 1.46503 * 120.00102 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47021 * 179.97438 * 12 11 9 14 14 C 1.29454 * 117.69519 * 94.99989 * 13 12 11 15 15 C 1.50322 * 123.65500 * 180.86104 * 14 13 12 16 16 N 1.47012 * 109.16271 * 349.01804 * 15 14 13 17 17 C 1.36934 * 121.37462 * 222.96812 * 16 15 14 18 18 H 1.08005 * 120.00007 * 155.96961 * 17 16 15 19 19 C 1.38818 * 120.00320 * 335.97331 * 17 16 15 20 20 N 1.31616 * 119.99424 * 344.52132 * 19 17 16 21 21 Si 1.86793 * 120.00033 * 164.52092 * 19 17 16 22 22 H 1.48499 * 109.47295 * 59.99993 * 21 19 17 23 23 H 1.48498 * 109.47025 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47357 * 299.99725 * 21 19 17 25 25 C 1.47333 * 117.24883 * 42.94994 * 16 15 14 26 26 C 1.49972 * 117.69466 * 274.74033 * 13 12 11 27 27 C 1.34259 * 125.75112 * 270.26528 * 4 3 2 28 28 C 1.50698 * 126.29107 * 359.97438 * 27 4 3 29 29 H 1.08997 * 109.47090 * 300.00984 * 1 2 3 30 30 H 1.09007 * 109.46556 * 60.00296 * 1 2 3 31 31 H 1.08992 * 109.47346 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47350 * 239.99498 * 2 1 3 33 33 H 1.09007 * 109.46556 * 119.99704 * 2 1 3 34 34 H 1.08998 * 109.47196 * 59.99404 * 3 2 1 35 35 H 1.09007 * 109.46942 * 299.99468 * 3 2 1 36 36 H 1.09003 * 109.47157 * 269.95513 * 7 6 5 37 37 H 1.08999 * 109.47221 * 29.95991 * 7 6 5 38 38 H 1.09000 * 109.46657 * 149.95559 * 7 6 5 39 39 H 0.96997 * 120.00055 * 359.97438 * 11 9 8 40 40 H 1.08996 * 109.47132 * 59.99990 * 12 11 9 41 41 H 1.09001 * 109.46799 * 299.99571 * 12 11 9 42 42 H 1.07997 * 118.17426 * 0.87895 * 14 13 12 43 43 H 1.08999 * 109.52720 * 108.92650 * 15 14 13 44 44 H 1.08998 * 109.52220 * 229.11921 * 15 14 13 45 45 H 0.97005 * 119.99607 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.77712 * 57.81016 * 25 16 15 47 47 H 1.08993 * 109.77988 * 178.61344 * 25 16 15 48 48 H 1.09000 * 109.31400 * 281.28746 * 26 13 12 49 49 H 1.08991 * 109.31850 * 40.71826 * 26 13 12 50 50 H 1.09004 * 109.46801 * 270.19893 * 28 27 4 51 51 H 1.08997 * 109.47464 * 30.20317 * 28 27 4 52 52 H 1.08998 * 109.47146 * 150.21294 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3232 1.4417 -1.1346 6 6 5.5715 1.4413 -0.7558 7 6 6.7730 1.4411 -1.6655 8 6 5.5996 1.4424 0.6568 9 6 6.8032 1.4418 1.5082 10 8 7.3004 2.4948 1.8589 11 7 7.3525 0.2744 1.8979 12 6 8.5489 0.2739 2.7434 13 6 8.9575 -1.1471 3.0347 14 6 9.8566 -1.6828 2.2729 15 6 10.3488 -3.0943 2.4307 16 7 9.8558 -3.6377 3.7047 17 6 10.6667 -4.3727 4.5277 18 1 10.4509 -4.4339 5.5842 19 6 11.7661 -5.0391 4.0041 20 7 11.8660 -5.2243 2.7049 21 14 13.1037 -5.6730 5.1435 22 1 12.5182 -6.6446 6.1019 23 1 14.1594 -6.3434 4.3427 24 1 13.6966 -4.5356 5.8919 25 6 8.4534 -3.3583 4.0596 26 6 8.2981 -1.8390 4.1904 27 6 4.2891 1.4375 1.0905 28 6 3.8238 1.4316 2.5239 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9563 -0.8901 36 1 7.0629 0.4133 -1.8843 37 1 6.5254 1.9544 -2.5946 38 1 7.5997 1.9554 -1.1754 39 1 6.9558 -0.5655 1.6184 40 1 8.3323 0.7884 3.6796 41 1 9.3597 0.7867 2.2260 42 1 10.2768 -1.0820 1.4799 43 1 9.9776 -3.7038 1.6068 44 1 11.4387 -3.1024 2.4288 45 1 12.6344 -5.6897 2.3390 46 1 7.7932 -3.7344 3.2780 47 1 8.2111 -3.8355 5.0091 48 1 8.7577 -1.5048 5.1206 49 1 7.2379 -1.5866 4.2045 50 1 3.7087 2.4579 2.8727 51 1 2.8667 0.9147 2.5932 52 1 4.5598 0.9182 3.1426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001353665.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:47 Heat of formation + Delta-G solvation = 40.506430 kcal Electronic energy + Delta-G solvation = -30349.964531 eV Core-core repulsion = 26350.592904 eV Total energy + Delta-G solvation = -3999.371627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.53955 -40.44129 -39.22666 -36.59682 -36.34107 -34.49617 -33.99087 -32.91550 -32.31038 -31.39331 -29.88302 -29.06548 -28.01673 -26.56838 -25.72461 -24.38313 -23.38541 -22.73104 -22.38486 -20.93516 -20.44336 -19.48793 -18.71888 -17.46081 -17.33093 -17.12778 -16.82958 -16.32025 -16.06551 -16.02594 -15.67269 -15.28801 -15.19291 -14.94444 -14.77354 -14.51470 -14.40231 -14.17995 -14.07087 -13.89410 -13.54516 -13.45042 -13.33031 -13.25647 -13.18081 -12.94846 -12.87507 -12.77408 -12.75509 -12.57099 -12.24918 -12.21042 -12.09370 -11.91854 -11.69528 -11.67502 -11.27372 -11.05726 -10.66579 -10.16657 -10.08576 -9.65419 -9.54114 -8.73746 -7.87103 -5.28281 0.66376 1.16179 1.40905 1.44141 1.47932 1.50660 1.55201 1.56911 2.52325 2.56130 3.29952 3.42968 3.52169 3.64220 3.81186 3.86367 3.89098 4.00048 4.00413 4.14793 4.25827 4.32952 4.45735 4.47121 4.50784 4.55960 4.58416 4.67098 4.68919 4.75378 4.78108 4.78815 4.86145 4.88776 4.94116 4.96529 5.01794 5.11983 5.12272 5.16065 5.23416 5.36459 5.37814 5.43854 5.49296 5.50124 5.62553 5.79452 5.96062 6.19061 6.35104 6.56284 6.60262 7.14684 7.22792 7.85003 8.38794 9.21273 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.002175 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.761395 B =12870.211871 C =13422.850337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.121 3.879 4 N -0.355 5.355 5 N -0.322 5.322 6 C 0.102 3.898 7 C -0.077 4.077 8 C -0.315 4.315 9 C 0.606 3.394 10 O -0.580 6.580 11 N -0.701 5.701 12 C 0.167 3.833 13 C -0.138 4.138 14 C -0.143 4.143 15 C 0.205 3.795 16 N -0.615 5.615 17 C -0.256 4.256 18 H 0.071 0.929 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.968 3.032 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.280 1.280 25 C 0.139 3.861 26 C -0.083 4.083 27 C 0.137 3.863 28 C -0.098 4.098 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.409 0.591 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.112 0.888 43 H 0.013 0.987 44 H 0.056 0.944 45 H 0.249 0.751 46 H 0.026 0.974 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.105 0.895 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.489 14.118 -4.442 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.002 3.998 4 N -0.134 5.134 5 N -0.143 5.143 6 C -0.064 4.064 7 C -0.135 4.135 8 C -0.330 4.330 9 C 0.392 3.608 10 O -0.460 6.460 11 N -0.351 5.351 12 C 0.044 3.956 13 C -0.138 4.138 14 C -0.164 4.164 15 C 0.080 3.920 16 N -0.339 5.339 17 C -0.386 4.386 18 H 0.089 0.911 19 C -0.250 4.250 20 N -0.586 5.586 21 Si 0.796 3.204 22 H -0.200 1.200 23 H -0.222 1.222 24 H -0.206 1.206 25 C 0.014 3.986 26 C -0.121 4.121 27 C 0.004 3.996 28 C -0.156 4.156 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.245 0.755 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.030 0.970 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.044 0.956 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.107 0.893 50 H 0.115 0.885 51 H 0.124 0.876 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.973 14.773 -5.258 28.646 hybrid contribution 1.636 -1.026 0.599 2.021 sum -22.338 13.747 -4.659 26.640 Atomic orbital electron populations 1.21675 0.92518 1.02971 1.03140 1.21880 0.98049 0.94802 1.02658 1.22245 0.71710 0.99560 1.06327 1.48618 1.07505 1.54882 1.02408 1.77040 1.01343 1.27341 1.08618 1.22596 0.94187 0.97223 0.92441 1.20296 0.91399 1.04077 0.97741 1.19869 0.92995 1.26336 0.93818 1.17434 0.82255 0.83023 0.78070 1.90749 1.64450 1.32880 1.57940 1.46072 1.29109 1.08570 1.51374 1.20287 0.87003 0.93721 0.94607 1.20608 0.99683 0.94980 0.98565 1.22952 0.97142 0.97568 0.98708 1.19392 0.97826 0.87967 0.86780 1.44406 1.07799 1.60274 1.21437 1.19481 1.06334 1.22473 0.90357 0.91139 1.25744 1.02704 0.99350 0.97194 1.70163 1.30444 1.46018 1.11996 0.85330 0.78954 0.78015 0.78099 1.20042 1.22164 1.20640 1.21177 0.84936 0.94096 0.98435 1.20720 1.00048 0.95514 0.95869 1.21769 0.89136 0.96273 0.92405 1.20716 1.03835 1.04998 0.86089 0.90780 0.91905 0.91859 0.92851 0.91190 0.85922 0.88023 0.89070 0.89439 0.90984 0.75502 0.90864 0.91950 0.87021 0.96962 0.92540 0.94156 0.95597 0.92203 0.91640 0.89288 0.88494 0.87632 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 71.98 0.71 -0.09 16 2 C -0.14 -1.30 6.26 30.59 0.19 -1.11 16 3 C 0.12 1.27 6.03 86.38 0.52 1.79 16 4 N -0.35 -6.76 3.58 -332.99 -1.19 -7.96 16 5 N -0.32 -7.94 12.50 -46.67 -0.58 -8.52 16 6 C 0.10 2.57 7.26 43.52 0.32 2.88 16 7 C -0.08 -1.60 10.28 71.24 0.73 -0.87 16 8 C -0.32 -7.95 5.88 -20.15 -0.12 -8.07 16 9 C 0.61 17.02 6.97 86.66 0.60 17.62 16 10 O -0.58 -20.59 17.11 -4.06 -0.07 -20.66 16 11 N -0.70 -17.58 5.55 -470.11 -2.61 -20.19 16 12 C 0.17 4.60 5.66 85.63 0.48 5.09 16 13 C -0.14 -4.37 5.22 -15.14 -0.08 -4.45 16 14 C -0.14 -5.31 9.47 27.11 0.26 -5.06 16 15 C 0.21 9.87 5.23 85.42 0.45 10.32 16 16 N -0.62 -30.47 3.01 -703.02 -2.11 -32.58 16 17 C -0.26 -13.99 9.71 84.04 0.82 -13.17 16 18 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 19 C -0.06 -3.07 5.01 84.86 0.43 -2.65 16 20 N -0.94 -55.33 11.08 21.65 0.24 -55.09 16 21 Si 0.97 44.87 29.58 68.60 2.03 46.90 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 C 0.14 5.42 6.59 86.32 0.57 5.99 16 26 C -0.08 -2.58 5.95 29.72 0.18 -2.40 16 27 C 0.14 2.70 7.01 42.14 0.30 3.00 16 28 C -0.10 -1.20 9.70 71.24 0.69 -0.51 16 29 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.12 0.60 7.64 -2.39 -0.02 0.58 16 35 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.59 8.01 -2.39 -0.02 1.57 16 39 H 0.41 9.34 8.45 -92.71 -0.78 8.56 16 40 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 41 H 0.06 1.82 7.78 -2.39 -0.02 1.80 16 42 H 0.11 3.72 7.73 -2.91 -0.02 3.70 16 43 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 3.09 6.41 -2.39 -0.02 3.07 16 45 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 46 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.06 2.27 7.96 -2.39 -0.02 2.25 16 48 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 49 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 51 H 0.11 0.67 7.71 -2.39 -0.02 0.65 16 52 H 0.09 1.16 7.96 -2.39 -0.02 1.14 16 Total: -1.00 -73.39 425.63 2.87 -70.52 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.12 Total: 19.27 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 7.04 Total: 8.31 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -6.26 Total: -124.34 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.07 Total: -20.66 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.39 2.87 -70.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001353665.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.027 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds