Wall clock time and date at job start Wed Apr 1 2020 04:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 N 1.46494 * 109.47421 * 180.02562 * 3 2 1 5 5 N 1.39941 * 125.75726 * 270.15420 * 4 3 2 6 6 C 1.30444 * 108.89810 * 180.29457 * 5 4 3 7 7 C 1.41296 * 108.02425 * 359.74402 * 6 5 4 8 8 C 1.47427 * 126.41677 * 179.97438 * 7 6 5 9 9 O 1.21602 * 120.00137 * 174.50110 * 8 7 6 10 10 N 1.34780 * 119.99850 * 354.50198 * 8 7 6 11 11 C 1.46497 * 120.00148 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.49961 * 325.00360 * 11 10 8 13 13 C 1.53038 * 109.50065 * 204.93546 * 11 10 8 14 14 C 1.53039 * 109.54070 * 178.68363 * 13 11 10 15 15 C 1.53192 * 109.31331 * 61.36377 * 14 13 11 16 16 N 1.46931 * 108.77675 * 305.36837 * 15 14 13 17 17 C 1.36936 * 120.62858 * 233.60771 * 16 15 14 18 18 H 1.08002 * 119.99860 * 31.40027 * 17 16 15 19 19 C 1.38811 * 119.99628 * 211.39627 * 17 16 15 20 20 N 1.31621 * 120.00197 * 18.59310 * 19 17 16 21 21 Si 1.86805 * 119.99828 * 198.59010 * 19 17 16 22 22 H 1.48493 * 109.46969 * 90.00455 * 21 19 17 23 23 H 1.48501 * 109.46885 * 210.00413 * 21 19 17 24 24 H 1.48498 * 109.46960 * 330.00280 * 21 19 17 25 25 C 1.46934 * 118.76403 * 53.58539 * 16 15 14 26 26 C 1.34264 * 125.75464 * 90.00122 * 4 3 2 27 27 C 1.50697 * 126.29091 * 359.97438 * 26 4 3 28 28 C 1.53005 * 117.49722 * 48.56916 * 27 26 4 29 29 C 1.52995 * 117.50222 * 117.19592 * 27 26 4 30 30 H 1.08999 * 109.47595 * 60.00007 * 1 2 3 31 31 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46916 * 299.99508 * 1 2 3 33 33 H 1.09002 * 109.46916 * 240.00492 * 2 1 3 34 34 H 1.09001 * 109.47697 * 120.00527 * 2 1 3 35 35 H 1.09002 * 109.46777 * 60.00407 * 3 2 1 36 36 H 1.08999 * 109.46834 * 300.00459 * 3 2 1 37 37 H 1.08000 * 125.98970 * 179.78426 * 6 5 4 38 38 H 0.97003 * 120.00004 * 0.02562 * 10 8 7 39 39 H 1.08996 * 109.46084 * 298.70415 * 13 11 10 40 40 H 1.09009 * 109.45836 * 58.66611 * 13 11 10 41 41 H 1.08995 * 109.49829 * 181.32022 * 14 13 11 42 42 H 1.09010 * 109.49667 * 301.38548 * 14 13 11 43 43 H 1.09003 * 109.58054 * 65.15420 * 15 14 13 44 44 H 1.08994 * 109.58816 * 185.43636 * 15 14 13 45 45 H 0.96995 * 119.99739 * 179.97438 * 20 19 17 46 46 H 1.08993 * 109.61533 * 186.64254 * 25 16 15 47 47 H 1.09000 * 109.56026 * 66.21437 * 25 16 15 48 48 H 1.08999 * 115.55978 * 262.88770 * 27 26 4 49 49 H 1.09002 * 117.49651 * 214.97702 * 28 27 26 50 50 H 1.08998 * 117.50150 * 0.02562 * 28 27 26 51 51 H 1.08999 * 117.49725 * 359.97438 * 29 27 26 52 52 H 1.08998 * 117.50373 * 145.02263 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.3231 1.4393 1.1347 6 6 5.5713 1.4468 0.7558 7 6 5.5995 1.4492 -0.6568 8 6 6.8031 1.4577 -1.5082 9 8 6.6947 1.3580 -2.7153 10 7 8.0235 1.5759 -0.9486 11 6 9.2195 1.5838 -1.7945 12 1 9.0692 0.9167 -2.6434 13 6 10.4249 1.1097 -0.9794 14 6 11.6685 1.0863 -1.8710 15 6 11.9550 2.5031 -2.3783 16 7 10.7491 3.0220 -3.0382 17 6 10.8085 3.5109 -4.3159 18 1 11.5182 3.1001 -5.0188 19 6 9.9567 4.5345 -4.7076 20 7 9.3623 5.2798 -3.8000 21 14 9.6539 4.8544 -6.5230 22 1 8.4933 4.0491 -6.9806 23 1 9.3682 6.2968 -6.7305 24 1 10.8596 4.4716 -7.3008 25 6 9.4777 3.0061 -2.3017 26 6 4.2890 1.4428 -1.0905 27 6 3.8238 1.4424 -2.5239 28 6 2.7511 2.4595 -2.9188 29 6 4.1952 2.6495 -3.3875 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6766 1.9563 -0.8899 37 1 6.4324 1.4499 1.4077 38 1 8.1100 1.6550 0.0143 39 1 10.5894 1.7910 -0.1447 40 1 10.2331 0.1070 -0.5973 41 1 12.5216 0.7263 -1.2960 42 1 11.4957 0.4237 -2.7192 43 1 12.2171 3.1460 -1.5380 44 1 12.7805 2.4766 -3.0895 45 1 8.7674 5.9952 -4.0738 46 1 8.6674 3.3107 -2.9639 47 1 9.5377 3.6905 -1.4554 48 1 3.7949 0.4666 -3.0087 49 1 2.0166 2.1529 -3.6634 50 1 2.3822 3.1292 -2.1419 51 1 4.7757 3.4442 -2.9187 52 1 4.4106 2.4680 -4.4404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009140601.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:14 Heat of formation + Delta-G solvation = 76.887773 kcal Electronic energy + Delta-G solvation = -31518.766068 eV Core-core repulsion = 27520.972054 eV Total energy + Delta-G solvation = -3997.794014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.56267 -38.95331 -37.15893 -36.98032 -35.56055 -33.93323 -32.58585 -31.71445 -30.30107 -29.94398 -28.70391 -26.61097 -25.18156 -23.87085 -22.81748 -22.38215 -22.09460 -21.98137 -21.34234 -19.93807 -19.54830 -18.96516 -17.40454 -16.66040 -16.16609 -15.75193 -15.37114 -15.28897 -14.96564 -14.72292 -14.52870 -14.09024 -13.95647 -13.83340 -13.61190 -13.28131 -13.23141 -12.86596 -12.61256 -12.39014 -12.30682 -12.24035 -12.04228 -11.77361 -11.75302 -11.50434 -11.25743 -11.16261 -10.97555 -10.69803 -10.67132 -10.53556 -10.42206 -10.23266 -10.18458 -9.90889 -9.88072 -9.43444 -9.42088 -9.19831 -8.59959 -8.37144 -8.29055 -6.54874 -5.70784 -3.15868 1.57980 2.21661 2.28049 3.45935 3.52626 3.53371 3.66375 3.76269 3.93845 4.23426 4.32562 4.45221 4.58812 4.66770 4.77147 4.80993 4.92224 5.02213 5.09170 5.16637 5.26900 5.34042 5.42089 5.43504 5.47722 5.49085 5.56988 5.61049 5.65772 5.70472 5.74945 5.80316 5.88946 5.95581 6.13549 6.16565 6.22819 6.24912 6.38557 6.44442 6.49689 6.60233 6.78499 6.80128 6.85914 7.03283 7.11425 7.37511 7.54509 7.76152 7.90043 8.15162 8.55530 8.89437 9.29005 9.92587 10.50321 11.36997 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012766 B = 0.003183 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.719529 B = 8794.901716 C =10427.176570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.123 3.877 4 N -0.357 5.357 5 N -0.301 5.301 6 C 0.079 3.921 7 C -0.279 4.279 8 C 0.588 3.412 9 O -0.532 6.532 10 N -0.719 5.719 11 C 0.121 3.879 12 H 0.081 0.919 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.143 3.857 16 N -0.587 5.587 17 C -0.259 4.259 18 H 0.063 0.937 19 C 0.011 3.989 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.172 3.828 26 C 0.183 3.817 27 C -0.097 4.097 28 C -0.191 4.191 29 C -0.121 4.121 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.188 0.812 38 H 0.389 0.611 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.017 0.983 44 H 0.054 0.946 45 H 0.253 0.747 46 H 0.085 0.915 47 H 0.017 0.983 48 H 0.127 0.873 49 H 0.102 0.898 50 H 0.091 0.909 51 H 0.099 0.901 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.116 -9.913 9.905 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.002 3.998 4 N -0.136 5.136 5 N -0.120 5.120 6 C -0.108 4.108 7 C -0.294 4.294 8 C 0.374 3.626 9 O -0.409 6.409 10 N -0.369 5.369 11 C 0.016 3.984 12 H 0.100 0.900 13 C -0.154 4.154 14 C -0.171 4.171 15 C 0.016 3.984 16 N -0.310 5.310 17 C -0.388 4.388 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.538 5.538 21 Si 0.728 3.272 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.204 1.204 25 C 0.045 3.955 26 C 0.051 3.949 27 C -0.117 4.117 28 C -0.228 4.228 29 C -0.158 4.158 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.205 0.795 38 H 0.222 0.778 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.035 0.965 48 H 0.145 0.855 49 H 0.120 0.880 50 H 0.110 0.890 51 H 0.117 0.883 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.223 -9.822 10.017 21.448 hybrid contribution 0.421 0.246 -0.843 0.974 sum -15.802 -9.576 9.174 20.630 Atomic orbital electron populations 1.21691 0.94212 1.02511 1.02248 1.21910 0.96721 0.95687 1.03500 1.22001 0.73993 0.98851 1.04908 1.48439 1.06487 1.55541 1.03123 1.77128 1.01879 1.25464 1.07517 1.23992 0.95268 0.97586 0.93975 1.20156 0.93174 1.22721 0.93369 1.17121 0.82029 0.76406 0.87024 1.90795 1.86300 1.49840 1.13935 1.45839 1.05996 1.75105 1.10008 1.21887 0.81818 1.02029 0.92647 0.90045 1.21674 0.95519 0.99811 0.98418 1.22000 0.95981 1.00299 0.98783 1.20952 0.90658 0.91191 0.95570 1.43934 1.01689 1.71729 1.13681 1.19088 1.20527 1.12532 0.86673 0.91894 1.25084 1.01134 0.95229 0.97415 1.70054 1.32571 1.19291 1.31841 0.86360 0.78422 0.76873 0.85528 1.21206 1.21861 1.20420 1.21001 0.89961 0.89252 0.95323 1.20515 0.89814 0.95558 0.89031 1.20397 1.04812 0.97404 0.89046 1.23203 0.93533 1.02151 1.03880 1.22835 0.94963 0.97746 1.00290 0.92199 0.91941 0.92289 0.91142 0.90992 0.88668 0.88144 0.79512 0.77825 0.92308 0.93121 0.92741 0.92171 0.96492 0.92705 0.93756 0.89664 0.96488 0.85494 0.87976 0.89024 0.88265 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.14 -1.04 6.26 -26.73 -0.17 -1.21 16 3 C 0.12 1.06 6.20 -4.04 -0.03 1.04 16 4 N -0.36 -4.42 3.58 -56.61 -0.20 -4.63 16 5 N -0.30 -4.09 12.50 30.86 0.39 -3.71 16 6 C 0.08 1.04 11.50 -16.98 -0.20 0.85 16 7 C -0.28 -4.34 6.12 -105.07 -0.64 -4.98 16 8 C 0.59 10.78 7.78 -12.52 -0.10 10.68 16 9 O -0.53 -11.60 14.34 5.28 0.08 -11.53 16 10 N -0.72 -12.16 5.07 -54.76 -0.28 -12.44 16 11 C 0.12 2.39 2.60 -67.81 -0.18 2.22 16 12 H 0.08 1.82 7.58 -51.93 -0.39 1.43 16 13 C -0.12 -1.90 5.35 -26.69 -0.14 -2.04 16 14 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 15 C 0.14 3.01 6.51 -3.71 -0.02 2.99 16 16 N -0.59 -15.08 2.97 -172.31 -0.51 -15.60 16 17 C -0.26 -7.32 9.53 -15.06 -0.14 -7.47 16 18 H 0.06 1.75 7.90 -52.49 -0.41 1.34 16 19 C 0.01 0.32 4.84 -17.43 -0.08 0.24 16 20 N -0.89 -26.80 11.56 55.49 0.64 -26.16 16 21 Si 0.90 22.52 29.59 -169.99 -5.03 17.49 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.17 4.22 4.87 -3.70 -0.02 4.20 16 26 C 0.18 2.58 6.44 -81.60 -0.53 2.05 16 27 C -0.10 -1.25 5.02 -91.77 -0.46 -1.71 16 28 C -0.19 -1.96 8.80 -26.72 -0.24 -2.19 16 29 C -0.12 -1.72 8.95 -26.73 -0.24 -1.96 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.74 5.11 -51.93 -0.27 0.47 16 37 H 0.19 1.82 7.53 -52.49 -0.40 1.43 16 38 H 0.39 5.25 7.58 -40.82 -0.31 4.94 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.09 2.45 6.38 -51.93 -0.33 2.12 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 49 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.09 0.88 6.91 -51.93 -0.36 0.52 16 51 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 52 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 413.22 15.07 6.23 6.23 Total: -1.00 -34.23 413.22 -10.44 -44.68 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.78 Total: 5.79 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.97 Total: -0.13 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.03 Total: -62.52 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.23 -10.44 -44.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009140601.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.566 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds