Wall clock time and date at job start Wed Apr 1 2020 04:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 N 1.46494 * 109.47421 * 180.02562 * 3 2 1 5 5 N 1.39941 * 125.75726 * 270.15420 * 4 3 2 6 6 C 1.30444 * 108.89810 * 180.29457 * 5 4 3 7 7 C 1.41296 * 108.02425 * 359.74402 * 6 5 4 8 8 C 1.47427 * 126.41677 * 179.97438 * 7 6 5 9 9 O 1.21602 * 120.00137 * 174.50110 * 8 7 6 10 10 N 1.34780 * 119.99850 * 354.50198 * 8 7 6 11 11 C 1.46497 * 120.00148 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.49961 * 325.00360 * 11 10 8 13 13 C 1.53038 * 109.50065 * 204.93546 * 11 10 8 14 14 C 1.53039 * 109.54070 * 178.68363 * 13 11 10 15 15 C 1.53192 * 109.31331 * 61.36377 * 14 13 11 16 16 N 1.46931 * 108.77675 * 305.36837 * 15 14 13 17 17 C 1.36936 * 120.62858 * 233.60771 * 16 15 14 18 18 H 1.08002 * 119.99860 * 31.40027 * 17 16 15 19 19 C 1.38811 * 119.99628 * 211.39627 * 17 16 15 20 20 N 1.31621 * 120.00197 * 18.59310 * 19 17 16 21 21 Si 1.86805 * 119.99828 * 198.59010 * 19 17 16 22 22 H 1.48493 * 109.46969 * 90.00455 * 21 19 17 23 23 H 1.48501 * 109.46885 * 210.00413 * 21 19 17 24 24 H 1.48498 * 109.46960 * 330.00280 * 21 19 17 25 25 C 1.46934 * 118.76403 * 53.58539 * 16 15 14 26 26 C 1.34264 * 125.75464 * 90.00122 * 4 3 2 27 27 C 1.50697 * 126.29091 * 359.97438 * 26 4 3 28 28 C 1.53005 * 117.49722 * 48.56916 * 27 26 4 29 29 C 1.52995 * 117.50222 * 117.19592 * 27 26 4 30 30 H 1.08999 * 109.47595 * 60.00007 * 1 2 3 31 31 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46916 * 299.99508 * 1 2 3 33 33 H 1.09002 * 109.46916 * 240.00492 * 2 1 3 34 34 H 1.09001 * 109.47697 * 120.00527 * 2 1 3 35 35 H 1.09002 * 109.46777 * 60.00407 * 3 2 1 36 36 H 1.08999 * 109.46834 * 300.00459 * 3 2 1 37 37 H 1.08000 * 125.98970 * 179.78426 * 6 5 4 38 38 H 0.97003 * 120.00004 * 0.02562 * 10 8 7 39 39 H 1.08996 * 109.46084 * 298.70415 * 13 11 10 40 40 H 1.09009 * 109.45836 * 58.66611 * 13 11 10 41 41 H 1.08995 * 109.49829 * 181.32022 * 14 13 11 42 42 H 1.09010 * 109.49667 * 301.38548 * 14 13 11 43 43 H 1.09003 * 109.58054 * 65.15420 * 15 14 13 44 44 H 1.08994 * 109.58816 * 185.43636 * 15 14 13 45 45 H 0.96995 * 119.99739 * 179.97438 * 20 19 17 46 46 H 1.08993 * 109.61533 * 186.64254 * 25 16 15 47 47 H 1.09000 * 109.56026 * 66.21437 * 25 16 15 48 48 H 1.08999 * 115.55978 * 262.88770 * 27 26 4 49 49 H 1.09002 * 117.49651 * 214.97702 * 28 27 26 50 50 H 1.08998 * 117.50150 * 0.02562 * 28 27 26 51 51 H 1.08999 * 117.49725 * 359.97438 * 29 27 26 52 52 H 1.08998 * 117.50373 * 145.02263 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.3231 1.4393 1.1347 6 6 5.5713 1.4468 0.7558 7 6 5.5995 1.4492 -0.6568 8 6 6.8031 1.4577 -1.5082 9 8 6.6947 1.3580 -2.7153 10 7 8.0235 1.5759 -0.9486 11 6 9.2195 1.5838 -1.7945 12 1 9.0692 0.9167 -2.6434 13 6 10.4249 1.1097 -0.9794 14 6 11.6685 1.0863 -1.8710 15 6 11.9550 2.5031 -2.3783 16 7 10.7491 3.0220 -3.0382 17 6 10.8085 3.5109 -4.3159 18 1 11.5182 3.1001 -5.0188 19 6 9.9567 4.5345 -4.7076 20 7 9.3623 5.2798 -3.8000 21 14 9.6539 4.8544 -6.5230 22 1 8.4933 4.0491 -6.9806 23 1 9.3682 6.2968 -6.7305 24 1 10.8596 4.4716 -7.3008 25 6 9.4777 3.0061 -2.3017 26 6 4.2890 1.4428 -1.0905 27 6 3.8238 1.4424 -2.5239 28 6 2.7511 2.4595 -2.9188 29 6 4.1952 2.6495 -3.3875 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6766 1.9563 -0.8899 37 1 6.4324 1.4499 1.4077 38 1 8.1100 1.6550 0.0143 39 1 10.5894 1.7910 -0.1447 40 1 10.2331 0.1070 -0.5973 41 1 12.5216 0.7263 -1.2960 42 1 11.4957 0.4237 -2.7192 43 1 12.2171 3.1460 -1.5380 44 1 12.7805 2.4766 -3.0895 45 1 8.7674 5.9952 -4.0738 46 1 8.6674 3.3107 -2.9639 47 1 9.5377 3.6905 -1.4554 48 1 3.7949 0.4666 -3.0087 49 1 2.0166 2.1529 -3.6634 50 1 2.3822 3.1292 -2.1419 51 1 4.7757 3.4442 -2.9187 52 1 4.4106 2.4680 -4.4404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009140601.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:12 Heat of formation + Delta-G solvation = 55.387436 kcal Electronic energy + Delta-G solvation = -31519.698392 eV Core-core repulsion = 27520.972054 eV Total energy + Delta-G solvation = -3998.726338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.62158 -40.46487 -38.73832 -38.07657 -36.28910 -35.67781 -34.36391 -32.61222 -31.91266 -31.43466 -30.18881 -27.46186 -27.18922 -25.00590 -23.96027 -23.76906 -23.58782 -22.78429 -22.63797 -21.17072 -21.04552 -20.26934 -18.73496 -18.54953 -17.20442 -17.17529 -16.62881 -16.55601 -16.10227 -15.94474 -15.78143 -15.56726 -15.43535 -15.19055 -14.89749 -14.71824 -14.59322 -14.13360 -14.04595 -13.86955 -13.43340 -13.23321 -13.08373 -12.96818 -12.94245 -12.69564 -12.53363 -12.45417 -12.34684 -12.27395 -12.19500 -12.03548 -11.85561 -11.66484 -11.54272 -11.48811 -11.24645 -11.20622 -10.69806 -10.55677 -10.40473 -10.03178 -9.59278 -8.63512 -7.88322 -5.36637 0.45929 1.16173 1.28881 1.40705 1.46054 1.51986 2.33300 2.51253 2.57010 2.68685 3.27239 3.30900 3.42526 3.76736 3.81663 3.83878 3.88285 3.92929 4.01863 4.06241 4.18273 4.19706 4.24130 4.31459 4.34993 4.48456 4.52767 4.55415 4.65225 4.65560 4.80212 4.82558 4.84996 4.92359 4.96084 5.03057 5.09568 5.11738 5.11971 5.12893 5.23327 5.27331 5.34799 5.36139 5.40724 5.51298 5.57307 5.64913 5.81254 5.84068 6.39033 6.49078 6.80407 7.13712 7.49701 7.86074 8.37767 9.16011 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012766 B = 0.003183 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.719529 B = 8794.901716 C =10427.176570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.113 3.887 4 N -0.349 5.349 5 N -0.312 5.312 6 C 0.086 3.914 7 C -0.310 4.310 8 C 0.583 3.417 9 O -0.576 6.576 10 N -0.709 5.709 11 C 0.138 3.862 12 H 0.051 0.949 13 C -0.107 4.107 14 C -0.121 4.121 15 C 0.135 3.865 16 N -0.609 5.609 17 C -0.267 4.267 18 H 0.064 0.936 19 C -0.044 4.044 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.292 1.292 23 H -0.291 1.291 24 H -0.262 1.262 25 C 0.186 3.814 26 C 0.181 3.819 27 C -0.103 4.103 28 C -0.145 4.145 29 C -0.153 4.153 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.218 0.782 38 H 0.409 0.591 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.020 0.980 44 H 0.054 0.946 45 H 0.247 0.753 46 H 0.033 0.967 47 H -0.003 1.003 48 H 0.131 0.869 49 H 0.134 0.866 50 H 0.104 0.896 51 H 0.063 0.937 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.215 -11.449 11.447 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C -0.006 4.006 4 N -0.127 5.127 5 N -0.131 5.131 6 C -0.101 4.101 7 C -0.325 4.325 8 C 0.372 3.628 9 O -0.457 6.457 10 N -0.360 5.360 11 C 0.031 3.969 12 H 0.070 0.930 13 C -0.145 4.145 14 C -0.160 4.160 15 C 0.011 3.989 16 N -0.333 5.333 17 C -0.398 4.398 18 H 0.082 0.918 19 C -0.241 4.241 20 N -0.572 5.572 21 Si 0.787 3.213 22 H -0.220 1.220 23 H -0.217 1.217 24 H -0.187 1.187 25 C 0.059 3.941 26 C 0.047 3.953 27 C -0.122 4.122 28 C -0.182 4.182 29 C -0.191 4.191 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.235 0.765 38 H 0.245 0.755 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.015 0.985 48 H 0.149 0.851 49 H 0.153 0.847 50 H 0.123 0.877 51 H 0.082 0.918 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.315 -11.381 11.622 23.757 hybrid contribution 0.756 0.729 -1.294 1.666 sum -16.559 -10.652 10.328 22.234 Atomic orbital electron populations 1.21674 0.92232 1.03112 1.03180 1.21847 0.98279 0.94482 1.02510 1.22408 0.71790 1.00068 1.06320 1.48746 1.07669 1.54077 1.02206 1.77101 1.02086 1.25807 1.08121 1.24418 0.96169 0.96381 0.93116 1.20057 0.92615 1.25461 0.94333 1.17601 0.83068 0.75330 0.86819 1.90766 1.86970 1.51897 1.16025 1.45639 1.04966 1.74634 1.10759 1.21415 0.84462 0.97873 0.93121 0.93030 1.21645 0.93001 1.01968 0.97902 1.21896 0.97914 0.97067 0.99150 1.21173 0.88876 0.93522 0.95372 1.44221 1.03543 1.72047 1.13445 1.19421 1.20136 1.12008 0.88216 0.91822 1.25839 1.01494 0.95512 1.01238 1.70192 1.33463 1.19961 1.33538 0.85400 0.78343 0.76441 0.81147 1.21964 1.21701 1.18679 1.20690 0.88256 0.91875 0.93274 1.20686 0.89903 0.94750 0.89941 1.20442 1.06168 0.97376 0.88248 1.23330 0.91613 0.99640 1.03613 1.22635 0.98582 0.98179 0.99709 0.91094 0.91545 0.91543 0.91906 0.92240 0.87415 0.86555 0.76515 0.75528 0.90782 0.89590 0.88508 0.93001 0.96251 0.92747 0.94420 0.94876 0.98468 0.85122 0.84749 0.87733 0.91842 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.91 71.98 0.71 -0.42 16 2 C -0.13 -1.72 6.26 30.59 0.19 -1.52 16 3 C 0.11 1.70 6.20 86.38 0.54 2.23 16 4 N -0.35 -8.19 3.58 -333.01 -1.19 -9.39 16 5 N -0.31 -8.04 12.50 -56.27 -0.70 -8.74 16 6 C 0.09 2.17 11.50 85.65 0.99 3.16 16 7 C -0.31 -9.71 6.12 -20.15 -0.12 -9.84 16 8 C 0.58 22.27 7.78 86.66 0.67 22.95 16 9 O -0.58 -26.89 14.34 -4.04 -0.06 -26.95 16 10 N -0.71 -24.19 5.07 -445.43 -2.26 -26.45 16 11 C 0.14 5.51 2.60 45.07 0.12 5.62 16 12 H 0.05 2.39 7.58 -2.39 -0.02 2.38 16 13 C -0.11 -3.25 5.35 30.62 0.16 -3.09 16 14 C -0.12 -3.86 6.08 30.67 0.19 -3.68 16 15 C 0.14 5.64 6.51 86.36 0.56 6.21 16 16 N -0.61 -32.16 2.97 -699.07 -2.08 -34.24 16 17 C -0.27 -15.63 9.53 84.03 0.80 -14.83 16 18 H 0.06 3.63 7.90 -2.91 -0.02 3.60 16 19 C -0.04 -2.65 4.84 84.86 0.41 -2.24 16 20 N -0.93 -58.37 11.56 21.65 0.25 -58.12 16 21 Si 0.96 48.03 29.59 68.60 2.03 50.06 16 22 H -0.29 -14.85 7.11 99.48 0.71 -14.15 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 25 C 0.19 9.58 4.87 86.36 0.42 10.00 16 26 C 0.18 5.09 6.44 42.14 0.27 5.36 16 27 C -0.10 -2.66 5.02 -11.54 -0.06 -2.72 16 28 C -0.15 -2.76 8.80 30.60 0.27 -2.49 16 29 C -0.15 -4.64 8.95 30.60 0.27 -4.37 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.12 1.36 5.11 -2.39 -0.01 1.34 16 37 H 0.22 3.75 7.53 -2.91 -0.02 3.72 16 38 H 0.41 10.56 7.58 -92.71 -0.70 9.86 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.05 2.23 7.94 -2.39 -0.02 2.21 16 45 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.03 2.03 6.38 -2.39 -0.02 2.02 16 47 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 48 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 49 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.10 1.75 6.91 -2.39 -0.02 1.73 16 51 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 52 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -80.72 413.22 2.60 -78.13 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.21 Total: 25.37 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 6.40 Total: 10.34 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -5.98 Total: -136.94 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.06 Total: -26.95 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -80.72 2.60 -78.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009140601.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.514 kcal (2) G-P(sol) polarization free energy of solvation -80.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds