Wall clock time and date at job start Wed Apr 1 2020 04:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 N 1.46500 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.34261 * 125.75331 * 124.99973 * 4 3 2 6 6 C 1.38047 * 107.41573 * 180.02562 * 5 4 3 7 7 C 1.47422 * 126.41593 * 179.97438 * 6 5 4 8 8 O 1.21608 * 120.00075 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00162 * 0.02562 * 7 6 5 10 10 C 1.46493 * 120.00167 * 180.02562 * 9 7 6 11 11 H 1.09004 * 115.55670 * 350.67955 * 10 9 7 12 12 C 1.53029 * 117.50531 * 136.41750 * 10 9 7 13 13 C 1.52816 * 117.50003 * 205.00054 * 10 9 7 14 14 C 1.53187 * 117.71684 * 144.90047 * 13 10 9 15 15 C 1.53345 * 108.77445 * 158.88909 * 14 13 10 16 16 N 1.46830 * 108.81788 * 51.30551 * 15 14 13 17 17 C 1.36936 * 120.38559 * 123.12676 * 16 15 14 18 18 H 1.08005 * 120.00232 * 208.88655 * 17 16 15 19 19 C 1.38810 * 119.99845 * 28.88397 * 17 16 15 20 20 N 1.31615 * 120.00360 * 17.85543 * 19 17 16 21 21 Si 1.86803 * 119.99788 * 197.85586 * 19 17 16 22 22 H 1.48494 * 109.47369 * 59.99834 * 21 19 17 23 23 H 1.48496 * 109.46924 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47101 * 299.99746 * 21 19 17 25 25 C 1.46855 * 119.23496 * 303.10266 * 16 15 14 26 26 C 1.53184 * 117.71893 * 0.13887 * 13 10 9 27 27 C 1.41290 * 107.17027 * 359.97438 * 6 5 4 28 28 C 1.50704 * 125.98826 * 179.97438 * 27 6 5 29 29 N 1.30452 * 108.02194 * 0.23497 * 27 6 5 30 30 H 1.08999 * 109.47320 * 300.00505 * 1 2 3 31 31 H 1.09007 * 109.46992 * 60.00498 * 1 2 3 32 32 H 1.09003 * 109.47413 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47320 * 239.99495 * 2 1 3 34 34 H 1.09001 * 109.46836 * 119.99954 * 2 1 3 35 35 H 1.08999 * 109.47436 * 59.99566 * 3 2 1 36 36 H 1.09007 * 109.46781 * 299.99631 * 3 2 1 37 37 H 1.07999 * 126.29387 * 359.97438 * 5 4 3 38 38 H 0.97003 * 119.99740 * 0.02562 * 9 7 6 39 39 H 1.09002 * 117.50492 * 214.95882 * 12 10 9 40 40 H 1.09007 * 117.50055 * 359.97438 * 12 10 9 41 41 H 1.09006 * 109.58899 * 278.67437 * 14 13 10 42 42 H 1.09002 * 109.58883 * 39.09782 * 14 13 10 43 43 H 1.09002 * 109.57639 * 291.50592 * 15 14 13 44 44 H 1.09005 * 109.58188 * 171.11041 * 15 14 13 45 45 H 0.97000 * 120.00387 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.57975 * 297.10456 * 25 16 15 47 47 H 1.08998 * 109.57934 * 176.70287 * 25 16 15 48 48 H 1.09004 * 109.58496 * 320.90696 * 26 13 10 49 49 H 1.09001 * 109.58865 * 81.33165 * 26 13 10 50 50 H 1.09006 * 109.46554 * 90.00625 * 28 27 6 51 51 H 1.08992 * 109.47073 * 330.00837 * 28 27 6 52 52 H 1.08999 * 109.47046 * 210.00083 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2899 2.0673 -0.8917 6 6 5.6001 1.8177 -0.5357 7 6 6.8043 2.3050 -1.2326 8 8 7.9085 2.0122 -0.8155 9 7 6.6816 3.0750 -2.3320 10 6 7.8783 3.5587 -3.0248 11 1 8.8223 3.3893 -2.5068 12 6 7.8876 3.4867 -4.5534 13 6 7.7466 4.8371 -3.8516 14 6 8.9476 5.7873 -3.8904 15 6 8.8305 6.6802 -5.1316 16 7 7.4941 7.2879 -5.1536 17 6 7.3528 8.6494 -5.1918 18 1 6.4808 9.1143 -4.7560 19 6 8.3305 9.4320 -5.7906 20 7 9.1976 8.8848 -6.6158 21 14 8.4154 11.2620 -5.4252 22 1 8.6330 11.4668 -3.9707 23 1 9.5393 11.8666 -6.1844 24 1 7.1409 11.9074 -5.8308 25 6 6.3105 6.4187 -5.1346 26 6 6.3764 5.5207 -3.8933 27 6 5.5708 1.0079 0.6217 28 6 6.7716 0.4851 1.3674 29 7 4.3222 0.7874 0.9286 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 3.9573 2.6561 -1.7337 38 1 5.8008 3.3088 -2.6644 39 1 8.8378 3.2696 -5.0413 40 1 7.0033 3.0789 -5.0434 41 1 8.9524 6.4070 -2.9936 42 1 9.8699 5.2087 -3.9421 43 1 8.9730 6.0783 -6.0292 44 1 9.5874 7.4635 -5.0908 45 1 9.8805 9.4318 -7.0345 46 1 6.2968 5.8006 -6.0323 47 1 5.4090 7.0300 -5.0958 48 1 5.5926 4.7651 -3.9468 49 1 6.2426 6.1261 -2.9968 50 1 7.0617 1.2011 2.1364 51 1 7.5985 0.3444 0.6714 52 1 6.5230 -0.4682 1.8337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016894966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:10 Heat of formation + Delta-G solvation = 73.126041 kcal Electronic energy + Delta-G solvation = -30288.160557 eV Core-core repulsion = 26290.203422 eV Total energy + Delta-G solvation = -3997.957135 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.68511 -39.64269 -38.16317 -35.94434 -35.42409 -33.28106 -32.74826 -31.66849 -30.43428 -29.88380 -29.07528 -28.22207 -26.13547 -24.33969 -23.35381 -22.44943 -22.25706 -21.74389 -20.92965 -20.13570 -19.72150 -18.24583 -17.83498 -16.59183 -16.36394 -16.13957 -15.78303 -15.31084 -14.81309 -14.68266 -14.41322 -14.14782 -14.02034 -13.79886 -13.51140 -13.36065 -13.34280 -13.11473 -12.89861 -12.66915 -12.62741 -12.43516 -12.26600 -12.11335 -11.84990 -11.61739 -11.57916 -11.43931 -11.30008 -10.98191 -10.94459 -10.71791 -10.44288 -10.32380 -9.95965 -9.86242 -9.66762 -9.61175 -9.58465 -9.31883 -8.92212 -8.44205 -8.35025 -6.63711 -5.78539 -3.21795 1.26125 1.99818 2.00995 3.22138 3.37839 3.38989 3.44471 3.45837 3.90936 4.25447 4.25777 4.30564 4.43815 4.49891 4.62861 4.73763 4.89860 4.95439 5.02508 5.10201 5.13693 5.17345 5.20179 5.24118 5.39684 5.44917 5.49747 5.50735 5.58540 5.65155 5.67678 5.76714 5.85220 5.91878 6.07815 6.09882 6.14422 6.29729 6.36815 6.45081 6.50519 6.61307 6.66582 6.67279 6.71651 6.85555 6.96489 7.33778 7.38355 7.62757 7.68439 7.79429 8.34653 8.46924 9.22159 9.85821 10.42423 11.29098 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.002171 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.039890 B =12892.009882 C =13935.871082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.129 3.871 4 N -0.358 5.358 5 C 0.099 3.901 6 C -0.286 4.286 7 C 0.596 3.404 8 O -0.543 6.543 9 N -0.695 5.695 10 C 0.074 3.926 11 H 0.133 0.867 12 C -0.183 4.183 13 C -0.097 4.097 14 C -0.106 4.106 15 C 0.173 3.827 16 N -0.589 5.589 17 C -0.254 4.254 18 H 0.063 0.937 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.150 3.850 26 C -0.096 4.096 27 C 0.132 3.868 28 C -0.077 4.077 29 N -0.301 5.301 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.181 0.819 38 H 0.396 0.604 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.018 0.982 44 H 0.090 0.910 45 H 0.254 0.746 46 H 0.019 0.981 47 H 0.053 0.947 48 H 0.043 0.957 49 H 0.063 0.937 50 H 0.079 0.921 51 H 0.096 0.904 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.093 -18.093 11.829 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.008 3.992 4 N -0.135 5.135 5 C -0.052 4.052 6 C -0.301 4.301 7 C 0.384 3.616 8 O -0.422 6.422 9 N -0.344 5.344 10 C -0.032 4.032 11 H 0.151 0.849 12 C -0.222 4.222 13 C -0.099 4.099 14 C -0.145 4.145 15 C 0.047 3.953 16 N -0.311 5.311 17 C -0.384 4.384 18 H 0.081 0.919 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.023 3.977 26 C -0.136 4.136 27 C -0.035 4.035 28 C -0.136 4.136 29 N -0.122 5.122 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.198 0.802 38 H 0.230 0.770 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.082 0.918 50 H 0.098 0.902 51 H 0.115 0.885 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.148 -18.783 12.843 26.794 hybrid contribution -0.037 1.534 -0.798 1.730 sum -14.185 -17.249 12.045 25.373 Atomic orbital electron populations 1.21717 0.94215 1.02667 1.02260 1.21802 0.96545 0.95124 1.03965 1.21961 0.73413 0.99452 1.04366 1.48468 1.06780 1.37760 1.20517 1.23114 0.90544 0.96502 0.95074 1.20265 0.92446 1.13710 1.03635 1.17190 0.87644 0.77404 0.79360 1.90724 1.26870 1.58302 1.66257 1.45226 1.08963 1.51834 1.28336 1.21872 0.89814 1.01333 0.90182 0.84938 1.23528 1.03210 1.01190 0.94251 1.21945 0.98475 0.88477 1.00999 1.21878 0.93408 0.97013 1.02220 1.20764 0.88618 0.94655 0.91247 1.43961 0.99747 1.01946 1.85483 1.19127 1.07110 0.81611 1.30547 0.91905 1.25045 1.00015 0.97923 0.96597 1.70020 1.20064 1.35204 1.29198 0.86395 0.77224 0.85358 0.77941 1.21016 1.21644 1.20925 1.20834 0.91314 0.92222 0.93314 1.21616 0.92549 0.98004 1.01396 1.22476 0.93374 0.94289 0.93386 1.20345 0.92695 1.00560 0.99963 1.77149 1.01184 1.20193 1.13720 0.92203 0.92281 0.91835 0.91288 0.90244 0.89248 0.88204 0.80171 0.76960 0.88364 0.89197 0.92127 0.92971 0.96366 0.89201 0.93562 0.96350 0.92836 0.93842 0.91787 0.90212 0.88530 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.91 37.16 0.37 -0.18 16 2 C -0.14 -0.73 6.11 -26.73 -0.16 -0.90 16 3 C 0.13 0.71 6.49 -4.04 -0.03 0.68 16 4 N -0.36 -3.28 3.65 -60.81 -0.22 -3.51 16 5 C 0.10 0.90 10.95 -16.56 -0.18 0.72 16 6 C -0.29 -3.47 6.13 -105.07 -0.64 -4.12 16 7 C 0.60 8.43 7.81 -12.52 -0.10 8.33 16 8 O -0.54 -9.30 14.48 5.27 0.08 -9.22 16 9 N -0.69 -8.86 5.33 -54.96 -0.29 -9.16 16 10 C 0.07 1.08 6.14 -68.01 -0.42 0.66 16 11 H 0.13 2.12 7.40 -51.93 -0.38 1.73 16 12 C -0.18 -2.63 9.86 -26.80 -0.26 -2.89 16 13 C -0.10 -1.58 1.94 -154.49 -0.30 -1.88 16 14 C -0.11 -2.01 5.83 -26.46 -0.15 -2.16 16 15 C 0.17 4.05 5.40 -3.68 -0.02 4.03 16 16 N -0.59 -14.41 2.94 -172.27 -0.51 -14.91 16 17 C -0.25 -6.86 9.54 -15.06 -0.14 -7.01 16 18 H 0.06 1.67 7.89 -52.48 -0.41 1.25 16 19 C 0.00 0.08 4.88 -17.43 -0.09 0.00 16 20 N -0.90 -25.88 11.23 55.49 0.62 -25.25 16 21 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.15 3.00 6.52 -3.67 -0.02 2.97 16 26 C -0.10 -1.55 5.37 -26.46 -0.14 -1.69 16 27 C 0.13 1.64 7.26 -82.02 -0.60 1.04 16 28 C -0.08 -0.83 9.92 36.01 0.36 -0.47 16 29 N -0.30 -3.55 12.33 33.90 0.42 -3.13 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.30 8.06 -51.93 -0.42 -0.11 16 37 H 0.18 0.97 7.46 -52.49 -0.39 0.58 16 38 H 0.40 4.08 6.04 -40.82 -0.25 3.84 16 39 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.09 2.37 5.93 -51.93 -0.31 2.07 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.05 1.05 7.92 -51.93 -0.41 0.63 16 48 H 0.04 0.55 6.75 -51.93 -0.35 0.20 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.10 1.16 6.55 -51.93 -0.34 0.82 16 52 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 415.34 15.07 6.26 6.26 Total: -1.00 -33.09 415.34 -9.95 -43.04 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -8.74 Total: 2.28 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -2.53 Total: -2.87 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.02 Total: -55.96 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.09 -9.95 -43.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016894966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.162 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds