Wall clock time and date at job start Wed Apr 1 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 N 1.46500 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.34261 * 125.75331 * 124.99973 * 4 3 2 6 6 C 1.38047 * 107.41573 * 180.02562 * 5 4 3 7 7 C 1.47422 * 126.41593 * 179.97438 * 6 5 4 8 8 O 1.21608 * 120.00075 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00162 * 0.02562 * 7 6 5 10 10 C 1.46493 * 120.00167 * 180.02562 * 9 7 6 11 11 H 1.09004 * 115.55670 * 350.67955 * 10 9 7 12 12 C 1.53029 * 117.50531 * 136.41750 * 10 9 7 13 13 C 1.52816 * 117.50003 * 205.00054 * 10 9 7 14 14 C 1.53187 * 117.71684 * 144.90047 * 13 10 9 15 15 C 1.53345 * 108.77445 * 158.88909 * 14 13 10 16 16 N 1.46830 * 108.81788 * 51.30551 * 15 14 13 17 17 C 1.36936 * 120.38559 * 123.12676 * 16 15 14 18 18 H 1.08005 * 120.00232 * 208.88655 * 17 16 15 19 19 C 1.38810 * 119.99845 * 28.88397 * 17 16 15 20 20 N 1.31615 * 120.00360 * 17.85543 * 19 17 16 21 21 Si 1.86803 * 119.99788 * 197.85586 * 19 17 16 22 22 H 1.48494 * 109.47369 * 59.99834 * 21 19 17 23 23 H 1.48496 * 109.46924 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47101 * 299.99746 * 21 19 17 25 25 C 1.46855 * 119.23496 * 303.10266 * 16 15 14 26 26 C 1.53184 * 117.71893 * 0.13887 * 13 10 9 27 27 C 1.41290 * 107.17027 * 359.97438 * 6 5 4 28 28 C 1.50704 * 125.98826 * 179.97438 * 27 6 5 29 29 N 1.30452 * 108.02194 * 0.23497 * 27 6 5 30 30 H 1.08999 * 109.47320 * 300.00505 * 1 2 3 31 31 H 1.09007 * 109.46992 * 60.00498 * 1 2 3 32 32 H 1.09003 * 109.47413 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47320 * 239.99495 * 2 1 3 34 34 H 1.09001 * 109.46836 * 119.99954 * 2 1 3 35 35 H 1.08999 * 109.47436 * 59.99566 * 3 2 1 36 36 H 1.09007 * 109.46781 * 299.99631 * 3 2 1 37 37 H 1.07999 * 126.29387 * 359.97438 * 5 4 3 38 38 H 0.97003 * 119.99740 * 0.02562 * 9 7 6 39 39 H 1.09002 * 117.50492 * 214.95882 * 12 10 9 40 40 H 1.09007 * 117.50055 * 359.97438 * 12 10 9 41 41 H 1.09006 * 109.58899 * 278.67437 * 14 13 10 42 42 H 1.09002 * 109.58883 * 39.09782 * 14 13 10 43 43 H 1.09002 * 109.57639 * 291.50592 * 15 14 13 44 44 H 1.09005 * 109.58188 * 171.11041 * 15 14 13 45 45 H 0.97000 * 120.00387 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.57975 * 297.10456 * 25 16 15 47 47 H 1.08998 * 109.57934 * 176.70287 * 25 16 15 48 48 H 1.09004 * 109.58496 * 320.90696 * 26 13 10 49 49 H 1.09001 * 109.58865 * 81.33165 * 26 13 10 50 50 H 1.09006 * 109.46554 * 90.00625 * 28 27 6 51 51 H 1.08992 * 109.47073 * 330.00837 * 28 27 6 52 52 H 1.08999 * 109.47046 * 210.00083 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2899 2.0673 -0.8917 6 6 5.6001 1.8177 -0.5357 7 6 6.8043 2.3050 -1.2326 8 8 7.9085 2.0122 -0.8155 9 7 6.6816 3.0750 -2.3320 10 6 7.8783 3.5587 -3.0248 11 1 8.8223 3.3893 -2.5068 12 6 7.8876 3.4867 -4.5534 13 6 7.7466 4.8371 -3.8516 14 6 8.9476 5.7873 -3.8904 15 6 8.8305 6.6802 -5.1316 16 7 7.4941 7.2879 -5.1536 17 6 7.3528 8.6494 -5.1918 18 1 6.4808 9.1143 -4.7560 19 6 8.3305 9.4320 -5.7906 20 7 9.1976 8.8848 -6.6158 21 14 8.4154 11.2620 -5.4252 22 1 8.6330 11.4668 -3.9707 23 1 9.5393 11.8666 -6.1844 24 1 7.1409 11.9074 -5.8308 25 6 6.3105 6.4187 -5.1346 26 6 6.3764 5.5207 -3.8933 27 6 5.5708 1.0079 0.6217 28 6 6.7716 0.4851 1.3674 29 7 4.3222 0.7874 0.9286 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 3.9573 2.6561 -1.7337 38 1 5.8008 3.3088 -2.6644 39 1 8.8378 3.2696 -5.0413 40 1 7.0033 3.0789 -5.0434 41 1 8.9524 6.4070 -2.9936 42 1 9.8699 5.2087 -3.9421 43 1 8.9730 6.0783 -6.0292 44 1 9.5874 7.4635 -5.0908 45 1 9.8805 9.4318 -7.0345 46 1 6.2968 5.8006 -6.0323 47 1 5.4090 7.0300 -5.0958 48 1 5.5926 4.7651 -3.9468 49 1 6.2426 6.1261 -2.9968 50 1 7.0617 1.2011 2.1364 51 1 7.5985 0.3444 0.6714 52 1 6.5230 -0.4682 1.8337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016894966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:09 Heat of formation + Delta-G solvation = 53.564402 kcal Electronic energy + Delta-G solvation = -30289.008813 eV Core-core repulsion = 26290.203422 eV Total energy + Delta-G solvation = -3998.805391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.46877 -40.82861 -39.42898 -37.08957 -36.41511 -34.54538 -33.52747 -33.32148 -31.71928 -31.12929 -29.83132 -29.74163 -26.77218 -26.19578 -24.27045 -23.96683 -23.00906 -22.68073 -22.29215 -21.21701 -20.57325 -19.75265 -18.80162 -18.16429 -17.35301 -17.01675 -16.77784 -16.60665 -15.96367 -15.71366 -15.55570 -15.30011 -15.24466 -14.99588 -14.85123 -14.71195 -14.37994 -14.12351 -13.98727 -13.75282 -13.61412 -13.26922 -13.07715 -13.05497 -13.01272 -12.84455 -12.80145 -12.54133 -12.49936 -12.27932 -12.25509 -11.99645 -11.95345 -11.75116 -11.61895 -11.34594 -11.22522 -10.93690 -10.63376 -10.44011 -10.36741 -9.82794 -9.45735 -8.59121 -7.83804 -5.29662 0.51010 1.09769 1.39168 1.47249 1.50324 1.56445 2.17737 2.38255 2.53255 3.04530 3.29716 3.31281 3.68627 3.69049 3.85350 3.89249 3.89813 3.93436 4.03673 4.07184 4.18081 4.24328 4.30326 4.45619 4.51205 4.55012 4.57229 4.68717 4.75527 4.77282 4.79356 4.88721 4.94278 4.96749 4.98716 5.05055 5.06877 5.12793 5.13282 5.18059 5.21220 5.35915 5.36655 5.42473 5.52837 5.56532 5.61963 5.68442 5.80917 5.90441 6.43642 6.50952 6.68732 7.18930 7.33261 7.92140 8.42690 9.20954 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.002171 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.039890 B =12892.009882 C =13935.871082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.120 3.880 4 N -0.353 5.353 5 C 0.122 3.878 6 C -0.317 4.317 7 C 0.596 3.404 8 O -0.582 6.582 9 N -0.683 5.683 10 C 0.089 3.911 11 H 0.117 0.883 12 C -0.169 4.169 13 C -0.115 4.115 14 C -0.095 4.095 15 C 0.181 3.819 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.066 0.934 19 C -0.052 4.052 20 N -0.933 5.933 21 Si 0.963 3.037 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.274 1.274 25 C 0.145 3.855 26 C -0.082 4.082 27 C 0.114 3.886 28 C -0.074 4.074 29 N -0.323 5.323 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.225 0.775 38 H 0.411 0.589 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.000 1.000 44 H 0.052 0.948 45 H 0.249 0.751 46 H 0.018 0.982 47 H 0.056 0.944 48 H 0.089 0.911 49 H 0.056 0.944 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.140 -18.697 12.094 28.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.001 3.999 4 N -0.129 5.129 5 C -0.031 4.031 6 C -0.332 4.332 7 C 0.386 3.614 8 O -0.463 6.463 9 N -0.333 5.333 10 C -0.017 4.017 11 H 0.135 0.865 12 C -0.207 4.207 13 C -0.116 4.116 14 C -0.135 4.135 15 C 0.055 3.945 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.083 0.917 19 C -0.247 4.247 20 N -0.579 5.579 21 Si 0.791 3.209 22 H -0.207 1.207 23 H -0.222 1.222 24 H -0.199 1.199 25 C 0.019 3.981 26 C -0.121 4.121 27 C -0.053 4.053 28 C -0.133 4.133 29 N -0.145 5.145 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.153 0.847 37 H 0.241 0.759 38 H 0.248 0.752 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.018 0.982 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.074 0.926 48 H 0.107 0.893 49 H 0.075 0.925 50 H 0.099 0.901 51 H 0.099 0.901 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.266 -19.408 13.128 29.105 hybrid contribution 0.812 1.668 -0.875 2.051 sum -16.454 -17.740 12.253 27.121 Atomic orbital electron populations 1.21688 0.92728 1.02877 1.03108 1.21727 0.97713 0.94934 1.02558 1.22372 0.71252 0.99806 1.06505 1.48814 1.07962 1.36556 1.19613 1.23673 0.89248 0.95018 0.95144 1.20183 0.93020 1.15577 1.04408 1.17477 0.87775 0.76939 0.79234 1.90708 1.28509 1.59781 1.67309 1.45046 1.09024 1.51345 1.27853 1.21575 0.90140 0.99460 0.90544 0.86485 1.23612 1.04258 0.98847 0.94030 1.21798 0.97296 0.88817 1.03701 1.21636 0.95827 0.96923 0.99081 1.20511 0.87646 0.93816 0.92490 1.44234 1.01299 1.01888 1.85766 1.19465 1.06923 0.83234 1.29507 0.91681 1.25774 1.00188 1.01809 0.96928 1.70170 1.20804 1.36355 1.30583 0.85413 0.77136 0.80827 0.77521 1.20727 1.22214 1.19943 1.21022 0.89596 0.92241 0.95222 1.21450 0.93735 0.98168 0.98718 1.22692 0.93852 0.94755 0.93959 1.20290 0.92114 1.01266 0.99583 1.77104 1.01227 1.21171 1.15032 0.91773 0.90969 0.92026 0.91973 0.92416 0.88502 0.84671 0.75896 0.75186 0.88394 0.87019 0.93517 0.91701 0.98226 0.92994 0.94192 0.96375 0.92591 0.89314 0.92550 0.90123 0.90092 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 71.98 0.71 0.02 16 2 C -0.13 -1.12 6.11 30.59 0.19 -0.94 16 3 C 0.12 0.89 6.49 86.38 0.56 1.46 16 4 N -0.35 -5.44 3.65 -346.30 -1.26 -6.70 16 5 C 0.12 1.76 10.95 84.28 0.92 2.68 16 6 C -0.32 -7.10 6.13 -20.15 -0.12 -7.22 16 7 C 0.60 15.93 7.81 86.66 0.68 16.61 16 8 O -0.58 -19.88 14.48 -4.05 -0.06 -19.94 16 9 N -0.68 -15.36 5.33 -446.05 -2.38 -17.73 16 10 C 0.09 2.41 6.14 44.94 0.28 2.69 16 11 H 0.12 3.63 7.40 -2.38 -0.02 3.61 16 12 C -0.17 -4.38 9.86 30.55 0.30 -4.07 16 13 C -0.11 -3.50 1.94 -52.17 -0.10 -3.60 16 14 C -0.10 -3.62 5.83 30.77 0.18 -3.44 16 15 C 0.18 8.69 5.40 86.43 0.47 9.15 16 16 N -0.61 -29.85 2.94 -698.93 -2.05 -31.91 16 17 C -0.26 -14.17 9.54 84.03 0.80 -13.36 16 18 H 0.07 3.43 7.89 -2.91 -0.02 3.40 16 19 C -0.05 -2.87 4.88 84.86 0.41 -2.46 16 20 N -0.93 -55.19 11.23 21.65 0.24 -54.95 16 21 Si 0.96 44.80 29.59 68.60 2.03 46.83 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 25 C 0.14 5.53 6.52 86.43 0.56 6.10 16 26 C -0.08 -2.38 5.37 30.77 0.17 -2.21 16 27 C 0.11 2.75 7.26 43.52 0.32 3.07 16 28 C -0.07 -1.62 9.92 71.24 0.71 -0.92 16 29 N -0.32 -7.21 12.33 -46.67 -0.58 -7.79 16 30 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 32 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.14 0.10 8.06 -2.38 -0.02 0.08 16 37 H 0.22 1.04 7.46 -2.91 -0.02 1.02 16 38 H 0.41 6.52 6.04 -92.71 -0.56 5.96 16 39 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 41 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 43 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.05 2.86 5.93 -2.38 -0.01 2.85 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.06 2.08 7.92 -2.39 -0.02 2.06 16 48 H 0.09 1.79 6.75 -2.39 -0.02 1.77 16 49 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 51 H 0.08 2.02 6.55 -2.39 -0.02 2.00 16 52 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -75.19 415.34 3.32 -71.87 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.35 Total: 16.77 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 7.03 Total: 3.55 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -6.03 Total: -119.08 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.06 Total: -19.94 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -75.19 3.32 -71.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016894966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.431 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds