Wall clock time and date at job start Wed Apr 1 2020 04:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47067 * 2 1 4 4 N 1.46499 * 109.47178 * 119.99732 * 2 1 3 5 5 N 1.28444 * 125.19249 * 297.32469 * 4 2 1 6 6 C 1.30867 * 110.92682 * 179.73702 * 5 4 2 7 7 C 1.39669 * 107.86233 * 359.97438 * 6 5 4 8 8 C 1.36607 * 125.18953 * 117.02184 * 4 2 1 9 9 C 1.47166 * 126.88237 * 0.26083 * 8 4 2 10 10 O 1.21629 * 119.99666 * 25.55918 * 9 8 4 11 11 N 1.34777 * 119.99964 * 205.55777 * 9 8 4 12 12 C 1.46947 * 120.84687 * 6.79664 * 11 9 8 13 13 C 1.53143 * 109.02007 * 234.00680 * 12 11 9 14 14 C 1.53119 * 109.48080 * 305.92473 * 13 12 11 15 15 C 1.52859 * 109.34446 * 60.64469 * 14 13 12 16 16 H 1.09007 * 109.25488 * 57.51640 * 15 14 13 17 17 C 1.52772 * 110.20548 * 177.56450 * 15 14 13 18 18 N 1.46223 * 109.95870 * 66.80240 * 17 15 14 19 19 C 1.36936 * 120.97647 * 233.70734 * 18 17 15 20 20 H 1.08000 * 120.00214 * 146.25987 * 19 18 17 21 21 C 1.38814 * 119.99644 * 326.26470 * 19 18 17 22 22 N 1.31618 * 120.00089 * 341.99408 * 21 19 18 23 23 Si 1.86799 * 119.99852 * 162.00342 * 21 19 18 24 24 H 1.48494 * 109.47578 * 59.99405 * 23 21 19 25 25 H 1.48496 * 109.47021 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47058 * 299.99264 * 23 21 19 27 27 C 1.46974 * 118.25524 * 53.47662 * 18 17 15 28 28 C 1.53102 * 108.61639 * 305.91837 * 27 18 17 29 29 C 1.47303 * 120.84678 * 186.51187 * 11 9 8 30 30 H 1.09004 * 110.07341 * 4.92656 * 29 11 9 31 31 H 1.08993 * 109.47345 * 299.99614 * 1 2 3 32 32 H 1.08997 * 109.47326 * 60.00229 * 1 2 3 33 33 H 1.09008 * 109.46755 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47380 * 240.00048 * 2 1 3 35 35 H 1.09001 * 109.46981 * 59.99804 * 3 2 1 36 36 H 1.08999 * 109.47124 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.47218 * 300.00438 * 3 2 1 38 38 H 1.07997 * 126.06853 * 180.02562 * 6 5 4 39 39 H 1.08005 * 127.31975 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.54738 * 353.86827 * 12 11 9 41 41 H 1.09001 * 109.54699 * 114.14202 * 12 11 9 42 42 H 1.08994 * 109.46875 * 65.92903 * 13 12 11 43 43 H 1.08997 * 109.47014 * 185.93021 * 13 12 11 44 44 H 1.08998 * 109.48955 * 180.60641 * 14 13 12 45 45 H 1.08998 * 109.49377 * 300.65808 * 14 13 12 46 46 H 1.08996 * 109.52065 * 187.26654 * 17 15 14 47 47 H 1.09000 * 109.51780 * 307.43565 * 17 15 14 48 48 H 0.96999 * 119.99900 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.61162 * 186.18049 * 27 18 17 50 50 H 1.08996 * 109.75292 * 65.73900 * 27 18 17 51 51 H 1.09002 * 109.45518 * 295.31028 * 28 27 18 52 52 H 1.09001 * 109.44941 * 175.37475 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 7 1.8108 -0.3121 2.4060 6 6 2.3685 -1.1365 3.2557 7 6 2.9971 -2.1462 2.5235 8 6 2.7590 -1.8384 1.1953 9 6 3.2122 -2.5962 0.0180 10 8 3.3568 -2.0319 -1.0497 11 7 3.4672 -3.9155 0.1230 12 6 3.1591 -4.6463 1.3600 13 6 4.4200 -5.3724 1.8380 14 6 4.9670 -6.2452 0.7051 15 6 5.3248 -5.3599 -0.4886 16 1 6.0488 -4.6080 -0.1743 17 6 5.9294 -6.2041 -1.6092 18 7 4.9180 -7.1090 -2.1536 19 6 5.1476 -8.4567 -2.2330 20 1 4.3322 -9.1522 -2.0997 21 6 6.4285 -8.9288 -2.4847 22 7 7.3387 -8.1242 -2.9913 23 14 6.8602 -10.7061 -2.1049 24 1 5.9838 -11.6081 -2.8943 25 1 8.2793 -10.9580 -2.4624 26 1 6.6608 -10.9652 -0.6563 27 6 3.6441 -6.5352 -2.6096 28 6 3.0422 -5.7120 -1.4677 29 6 4.0560 -4.6628 -1.0016 30 1 4.3049 -3.9807 -1.8146 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 2.3458 -1.0516 4.3321 39 1 3.5514 -2.9881 2.9113 40 1 2.8301 -3.9442 2.1261 41 1 2.3705 -5.3736 1.1671 42 1 5.1730 -4.6398 2.1282 43 1 4.1749 -6.0005 2.6944 44 1 5.8583 -6.7703 1.0485 45 1 4.2100 -6.9703 0.4066 46 1 6.2978 -5.5502 -2.3996 47 1 6.7531 -6.7983 -1.2136 48 1 8.2336 -8.4543 -3.1675 49 1 2.9587 -7.3373 -2.8832 50 1 3.8176 -5.8920 -3.4723 51 1 2.7941 -6.3716 -0.6362 52 1 2.1383 -5.2131 -1.8172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021598768.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:02 Heat of formation + Delta-G solvation = 75.195657 kcal Electronic energy + Delta-G solvation = -32538.757319 eV Core-core repulsion = 28540.889929 eV Total energy + Delta-G solvation = -3997.867390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.75384 -40.22971 -38.01922 -36.15958 -35.46202 -32.86145 -32.60886 -31.11600 -30.54896 -30.05536 -29.37371 -27.60391 -25.69741 -25.34470 -23.48254 -22.89185 -22.42918 -21.87118 -21.58605 -20.59111 -19.03470 -17.92114 -17.34440 -16.65599 -16.60154 -15.95069 -15.53334 -15.38116 -15.01241 -14.76995 -14.50216 -14.42624 -14.11633 -13.59233 -13.39607 -13.34474 -13.25512 -13.00285 -12.73129 -12.60254 -12.53752 -12.42322 -12.29306 -12.09880 -11.67609 -11.59793 -11.46401 -11.20082 -11.04039 -10.77375 -10.69506 -10.62494 -10.47037 -10.17782 -10.12313 -10.01066 -9.85797 -9.70058 -9.44541 -9.30898 -9.02685 -8.51415 -8.31944 -6.62725 -5.83016 -3.29959 1.23987 2.19655 2.49813 3.08874 3.13534 3.35659 3.42094 3.42679 4.24868 4.34377 4.46487 4.60419 4.71134 4.91655 4.94356 5.03260 5.14387 5.19233 5.23667 5.29058 5.33381 5.37377 5.41438 5.41947 5.46875 5.52326 5.55906 5.58555 5.71925 5.75266 5.82665 5.85197 5.87080 6.02905 6.09733 6.18169 6.29138 6.34736 6.40026 6.43307 6.48739 6.64815 6.65548 6.76225 6.84674 6.92626 7.00086 7.23698 7.45382 7.55728 7.78694 7.94943 8.14144 8.45138 9.18681 9.80222 10.41630 11.25182 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.002837 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.030895 B = 9865.788930 C =10438.131596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 C -0.156 4.156 4 N -0.251 5.251 5 N -0.279 5.279 6 C -0.006 4.006 7 C -0.204 4.204 8 C -0.026 4.026 9 C 0.586 3.414 10 O -0.545 6.545 11 N -0.585 5.585 12 C 0.074 3.926 13 C -0.135 4.135 14 C -0.104 4.104 15 C -0.115 4.115 16 H 0.058 0.942 17 C 0.180 3.820 18 N -0.584 5.584 19 C -0.259 4.259 20 H 0.062 0.938 21 C 0.012 3.988 22 N -0.896 5.896 23 Si 0.899 3.101 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.146 3.854 28 C -0.140 4.140 29 C 0.157 3.843 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.184 0.816 39 H 0.171 0.829 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.021 0.979 47 H 0.079 0.921 48 H 0.255 0.745 49 H 0.057 0.943 50 H 0.020 0.980 51 H 0.066 0.934 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.149 13.911 11.586 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 C -0.214 4.214 4 N -0.039 5.039 5 N -0.111 5.111 6 C -0.182 4.182 7 C -0.232 4.232 8 C -0.155 4.155 9 C 0.372 3.628 10 O -0.424 6.424 11 N -0.316 5.316 12 C -0.048 4.048 13 C -0.173 4.173 14 C -0.142 4.142 15 C -0.136 4.136 16 H 0.077 0.923 17 C 0.053 3.947 18 N -0.306 5.306 19 C -0.388 4.388 20 H 0.080 0.920 21 C -0.189 4.189 22 N -0.538 5.538 23 Si 0.728 3.272 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.019 3.981 28 C -0.180 4.180 29 C 0.056 3.944 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.201 0.799 39 H 0.188 0.812 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.039 0.961 47 H 0.097 0.903 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.038 0.962 51 H 0.085 0.915 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.574 15.209 10.739 21.923 hybrid contribution 0.884 -1.693 0.391 1.949 sum -10.690 13.516 11.131 20.515 Atomic orbital electron populations 1.22143 0.92914 1.03118 1.03599 1.21965 0.95720 0.94756 0.84461 1.22070 1.02157 0.93729 1.03416 1.45981 1.35707 1.16772 1.05487 1.73094 1.22568 1.25691 0.89774 1.23574 1.01088 0.93699 0.99856 1.22483 1.07117 1.02800 0.90823 1.21565 1.04840 0.93017 0.96056 1.16994 0.77926 0.81951 0.85927 1.90753 1.54050 1.69011 1.28593 1.48257 1.60649 1.06539 1.16116 1.22520 0.98142 0.97203 0.86963 1.21966 0.96952 0.99297 0.99108 1.21442 1.01681 0.97547 0.93515 1.22129 0.95525 0.97777 0.98187 0.92310 1.20478 0.91844 0.91214 0.91138 1.43763 1.12944 1.03732 1.70159 1.18999 0.94200 0.81764 1.43864 0.92030 1.25160 0.98115 0.97391 0.98191 1.70042 1.04240 1.35497 1.44046 0.86446 0.77235 0.85080 0.78432 1.20812 1.21672 1.20912 1.20883 0.89350 0.95158 0.92699 1.22392 0.97179 0.97522 1.00874 1.21568 0.93185 0.92319 0.87375 0.88614 0.91128 0.90174 0.92027 0.85384 0.91165 0.91809 0.90283 0.79851 0.81153 0.87500 0.91285 0.92017 0.91090 0.91981 0.90462 0.96056 0.90256 0.93514 0.92446 0.96202 0.91538 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.41 37.16 0.35 -1.07 16 2 C 0.13 1.45 3.53 -67.93 -0.24 1.21 16 3 C -0.16 -1.45 9.33 37.16 0.35 -1.11 16 4 N -0.25 -3.20 3.09 -50.69 -0.16 -3.36 16 5 N -0.28 -3.41 11.56 30.59 0.35 -3.06 16 6 C -0.01 -0.07 12.03 -17.43 -0.21 -0.27 16 7 C -0.20 -2.25 8.77 -38.99 -0.34 -2.59 16 8 C -0.03 -0.35 6.56 -82.06 -0.54 -0.89 16 9 C 0.59 9.16 7.54 -12.64 -0.10 9.07 16 10 O -0.55 -9.93 14.32 5.25 0.08 -9.85 16 11 N -0.58 -8.67 2.65 -165.97 -0.44 -9.11 16 12 C 0.07 0.89 5.35 -3.72 -0.02 0.87 16 13 C -0.14 -1.64 5.92 -26.60 -0.16 -1.80 16 14 C -0.10 -1.68 4.86 -26.74 -0.13 -1.81 16 15 C -0.12 -2.08 2.52 -90.51 -0.23 -2.31 16 16 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 17 C 0.18 4.08 4.65 -4.31 -0.02 4.06 16 18 N -0.58 -13.86 2.61 -173.16 -0.45 -14.31 16 19 C -0.26 -6.78 9.52 -15.06 -0.14 -6.92 16 20 H 0.06 1.60 7.89 -52.49 -0.41 1.18 16 21 C 0.01 0.31 4.84 -17.43 -0.08 0.23 16 22 N -0.90 -25.42 11.72 55.49 0.65 -24.77 16 23 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.15 2.99 6.51 -3.73 -0.02 2.96 16 28 C -0.14 -2.40 5.01 -26.59 -0.13 -2.53 16 29 C 0.16 2.70 2.64 -67.11 -0.18 2.53 16 30 H 0.10 1.86 7.10 -51.93 -0.37 1.49 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.13 1.64 5.71 -51.93 -0.30 1.34 16 35 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.17 1.55 5.94 -52.48 -0.31 1.23 16 40 H 0.11 1.09 3.13 -51.93 -0.16 0.93 16 41 H 0.07 0.83 7.23 -51.93 -0.38 0.45 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.37 6.15 -51.93 -0.32 1.05 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.08 2.00 6.47 -51.93 -0.34 1.67 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 50 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 1.12 5.31 -51.93 -0.28 0.85 16 52 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -30.48 390.94 -9.28 -39.76 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -8.33 Total: 3.18 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.85 Total: -0.38 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.04 Total: -54.60 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.48 -9.28 -39.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021598768.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.952 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds