Wall clock time and date at job start Wed Apr 1 2020 04:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47067 * 2 1 4 4 N 1.46499 * 109.47178 * 119.99732 * 2 1 3 5 5 N 1.28444 * 125.19249 * 297.32469 * 4 2 1 6 6 C 1.30867 * 110.92682 * 179.73702 * 5 4 2 7 7 C 1.39669 * 107.86233 * 359.97438 * 6 5 4 8 8 C 1.36607 * 125.18953 * 117.02184 * 4 2 1 9 9 C 1.47166 * 126.88237 * 0.26083 * 8 4 2 10 10 O 1.21629 * 119.99666 * 25.55918 * 9 8 4 11 11 N 1.34777 * 119.99964 * 205.55777 * 9 8 4 12 12 C 1.46947 * 120.84687 * 6.79664 * 11 9 8 13 13 C 1.53143 * 109.02007 * 234.00680 * 12 11 9 14 14 C 1.53119 * 109.48080 * 305.92473 * 13 12 11 15 15 C 1.52859 * 109.34446 * 60.64469 * 14 13 12 16 16 H 1.09007 * 109.25488 * 57.51640 * 15 14 13 17 17 C 1.52772 * 110.20548 * 177.56450 * 15 14 13 18 18 N 1.46223 * 109.95870 * 66.80240 * 17 15 14 19 19 C 1.36936 * 120.97647 * 233.70734 * 18 17 15 20 20 H 1.08000 * 120.00214 * 146.25987 * 19 18 17 21 21 C 1.38814 * 119.99644 * 326.26470 * 19 18 17 22 22 N 1.31618 * 120.00089 * 341.99408 * 21 19 18 23 23 Si 1.86799 * 119.99852 * 162.00342 * 21 19 18 24 24 H 1.48494 * 109.47578 * 59.99405 * 23 21 19 25 25 H 1.48496 * 109.47021 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47058 * 299.99264 * 23 21 19 27 27 C 1.46974 * 118.25524 * 53.47662 * 18 17 15 28 28 C 1.53102 * 108.61639 * 305.91837 * 27 18 17 29 29 C 1.47303 * 120.84678 * 186.51187 * 11 9 8 30 30 H 1.09004 * 110.07341 * 4.92656 * 29 11 9 31 31 H 1.08993 * 109.47345 * 299.99614 * 1 2 3 32 32 H 1.08997 * 109.47326 * 60.00229 * 1 2 3 33 33 H 1.09008 * 109.46755 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47380 * 240.00048 * 2 1 3 35 35 H 1.09001 * 109.46981 * 59.99804 * 3 2 1 36 36 H 1.08999 * 109.47124 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.47218 * 300.00438 * 3 2 1 38 38 H 1.07997 * 126.06853 * 180.02562 * 6 5 4 39 39 H 1.08005 * 127.31975 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.54738 * 353.86827 * 12 11 9 41 41 H 1.09001 * 109.54699 * 114.14202 * 12 11 9 42 42 H 1.08994 * 109.46875 * 65.92903 * 13 12 11 43 43 H 1.08997 * 109.47014 * 185.93021 * 13 12 11 44 44 H 1.08998 * 109.48955 * 180.60641 * 14 13 12 45 45 H 1.08998 * 109.49377 * 300.65808 * 14 13 12 46 46 H 1.08996 * 109.52065 * 187.26654 * 17 15 14 47 47 H 1.09000 * 109.51780 * 307.43565 * 17 15 14 48 48 H 0.96999 * 119.99900 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.61162 * 186.18049 * 27 18 17 50 50 H 1.08996 * 109.75292 * 65.73900 * 27 18 17 51 51 H 1.09002 * 109.45518 * 295.31028 * 28 27 18 52 52 H 1.09001 * 109.44941 * 175.37475 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 7 1.8108 -0.3121 2.4060 6 6 2.3685 -1.1365 3.2557 7 6 2.9971 -2.1462 2.5235 8 6 2.7590 -1.8384 1.1953 9 6 3.2122 -2.5962 0.0180 10 8 3.3568 -2.0319 -1.0497 11 7 3.4672 -3.9155 0.1230 12 6 3.1591 -4.6463 1.3600 13 6 4.4200 -5.3724 1.8380 14 6 4.9670 -6.2452 0.7051 15 6 5.3248 -5.3599 -0.4886 16 1 6.0488 -4.6080 -0.1743 17 6 5.9294 -6.2041 -1.6092 18 7 4.9180 -7.1090 -2.1536 19 6 5.1476 -8.4567 -2.2330 20 1 4.3322 -9.1522 -2.0997 21 6 6.4285 -8.9288 -2.4847 22 7 7.3387 -8.1242 -2.9913 23 14 6.8602 -10.7061 -2.1049 24 1 5.9838 -11.6081 -2.8943 25 1 8.2793 -10.9580 -2.4624 26 1 6.6608 -10.9652 -0.6563 27 6 3.6441 -6.5352 -2.6096 28 6 3.0422 -5.7120 -1.4677 29 6 4.0560 -4.6628 -1.0016 30 1 4.3049 -3.9807 -1.8146 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 2.3458 -1.0516 4.3321 39 1 3.5514 -2.9881 2.9113 40 1 2.8301 -3.9442 2.1261 41 1 2.3705 -5.3736 1.1671 42 1 5.1730 -4.6398 2.1282 43 1 4.1749 -6.0005 2.6944 44 1 5.8583 -6.7703 1.0485 45 1 4.2100 -6.9703 0.4066 46 1 6.2978 -5.5502 -2.3996 47 1 6.7531 -6.7983 -1.2136 48 1 8.2336 -8.4543 -3.1675 49 1 2.9587 -7.3373 -2.8832 50 1 3.8176 -5.8920 -3.4723 51 1 2.7941 -6.3716 -0.6362 52 1 2.1383 -5.2131 -1.8172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021598768.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:01 Heat of formation + Delta-G solvation = 58.569630 kcal Electronic energy + Delta-G solvation = -32539.478277 eV Core-core repulsion = 28540.889929 eV Total energy + Delta-G solvation = -3998.588348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.65042 -41.52433 -39.41426 -37.36635 -36.58135 -34.50536 -33.98525 -32.50706 -31.52864 -31.26992 -30.92691 -28.31790 -27.30259 -26.78621 -24.74882 -23.96377 -23.70258 -23.23585 -22.82946 -21.86112 -20.05186 -19.48042 -18.56146 -18.21016 -17.74152 -16.97940 -16.91299 -16.59868 -16.28459 -15.99796 -15.83361 -15.61254 -15.25549 -15.16492 -14.86088 -14.71104 -14.26295 -14.07966 -14.03474 -13.89908 -13.66695 -13.52914 -13.22949 -13.19318 -13.08520 -12.90189 -12.59704 -12.52696 -12.44798 -12.34100 -12.22343 -12.01290 -11.90133 -11.77609 -11.63537 -11.42490 -11.27406 -11.12600 -10.91916 -10.52484 -10.23554 -9.93445 -9.58274 -8.61748 -7.87335 -5.37891 0.24118 1.26992 1.48816 1.50348 1.57302 1.66681 1.99716 2.02827 2.51896 3.28008 3.29066 3.45190 3.65446 3.77144 3.84021 3.93261 3.96270 3.97200 4.10033 4.12130 4.20201 4.21922 4.36860 4.41830 4.51298 4.56073 4.58975 4.60241 4.68284 4.70015 4.72991 4.80826 4.84301 4.89943 4.94274 4.98035 5.05234 5.09272 5.10636 5.12406 5.15507 5.21637 5.31034 5.42914 5.52599 5.56771 5.58328 5.68707 5.69105 5.79914 6.31729 6.41799 6.91842 7.11834 7.16125 7.84012 8.41515 9.18844 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.002837 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.030895 B = 9865.788930 C =10438.131596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.123 3.877 3 C -0.149 4.149 4 N -0.258 5.258 5 N -0.291 5.291 6 C -0.002 4.002 7 C -0.190 4.190 8 C -0.054 4.054 9 C 0.583 3.417 10 O -0.581 6.581 11 N -0.582 5.582 12 C 0.072 3.928 13 C -0.124 4.124 14 C -0.099 4.099 15 C -0.104 4.104 16 H 0.059 0.941 17 C 0.192 3.808 18 N -0.597 5.597 19 C -0.262 4.262 20 H 0.066 0.934 21 C -0.041 4.041 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.273 1.273 27 C 0.143 3.857 28 C -0.122 4.122 29 C 0.165 3.835 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.100 0.900 38 H 0.221 0.779 39 H 0.195 0.805 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.051 0.949 45 H 0.063 0.937 46 H -0.015 1.015 47 H 0.049 0.951 48 H 0.250 0.750 49 H 0.062 0.938 50 H 0.005 0.995 51 H 0.078 0.922 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 14.098 14.854 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.023 3.977 3 C -0.206 4.206 4 N -0.047 5.047 5 N -0.123 5.123 6 C -0.177 4.177 7 C -0.218 4.218 8 C -0.183 4.183 9 C 0.371 3.629 10 O -0.462 6.462 11 N -0.312 5.312 12 C -0.048 4.048 13 C -0.162 4.162 14 C -0.137 4.137 15 C -0.125 4.125 16 H 0.077 0.923 17 C 0.065 3.935 18 N -0.320 5.320 19 C -0.392 4.392 20 H 0.084 0.916 21 C -0.238 4.238 22 N -0.578 5.578 23 Si 0.791 3.209 24 H -0.201 1.201 25 H -0.224 1.224 26 H -0.199 1.199 27 C 0.017 3.983 28 C -0.162 4.162 29 C 0.062 3.938 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.119 0.881 38 H 0.237 0.763 39 H 0.212 0.788 40 H 0.150 0.850 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.122 0.878 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.003 0.997 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.080 0.920 50 H 0.023 0.977 51 H 0.096 0.904 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.581 15.398 14.038 24.871 hybrid contribution 1.480 -1.693 -0.666 2.345 sum -12.101 13.705 13.371 22.650 Atomic orbital electron populations 1.22093 0.91229 1.02797 1.04737 1.22056 0.97051 0.95112 0.83486 1.22031 1.00956 0.92988 1.04643 1.46151 1.35851 1.16698 1.05980 1.73105 1.23084 1.26314 0.89794 1.24224 0.99610 0.92579 1.01294 1.22791 1.06154 1.03316 0.89575 1.21420 1.06829 0.93985 0.96026 1.17326 0.77291 0.82011 0.86237 1.90737 1.55496 1.69750 1.30257 1.48164 1.60290 1.06471 1.16313 1.22781 0.98274 0.97641 0.86110 1.21918 0.96922 0.99144 0.98224 1.21358 1.00986 0.97425 0.93890 1.21901 0.95785 0.97398 0.97405 0.92261 1.20220 0.91324 0.90519 0.91459 1.43956 1.13919 1.03396 1.70680 1.19333 0.94343 0.82973 1.42583 0.91591 1.25910 0.98156 1.01185 0.98519 1.70203 1.04314 1.37339 1.45898 0.85417 0.76360 0.80552 0.78556 1.20131 1.22441 1.19877 1.20981 0.88254 0.95449 0.93640 1.22175 0.97172 0.97085 0.99775 1.21172 0.92967 0.91907 0.87718 0.91459 0.90840 0.88119 0.93013 0.87666 0.90788 0.93555 0.88150 0.76261 0.78829 0.85010 0.90551 0.91142 0.87787 0.93070 0.91848 0.99687 0.93273 0.94132 0.91964 0.97665 0.90352 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.41 71.98 0.68 -1.81 16 2 C 0.12 2.65 3.53 44.99 0.16 2.81 16 3 C -0.15 -2.65 9.33 71.98 0.67 -1.98 16 4 N -0.26 -6.22 3.09 -314.28 -0.97 -7.19 16 5 N -0.29 -6.38 11.56 -57.14 -0.66 -7.04 16 6 C 0.00 -0.03 12.03 85.18 1.02 1.00 16 7 C -0.19 -3.51 8.77 22.65 0.20 -3.31 16 8 C -0.05 -1.37 6.56 40.79 0.27 -1.10 16 9 C 0.58 17.96 7.54 86.59 0.65 18.61 16 10 O -0.58 -21.81 14.32 -4.12 -0.06 -21.87 16 11 N -0.58 -16.53 2.65 -797.27 -2.12 -18.65 16 12 C 0.07 1.49 5.35 86.34 0.46 1.95 16 13 C -0.12 -2.57 5.92 30.68 0.18 -2.38 16 14 C -0.10 -3.07 4.86 30.59 0.15 -2.92 16 15 C -0.10 -3.82 2.52 -10.72 -0.03 -3.85 16 16 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 17 C 0.19 9.16 4.65 86.36 0.40 9.56 16 18 N -0.60 -29.23 2.61 -701.76 -1.83 -31.05 16 19 C -0.26 -13.96 9.52 84.03 0.80 -13.16 16 20 H 0.07 3.41 7.89 -2.91 -0.02 3.38 16 21 C -0.04 -2.26 4.84 84.86 0.41 -1.85 16 22 N -0.93 -55.12 11.72 21.65 0.25 -54.87 16 23 Si 0.96 43.80 29.59 68.60 2.03 45.83 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 C 0.14 5.97 6.51 86.32 0.56 6.53 16 28 C -0.12 -4.14 5.01 30.68 0.15 -3.99 16 29 C 0.17 5.74 2.64 45.09 0.12 5.86 16 30 H 0.07 2.74 7.10 -2.38 -0.02 2.73 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.11 2.77 5.71 -2.39 -0.01 2.76 16 35 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 38 H 0.22 1.92 8.06 -2.91 -0.02 1.89 16 39 H 0.20 2.53 5.94 -2.91 -0.02 2.52 16 40 H 0.13 2.11 3.13 -2.39 -0.01 2.10 16 41 H 0.08 1.53 7.23 -2.39 -0.02 1.51 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 2.15 6.15 -2.39 -0.01 2.14 16 46 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 47 H 0.05 2.62 6.47 -2.39 -0.02 2.61 16 48 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 49 H 0.06 2.50 7.94 -2.39 -0.02 2.48 16 50 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 51 H 0.08 2.50 5.31 -2.39 -0.01 2.49 16 52 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -69.89 390.94 4.43 -65.46 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.92 Total: 19.39 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.86 Total: 9.98 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -5.32 Total: -118.80 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.87 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -69.89 4.43 -65.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021598768.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.030 kcal (2) G-P(sol) polarization free energy of solvation -69.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds