Wall clock time and date at job start Wed Apr 1 2020 04:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46989 * 2 1 4 4 N 1.46497 * 109.47392 * 119.99742 * 2 1 3 5 5 C 1.35845 * 126.13526 * 299.69738 * 4 2 1 6 6 N 1.30171 * 109.00541 * 179.81694 * 5 4 2 7 7 C 1.35764 * 108.86398 * 0.44002 * 6 5 4 8 8 C 1.47322 * 126.23696 * 179.70420 * 7 6 5 9 9 O 1.21618 * 120.00158 * 187.13951 * 8 7 6 10 10 N 1.34781 * 119.99902 * 7.13777 * 8 7 6 11 11 C 1.47063 * 120.84460 * 6.24660 * 10 8 7 12 12 C 1.53595 * 108.79762 * 126.52589 * 11 10 8 13 13 C 1.53140 * 109.53995 * 54.23791 * 12 11 10 14 14 C 1.52819 * 109.26439 * 299.01682 * 13 12 11 15 15 H 1.08999 * 109.46726 * 302.00849 * 14 13 12 16 16 C 1.53031 * 110.51883 * 181.59512 * 14 13 12 17 17 N 1.47067 * 108.50490 * 184.77071 * 16 14 13 18 18 C 1.36938 * 120.47112 * 233.21185 * 17 16 14 19 19 H 1.08004 * 119.99384 * 149.36720 * 18 17 16 20 20 C 1.38807 * 120.00580 * 329.37363 * 18 17 16 21 21 N 1.31617 * 119.99531 * 340.72152 * 20 18 17 22 22 Si 1.86800 * 120.00354 * 160.72297 * 20 18 17 23 23 H 1.48496 * 109.46883 * 60.00212 * 22 20 18 24 24 H 1.48498 * 109.46926 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47132 * 299.99978 * 22 20 18 26 26 C 1.46863 * 119.05634 * 53.19432 * 17 16 14 27 27 C 1.53312 * 109.10080 * 307.34339 * 26 17 16 28 28 C 1.46716 * 120.84240 * 186.52379 * 10 8 7 29 29 H 1.08998 * 109.52941 * 114.80030 * 28 10 8 30 30 C 1.35375 * 126.13663 * 119.99949 * 4 2 1 31 31 H 1.08999 * 109.47363 * 299.99669 * 1 2 3 32 32 H 1.09003 * 109.47212 * 60.00343 * 1 2 3 33 33 H 1.09005 * 109.47153 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47363 * 240.00330 * 2 1 3 35 35 H 1.08995 * 109.46973 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46863 * 299.99871 * 3 2 1 37 37 H 1.08999 * 109.46798 * 59.99984 * 3 2 1 38 38 H 1.07998 * 125.50062 * 359.97305 * 5 4 2 39 39 H 1.09004 * 109.54127 * 246.44685 * 11 10 8 40 40 H 1.08998 * 109.54493 * 6.70219 * 11 10 8 41 41 H 1.09007 * 109.59253 * 294.14903 * 12 11 10 42 42 H 1.09003 * 109.37525 * 174.19170 * 12 11 10 43 43 H 1.09004 * 109.50755 * 179.08281 * 13 12 11 44 44 H 1.08997 * 109.51245 * 58.95532 * 13 12 11 45 45 H 1.09007 * 109.71494 * 64.94383 * 16 14 13 46 46 H 1.09002 * 109.53451 * 304.49569 * 16 14 13 47 47 H 0.97002 * 119.99826 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.53532 * 187.45531 * 26 17 16 49 49 H 1.09001 * 109.59650 * 67.26803 * 26 17 16 50 50 H 1.09002 * 109.56123 * 294.26587 * 27 26 17 51 51 H 1.08997 * 109.55773 * 173.94203 * 27 26 17 52 52 H 1.08000 * 126.56432 * 359.97438 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7730 -0.3334 2.4836 6 7 2.3635 -1.1787 3.2780 7 6 3.0170 -2.1028 2.5281 8 6 3.8154 -3.2312 3.0377 9 8 4.4604 -3.9166 2.2674 10 7 3.8312 -3.5039 4.3575 11 6 2.9551 -2.7765 5.2882 12 6 2.1465 -3.7952 6.1053 13 6 3.1013 -4.7861 6.7775 14 6 3.8903 -5.5338 5.7033 15 1 3.1983 -6.0451 5.0341 16 6 4.8265 -6.5614 6.3431 17 7 5.6438 -7.1716 5.2836 18 6 5.6992 -8.5330 5.1465 19 1 5.8477 -8.9718 4.1709 20 6 5.5643 -9.3490 6.2613 21 7 5.7623 -8.8559 7.4654 22 14 5.1018 -11.1467 6.0525 23 1 6.1319 -11.8305 5.2300 24 1 5.0229 -11.7956 7.3859 25 1 3.7836 -11.2434 5.3756 26 6 6.3994 -6.3001 4.3745 27 6 5.4484 -5.2605 3.7702 28 6 4.7271 -4.5297 4.9030 29 1 5.4603 -4.0613 5.5596 30 6 2.7999 -1.7957 1.2168 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 1.1811 0.5137 2.7976 39 1 3.5611 -2.1662 5.9579 40 1 2.2756 -2.1370 4.7249 41 1 1.4673 -4.3359 5.4461 42 1 1.5708 -3.2715 6.8684 43 1 2.5279 -5.4989 7.3702 44 1 3.7910 -4.2449 7.4251 45 1 4.2399 -7.3316 6.8441 46 1 5.4736 -6.0645 7.0660 47 1 5.6684 -9.4262 8.2445 48 1 6.8390 -6.8991 3.5769 49 1 7.1901 -5.7929 4.9273 50 1 4.7173 -5.7604 3.1348 51 1 6.0189 -4.5442 3.1790 52 1 3.1786 -2.3320 0.3592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021637634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:43 Heat of formation + Delta-G solvation = 66.005031 kcal Electronic energy + Delta-G solvation = -31870.533758 eV Core-core repulsion = 27872.267833 eV Total energy + Delta-G solvation = -3998.265925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.48364 -39.99355 -37.43872 -36.44589 -35.54402 -32.65519 -32.53426 -31.38818 -30.17449 -29.69345 -28.80009 -27.96717 -25.33127 -25.08253 -23.61171 -22.88420 -22.25306 -21.82884 -20.75895 -19.85036 -19.24646 -18.68376 -17.41663 -16.56645 -16.01963 -15.85533 -15.71127 -14.99361 -14.82876 -14.65156 -14.34849 -14.19063 -13.97146 -13.85228 -13.60742 -13.41805 -13.27026 -13.02724 -12.91481 -12.74017 -12.46899 -12.21712 -12.10013 -11.99428 -11.94841 -11.80643 -11.36374 -11.05058 -10.90681 -10.73788 -10.59899 -10.49825 -10.20839 -10.08346 -9.93429 -9.90914 -9.61101 -9.54123 -9.20270 -8.77232 -8.72377 -8.31078 -7.94657 -6.47564 -5.67708 -3.09571 1.56056 2.29554 2.31846 3.43488 3.47176 3.51300 3.54143 3.73566 3.92988 4.24152 4.26493 4.35010 4.47897 4.60558 4.85276 4.91844 5.01454 5.04075 5.12103 5.23540 5.32187 5.38325 5.39009 5.47916 5.48057 5.52063 5.62826 5.73963 5.80406 5.86424 5.97474 6.03555 6.11245 6.23204 6.38014 6.43144 6.50105 6.58464 6.60537 6.65256 6.74345 6.79754 6.92767 6.96199 7.10380 7.24918 7.39192 7.46094 7.63173 7.71964 7.92921 7.95937 8.58954 8.64716 9.33698 9.97869 10.56925 11.40552 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.002554 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.999287 B =10960.525327 C =11416.152909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 C -0.164 4.164 4 N -0.452 5.452 5 C 0.182 3.818 6 N -0.460 5.460 7 C -0.052 4.052 8 C 0.595 3.405 9 O -0.537 6.537 10 N -0.590 5.590 11 C 0.082 3.918 12 C -0.131 4.131 13 C -0.113 4.113 14 C -0.118 4.118 15 H 0.065 0.935 16 C 0.186 3.814 17 N -0.592 5.592 18 C -0.251 4.251 19 H 0.062 0.938 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.898 3.102 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.139 3.861 27 C -0.114 4.114 28 C 0.157 3.843 29 H 0.063 0.937 30 C 0.029 3.971 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.205 0.795 39 H 0.056 0.944 40 H 0.136 0.864 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.080 0.920 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.054 0.946 49 H 0.013 0.987 50 H 0.070 0.930 51 H 0.070 0.930 52 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.557 24.050 -12.670 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 C -0.222 4.222 4 N -0.135 5.135 5 C -0.101 4.101 6 N -0.179 5.179 7 C -0.180 4.180 8 C 0.382 3.618 9 O -0.415 6.415 10 N -0.321 5.321 11 C -0.040 4.040 12 C -0.169 4.169 13 C -0.151 4.151 14 C -0.140 4.140 15 H 0.083 0.917 16 C 0.059 3.941 17 N -0.314 5.314 18 C -0.381 4.381 19 H 0.080 0.920 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.728 3.272 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.012 3.988 27 C -0.153 4.153 28 C 0.055 3.945 29 H 0.081 0.919 30 C -0.109 4.109 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.222 0.778 39 H 0.074 0.926 40 H 0.152 0.848 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.030 0.970 50 H 0.088 0.912 51 H 0.088 0.912 52 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -12.250 23.660 -12.160 29.287 hybrid contribution -0.350 -0.862 -0.670 1.147 sum -12.600 22.798 -12.830 29.036 Atomic orbital electron populations 1.22189 0.92855 1.03555 1.03569 1.21567 0.95730 0.94183 0.86300 1.22190 1.02424 0.93971 1.03569 1.45601 1.37872 1.21938 1.08098 1.25122 1.04114 1.01891 0.78932 1.70400 1.11654 1.04379 1.31469 1.20869 1.06737 1.00043 0.90395 1.17010 0.80469 0.82070 0.82230 1.90856 1.44070 1.49632 1.56958 1.48055 1.40010 1.37979 1.06053 1.22655 0.94079 0.94304 0.92991 1.21988 0.98177 0.97676 0.99062 1.21498 0.97929 0.97726 0.97926 1.22208 0.98228 0.96535 0.96988 0.91652 1.20658 0.91121 0.92932 0.89389 1.44054 1.50591 1.02008 1.34785 1.19118 1.45317 0.81368 0.92288 0.91988 1.25057 1.01098 0.97680 0.95638 1.70061 1.51473 1.35596 0.97331 0.86435 0.78820 0.85349 0.76593 1.20888 1.21729 1.21098 1.21141 0.92546 0.91953 0.93159 1.22436 0.99409 0.97897 0.95586 1.21305 0.90401 0.87030 0.95728 0.91928 1.22585 0.97749 0.90754 0.99779 0.91433 0.90252 0.91481 0.87859 0.91499 0.90254 0.91439 0.77823 0.92584 0.84759 0.92288 0.91643 0.91983 0.92268 0.90200 0.96291 0.93730 0.92732 0.96952 0.91163 0.91168 0.79717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 9.25 37.16 0.34 -0.17 16 2 C 0.12 0.52 3.57 -67.93 -0.24 0.28 16 3 C -0.16 -0.50 9.24 37.16 0.34 -0.15 16 4 N -0.45 -3.52 2.59 -111.25 -0.29 -3.81 16 5 C 0.18 1.55 11.52 -89.91 -1.04 0.52 16 6 N -0.46 -5.66 7.77 -11.03 -0.09 -5.75 16 7 C -0.05 -0.73 6.67 -83.09 -0.55 -1.29 16 8 C 0.59 10.54 7.61 -12.56 -0.10 10.44 16 9 O -0.54 -10.76 12.44 5.26 0.07 -10.69 16 10 N -0.59 -10.39 2.96 -166.34 -0.49 -10.89 16 11 C 0.08 1.23 6.14 -3.43 -0.02 1.21 16 12 C -0.13 -1.91 6.08 -26.35 -0.16 -2.07 16 13 C -0.11 -1.93 5.25 -26.75 -0.14 -2.07 16 14 C -0.12 -2.45 2.21 -90.56 -0.20 -2.65 16 15 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 16 C 0.19 4.63 4.63 -3.72 -0.02 4.61 16 17 N -0.59 -15.89 2.99 -172.28 -0.51 -16.40 16 18 C -0.25 -7.29 9.52 -15.06 -0.14 -7.43 16 19 H 0.06 1.79 7.90 -52.48 -0.41 1.37 16 20 C 0.00 0.12 4.82 -17.43 -0.08 0.03 16 21 N -0.90 -27.03 11.54 55.49 0.64 -26.39 16 22 Si 0.90 22.55 29.60 -169.99 -5.03 17.51 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 26 C 0.14 3.28 6.50 -3.68 -0.02 3.26 16 27 C -0.11 -2.44 3.79 -26.63 -0.10 -2.54 16 28 C 0.16 3.12 2.63 -67.73 -0.18 2.94 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 C 0.03 0.32 11.22 -16.64 -0.19 0.14 16 31 H 0.07 0.19 7.94 -51.93 -0.41 -0.22 16 32 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.10 0.36 8.07 -51.93 -0.42 -0.06 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.07 0.19 7.93 -51.93 -0.41 -0.23 16 38 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.14 1.90 4.10 -61.40 -0.25 1.65 16 41 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.08 2.20 6.35 -51.93 -0.33 1.87 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.05 1.28 7.93 -51.93 -0.41 0.87 16 49 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.07 1.65 7.10 -51.93 -0.37 1.28 16 51 H 0.07 1.48 6.51 -51.93 -0.34 1.14 16 52 H 0.19 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -34.53 395.97 -11.07 -45.60 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -8.83 Total: -0.20 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -2.50 Total: 5.05 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.74 Total: -63.24 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.53 -11.07 -45.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021637634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.610 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds