Wall clock time and date at job start Wed Apr 1 2020 04:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47215 * 2 1 4 4 N 1.46506 * 109.47288 * 120.00102 * 2 1 3 5 5 C 1.34943 * 126.03669 * 274.99767 * 4 2 1 6 6 C 1.35316 * 107.74407 * 179.97438 * 5 4 2 7 7 C 1.39870 * 107.92263 * 0.02562 * 6 5 4 8 8 C 1.50693 * 125.89957 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47552 * 124.99722 * 8 7 6 10 10 O 1.21286 * 119.99728 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00358 * 179.97438 * 9 8 7 12 12 C 1.49624 * 126.07138 * 359.97295 * 11 9 8 13 13 C 1.51517 * 102.49325 * 154.37560 * 12 11 9 14 14 H 1.09002 * 111.12360 * 288.14322 * 13 12 11 15 15 C 1.51759 * 123.33180 * 151.64667 * 13 12 11 16 16 C 1.56337 * 101.72344 * 207.96565 * 15 13 12 17 17 C 1.56006 * 105.83219 * 25.45591 * 16 15 13 18 18 H 1.08998 * 110.52555 * 125.54955 * 17 16 15 19 19 N 1.46504 * 110.52147 * 248.15095 * 17 16 15 20 20 C 1.36932 * 120.00223 * 273.54272 * 19 17 16 21 21 H 1.08003 * 119.99815 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00036 * 179.97438 * 20 19 17 23 23 N 1.31614 * 119.99934 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00103 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46997 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47416 * 120.00017 * 24 22 20 27 27 H 1.48502 * 109.47360 * 240.00598 * 24 22 20 28 28 C 1.49704 * 103.98878 * 6.91628 * 17 16 15 29 29 H 1.09005 * 108.54480 * 77.98516 * 28 17 16 30 30 C 1.49290 * 126.07320 * 180.02562 * 11 9 8 31 31 N 1.30834 * 108.20022 * 0.25655 * 7 6 5 32 32 H 1.09000 * 109.46873 * 299.99920 * 1 2 3 33 33 H 1.08994 * 109.47238 * 59.99626 * 1 2 3 34 34 H 1.09004 * 109.47191 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47393 * 240.00112 * 2 1 3 36 36 H 1.09000 * 109.47263 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.47323 * 300.00321 * 3 2 1 38 38 H 1.09009 * 109.46856 * 60.00364 * 3 2 1 39 39 H 1.07998 * 126.13171 * 359.97124 * 5 4 2 40 40 H 1.08001 * 126.04053 * 179.97438 * 6 5 4 41 41 H 1.08998 * 109.47293 * 4.98927 * 8 7 6 42 42 H 1.09004 * 109.46946 * 244.99478 * 8 7 6 43 43 H 1.09001 * 110.79904 * 36.12205 * 12 11 9 44 44 H 1.08999 * 110.96705 * 272.69800 * 12 11 9 45 45 H 1.09001 * 111.02482 * 89.85356 * 15 13 12 46 46 H 1.09002 * 110.98473 * 326.05719 * 15 13 12 47 47 H 1.09002 * 110.19090 * 266.34156 * 16 15 13 48 48 H 1.08994 * 110.19065 * 144.56916 * 16 15 13 49 49 H 0.97002 * 119.99347 * 93.55185 * 19 17 16 50 50 H 0.97005 * 120.00088 * 179.97438 * 23 22 20 51 51 H 1.08997 * 110.39395 * 54.78817 * 30 11 9 52 52 H 1.09001 * 110.39220 * 292.39177 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1934 -0.1393 2.4154 6 6 2.6560 -1.1054 3.2423 7 6 2.7681 -2.2874 2.5030 8 6 3.2454 -3.6166 3.0287 9 6 2.2048 -4.6703 2.7495 10 8 1.1766 -4.3712 2.1801 11 7 2.4168 -5.9450 3.1326 12 6 3.6297 -6.4623 3.8397 13 6 3.0914 -7.6768 4.5683 14 1 2.4536 -7.3839 5.4023 15 6 3.9405 -8.8862 4.9139 16 6 2.8734 -10.0285 4.9332 17 6 1.7197 -9.5491 3.9989 18 1 1.5149 -10.2949 3.2308 19 7 0.5104 -9.2704 4.7776 20 6 -0.3699 -10.2805 5.0602 21 1 -0.1726 -11.2827 4.7093 22 6 -1.5154 -10.0165 5.7985 23 7 -1.7556 -8.7953 6.2264 24 14 -2.7160 -11.3945 6.1845 25 1 -2.2199 -12.6634 5.5935 26 1 -2.8371 -11.5476 7.6566 27 1 -4.0458 -11.0681 5.6097 28 6 2.2516 -8.2929 3.3824 29 1 2.9495 -8.5640 2.5901 30 6 1.4836 -7.0918 2.9258 31 7 2.3917 -2.0386 1.2749 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.6766 1.9563 0.8901 39 1 1.9991 0.8887 2.6832 40 1 2.8970 -0.9848 4.2881 41 1 3.4099 -3.5442 4.1038 42 1 4.1789 -3.8882 2.5358 43 1 4.0102 -5.7243 4.5459 44 1 4.4035 -6.7494 3.1277 45 1 4.4057 -8.7705 5.8929 46 1 4.6922 -9.0677 4.1458 47 1 2.4999 -10.1774 5.9463 48 1 3.3059 -10.9538 4.5525 49 1 0.3334 -8.3703 5.0929 50 1 -2.5563 -8.6107 6.7420 51 1 1.2241 -7.1849 1.8713 52 1 0.5849 -6.9637 3.5292 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026318205.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:23 Heat of formation + Delta-G solvation = 70.926675 kcal Electronic energy + Delta-G solvation = -30531.056944 eV Core-core repulsion = 26533.004438 eV Total energy + Delta-G solvation = -3998.052506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34300 -40.35081 -38.42863 -36.06155 -35.08738 -33.24713 -32.11136 -30.79614 -30.04065 -29.62162 -28.38871 -27.76607 -27.58727 -25.39548 -23.43167 -23.15991 -22.60563 -20.40262 -20.14097 -19.93475 -18.81592 -18.61884 -17.42757 -17.22847 -16.56988 -16.07729 -15.37869 -15.33723 -14.73100 -14.67448 -14.34733 -14.30170 -14.05977 -13.81142 -13.61934 -13.50159 -13.16171 -12.93173 -12.80378 -12.59042 -12.48291 -12.40353 -12.26351 -12.08661 -11.74227 -11.68204 -11.46740 -11.35462 -11.15433 -10.92568 -10.79772 -10.64438 -10.55103 -10.41000 -10.23646 -10.02447 -9.69957 -9.56001 -9.48073 -9.20531 -8.88471 -8.58419 -8.36493 -6.93505 -5.74132 -3.03070 1.88626 2.37180 2.67722 2.94328 3.21175 3.45127 3.50776 3.53093 4.15784 4.27603 4.49556 4.57360 4.61507 4.63537 4.68535 4.79763 5.00606 5.06032 5.07096 5.22338 5.24925 5.29826 5.34278 5.38840 5.42358 5.43584 5.52139 5.56631 5.60548 5.65347 5.69919 5.81021 5.84631 5.86962 5.89344 5.97150 5.99667 6.07240 6.24192 6.33729 6.35417 6.43712 6.51946 6.60051 6.62434 6.71286 6.86410 7.00063 7.09109 7.73793 7.75241 7.78129 8.44077 8.46021 9.55468 10.12674 10.47254 11.48251 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.002283 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.642637 B =12262.059707 C =13584.657651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 C -0.163 4.163 4 N -0.367 5.367 5 C 0.050 3.950 6 C -0.266 4.266 7 C 0.083 3.917 8 C -0.053 4.053 9 C 0.529 3.471 10 O -0.525 6.525 11 N -0.626 5.626 12 C 0.116 3.884 13 C -0.125 4.125 14 H 0.094 0.906 15 C -0.097 4.097 16 C -0.145 4.145 17 C 0.196 3.804 18 H 0.053 0.947 19 N -0.718 5.718 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.292 1.292 28 C -0.120 4.120 29 H 0.067 0.933 30 C 0.134 3.866 31 N -0.262 5.262 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.169 0.831 40 H 0.146 0.854 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.384 0.616 50 H 0.254 0.746 51 H 0.066 0.934 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.382 18.116 -8.778 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 C -0.221 4.221 4 N -0.151 5.151 5 C -0.096 4.096 6 C -0.295 4.295 7 C -0.084 4.084 8 C -0.095 4.095 9 C 0.316 3.684 10 O -0.401 6.401 11 N -0.362 5.362 12 C -0.006 4.006 13 C -0.144 4.144 14 H 0.112 0.888 15 C -0.136 4.136 16 C -0.186 4.186 17 C 0.085 3.915 18 H 0.071 0.929 19 N -0.359 5.359 20 C -0.370 4.370 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.139 4.139 29 H 0.086 0.914 30 C 0.013 3.987 31 N -0.084 5.084 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.186 0.814 40 H 0.164 0.836 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.071 0.929 49 H 0.219 0.781 50 H 0.064 0.936 51 H 0.085 0.915 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.452 17.835 -10.429 25.214 hybrid contribution -0.683 -0.068 1.325 1.493 sum 13.769 17.767 -9.104 24.251 Atomic orbital electron populations 1.22241 0.93566 1.03799 1.02788 1.21223 0.94946 0.92450 0.86034 1.22189 1.02176 0.94159 1.03563 1.48842 1.50477 1.07346 1.08385 1.22344 1.01539 0.99766 0.85944 1.21321 1.14587 0.92376 1.01236 1.21520 1.00078 0.95062 0.91736 1.19988 0.98395 0.88260 1.02852 1.19946 0.87922 0.81543 0.78958 1.90753 1.27999 1.80066 1.41255 1.49824 1.20182 1.07527 1.58697 1.21777 0.87456 0.96231 0.95127 1.22653 0.99168 0.93919 0.98625 0.88783 1.21844 0.96963 0.94185 1.00582 1.23852 0.95884 0.96343 1.02530 1.20023 0.87213 0.92268 0.92008 0.92856 1.42436 1.20598 1.09841 1.63059 1.19279 0.99945 0.90241 1.27530 0.91087 1.24743 0.98672 0.96424 1.01084 1.69668 1.27928 1.18399 1.41910 0.86150 0.81341 0.81276 0.77607 1.20583 1.21976 1.21948 1.22012 0.98831 0.95697 0.97400 0.91438 1.20911 0.93016 0.83741 1.01073 1.77417 1.18817 0.92152 1.19981 0.91961 0.90629 0.91200 0.88114 0.91557 0.90045 0.91566 0.81427 0.83630 0.87166 0.87663 0.90678 0.91194 0.92070 0.92013 0.90561 0.92943 0.78100 0.93572 0.91528 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.52 37.15 0.35 -1.04 16 2 C 0.16 1.35 3.93 -67.93 -0.27 1.08 16 3 C -0.16 -0.87 8.83 37.16 0.33 -0.54 16 4 N -0.37 -4.46 3.53 -54.86 -0.19 -4.65 16 5 C 0.05 0.52 10.59 -17.23 -0.18 0.34 16 6 C -0.27 -3.13 10.72 -40.01 -0.43 -3.56 16 7 C 0.08 1.18 6.01 -82.41 -0.50 0.68 16 8 C -0.05 -0.65 5.33 -29.04 -0.15 -0.81 16 9 C 0.53 8.80 7.87 -10.99 -0.09 8.71 16 10 O -0.53 -11.21 15.94 5.55 0.09 -11.12 16 11 N -0.63 -9.69 3.43 -171.57 -0.59 -10.28 16 12 C 0.12 1.37 6.48 -3.05 -0.02 1.35 16 13 C -0.12 -1.76 3.10 -89.36 -0.28 -2.03 16 14 H 0.09 1.59 7.99 -51.93 -0.41 1.17 16 15 C -0.10 -1.26 6.63 -25.57 -0.17 -1.43 16 16 C -0.15 -2.37 6.73 -23.33 -0.16 -2.53 16 17 C 0.20 3.72 3.44 -67.95 -0.23 3.49 16 18 H 0.05 1.04 8.11 -51.93 -0.42 0.62 16 19 N -0.72 -17.41 4.92 -53.45 -0.26 -17.67 16 20 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 24 Si 0.90 22.48 29.55 -169.99 -5.02 17.46 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 C -0.12 -1.93 2.25 -91.24 -0.21 -2.13 16 29 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 30 C 0.13 2.38 6.67 -4.13 -0.03 2.36 16 31 N -0.26 -4.11 11.94 33.67 0.40 -3.71 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.31 7.16 -51.92 -0.37 -0.06 16 39 H 0.17 1.13 7.26 -52.49 -0.38 0.75 16 40 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.11 1.05 7.89 -51.93 -0.41 0.64 16 42 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.71 7.58 -51.93 -0.39 0.32 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 1.45 7.98 -51.93 -0.41 1.03 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.38 10.04 6.70 -40.82 -0.27 9.77 16 50 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 52 H 0.08 1.75 7.13 -51.93 -0.37 1.37 16 LS Contribution 414.97 15.07 6.25 6.25 Total: -1.00 -35.71 414.97 -9.78 -45.48 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -8.91 Total: 8.92 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.27 Total: -3.19 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.08 Total: -63.81 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.71 -9.78 -45.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026318205.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.410 kcal (2) G-P(sol) polarization free energy of solvation -35.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds