Wall clock time and date at job start Wed Apr 1 2020 04:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47215 * 2 1 4 4 N 1.46506 * 109.47288 * 120.00102 * 2 1 3 5 5 C 1.34943 * 126.03669 * 274.99767 * 4 2 1 6 6 C 1.35316 * 107.74407 * 179.97438 * 5 4 2 7 7 C 1.39870 * 107.92263 * 0.02562 * 6 5 4 8 8 C 1.50693 * 125.89957 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47552 * 124.99722 * 8 7 6 10 10 O 1.21286 * 119.99728 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00358 * 179.97438 * 9 8 7 12 12 C 1.49624 * 126.07138 * 359.97295 * 11 9 8 13 13 C 1.51517 * 102.49325 * 154.37560 * 12 11 9 14 14 H 1.09002 * 111.12360 * 288.14322 * 13 12 11 15 15 C 1.51759 * 123.33180 * 151.64667 * 13 12 11 16 16 C 1.56337 * 101.72344 * 207.96565 * 15 13 12 17 17 C 1.56006 * 105.83219 * 25.45591 * 16 15 13 18 18 H 1.08998 * 110.52555 * 125.54955 * 17 16 15 19 19 N 1.46504 * 110.52147 * 248.15095 * 17 16 15 20 20 C 1.36932 * 120.00223 * 273.54272 * 19 17 16 21 21 H 1.08003 * 119.99815 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00036 * 179.97438 * 20 19 17 23 23 N 1.31614 * 119.99934 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00103 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46997 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47416 * 120.00017 * 24 22 20 27 27 H 1.48502 * 109.47360 * 240.00598 * 24 22 20 28 28 C 1.49704 * 103.98878 * 6.91628 * 17 16 15 29 29 H 1.09005 * 108.54480 * 77.98516 * 28 17 16 30 30 C 1.49290 * 126.07320 * 180.02562 * 11 9 8 31 31 N 1.30834 * 108.20022 * 0.25655 * 7 6 5 32 32 H 1.09000 * 109.46873 * 299.99920 * 1 2 3 33 33 H 1.08994 * 109.47238 * 59.99626 * 1 2 3 34 34 H 1.09004 * 109.47191 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47393 * 240.00112 * 2 1 3 36 36 H 1.09000 * 109.47263 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.47323 * 300.00321 * 3 2 1 38 38 H 1.09009 * 109.46856 * 60.00364 * 3 2 1 39 39 H 1.07998 * 126.13171 * 359.97124 * 5 4 2 40 40 H 1.08001 * 126.04053 * 179.97438 * 6 5 4 41 41 H 1.08998 * 109.47293 * 4.98927 * 8 7 6 42 42 H 1.09004 * 109.46946 * 244.99478 * 8 7 6 43 43 H 1.09001 * 110.79904 * 36.12205 * 12 11 9 44 44 H 1.08999 * 110.96705 * 272.69800 * 12 11 9 45 45 H 1.09001 * 111.02482 * 89.85356 * 15 13 12 46 46 H 1.09002 * 110.98473 * 326.05719 * 15 13 12 47 47 H 1.09002 * 110.19090 * 266.34156 * 16 15 13 48 48 H 1.08994 * 110.19065 * 144.56916 * 16 15 13 49 49 H 0.97002 * 119.99347 * 93.55185 * 19 17 16 50 50 H 0.97005 * 120.00088 * 179.97438 * 23 22 20 51 51 H 1.08997 * 110.39395 * 54.78817 * 30 11 9 52 52 H 1.09001 * 110.39220 * 292.39177 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1934 -0.1393 2.4154 6 6 2.6560 -1.1054 3.2423 7 6 2.7681 -2.2874 2.5030 8 6 3.2454 -3.6166 3.0287 9 6 2.2048 -4.6703 2.7495 10 8 1.1766 -4.3712 2.1801 11 7 2.4168 -5.9450 3.1326 12 6 3.6297 -6.4623 3.8397 13 6 3.0914 -7.6768 4.5683 14 1 2.4536 -7.3839 5.4023 15 6 3.9405 -8.8862 4.9139 16 6 2.8734 -10.0285 4.9332 17 6 1.7197 -9.5491 3.9989 18 1 1.5149 -10.2949 3.2308 19 7 0.5104 -9.2704 4.7776 20 6 -0.3699 -10.2805 5.0602 21 1 -0.1726 -11.2827 4.7093 22 6 -1.5154 -10.0165 5.7985 23 7 -1.7556 -8.7953 6.2264 24 14 -2.7160 -11.3945 6.1845 25 1 -2.2199 -12.6634 5.5935 26 1 -2.8371 -11.5476 7.6566 27 1 -4.0458 -11.0681 5.6097 28 6 2.2516 -8.2929 3.3824 29 1 2.9495 -8.5640 2.5901 30 6 1.4836 -7.0918 2.9258 31 7 2.3917 -2.0386 1.2749 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.6766 1.9563 0.8901 39 1 1.9991 0.8887 2.6832 40 1 2.8970 -0.9848 4.2881 41 1 3.4099 -3.5442 4.1038 42 1 4.1789 -3.8882 2.5358 43 1 4.0102 -5.7243 4.5459 44 1 4.4035 -6.7494 3.1277 45 1 4.4057 -8.7705 5.8929 46 1 4.6922 -9.0677 4.1458 47 1 2.4999 -10.1774 5.9463 48 1 3.3059 -10.9538 4.5525 49 1 0.3334 -8.3703 5.0929 50 1 -2.5563 -8.6107 6.7420 51 1 1.2241 -7.1849 1.8713 52 1 0.5849 -6.9637 3.5292 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026318205.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:22 Heat of formation + Delta-G solvation = 47.296701 kcal Electronic energy + Delta-G solvation = -30532.081617 eV Core-core repulsion = 26533.004438 eV Total energy + Delta-G solvation = -3999.077179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.23208 -41.61127 -39.75515 -36.82579 -36.59449 -35.01255 -33.07540 -32.57091 -31.02248 -30.75399 -29.82710 -28.69718 -28.20388 -26.91648 -25.15339 -24.43706 -23.54886 -21.38514 -21.10470 -20.94550 -20.23867 -19.80821 -19.38178 -18.01987 -17.80297 -17.38618 -16.74333 -16.38034 -16.16305 -15.82295 -15.57828 -15.51219 -15.31756 -15.03269 -14.69739 -14.63158 -14.44333 -13.90298 -13.81742 -13.67989 -13.49021 -13.27824 -13.12228 -13.11235 -13.04669 -12.91341 -12.83691 -12.60349 -12.34076 -12.29983 -12.18429 -12.10456 -12.01489 -11.83660 -11.47577 -11.47025 -11.36467 -11.01925 -10.88028 -10.79261 -10.16565 -9.67701 -9.43979 -8.97043 -7.93163 -5.20535 1.01802 1.45100 1.46324 1.55922 1.60218 1.68026 1.71330 2.10589 2.56266 3.05418 3.41130 3.44917 3.66028 3.75287 3.79149 3.91558 3.95686 4.07148 4.08144 4.10136 4.20879 4.26328 4.37433 4.48618 4.51444 4.53435 4.57232 4.61008 4.67718 4.71765 4.76584 4.77226 4.81894 4.85965 4.89414 4.92431 4.99043 5.08232 5.09748 5.12989 5.16771 5.22505 5.25689 5.27624 5.43087 5.46876 5.55702 5.72134 5.73627 6.25678 6.29359 6.55987 6.86393 7.20096 7.34826 8.13570 8.34875 9.30606 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.002283 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.642637 B =12262.059707 C =13584.657651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 C -0.152 4.152 4 N -0.373 5.373 5 C 0.055 3.945 6 C -0.283 4.283 7 C 0.062 3.938 8 C -0.043 4.043 9 C 0.521 3.479 10 O -0.586 6.586 11 N -0.625 5.625 12 C 0.120 3.880 13 C -0.111 4.111 14 H 0.057 0.943 15 C -0.081 4.081 16 C -0.139 4.139 17 C 0.182 3.818 18 H 0.046 0.954 19 N -0.731 5.731 20 C -0.231 4.231 21 H 0.078 0.922 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.969 3.031 25 H -0.263 1.263 26 H -0.294 1.294 27 H -0.300 1.300 28 C -0.122 4.122 29 H 0.099 0.901 30 C 0.137 3.863 31 N -0.319 5.319 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.029 0.971 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.207 0.793 40 H 0.169 0.831 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.044 0.956 48 H 0.073 0.927 49 H 0.371 0.629 50 H 0.248 0.752 51 H 0.052 0.948 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.836 19.067 -8.834 28.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 C -0.210 4.210 4 N -0.156 5.156 5 C -0.091 4.091 6 C -0.312 4.312 7 C -0.105 4.105 8 C -0.084 4.084 9 C 0.310 3.690 10 O -0.466 6.466 11 N -0.359 5.359 12 C 0.000 4.000 13 C -0.130 4.130 14 H 0.076 0.924 15 C -0.119 4.119 16 C -0.179 4.179 17 C 0.073 3.927 18 H 0.064 0.936 19 N -0.371 5.371 20 C -0.363 4.363 21 H 0.096 0.904 22 C -0.273 4.273 23 N -0.624 5.624 24 Si 0.799 3.201 25 H -0.188 1.188 26 H -0.222 1.222 27 H -0.227 1.227 28 C -0.142 4.142 29 H 0.117 0.883 30 C 0.015 3.985 31 N -0.141 5.141 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.049 0.951 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.224 0.776 40 H 0.186 0.814 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.096 0.904 46 H 0.117 0.883 47 H 0.063 0.937 48 H 0.091 0.909 49 H 0.203 0.797 50 H 0.056 0.944 51 H 0.071 0.929 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 17.996 18.735 -10.500 28.020 hybrid contribution -1.777 -0.362 1.251 2.203 sum 16.219 18.374 -9.249 26.195 Atomic orbital electron populations 1.22207 0.93627 1.01618 1.04360 1.21534 0.94925 0.94236 0.84868 1.22149 1.01992 0.91558 1.05262 1.49154 1.50083 1.06541 1.09811 1.23003 0.99780 1.01248 0.85059 1.21707 1.15128 0.91888 1.02477 1.21962 1.00234 0.96416 0.91846 1.20091 0.97453 0.85845 1.04971 1.20872 0.88075 0.82293 0.77721 1.90722 1.30764 1.81090 1.44033 1.49920 1.20823 1.06729 1.58467 1.22080 0.86227 0.95740 0.95961 1.22596 0.98607 0.95331 0.96513 0.92415 1.21798 0.96118 0.91124 1.02834 1.23646 0.95734 0.98879 0.99668 1.20371 0.86429 0.93873 0.92002 0.93583 1.42622 1.22224 1.08578 1.63655 1.19686 0.99949 0.91022 1.25623 0.90433 1.25540 1.00903 0.98580 1.02290 1.69841 1.28383 1.20502 1.43656 0.85117 0.78671 0.79253 0.77028 1.18760 1.22158 1.22737 1.21872 0.99008 0.94019 0.99289 0.88273 1.20639 0.92513 0.86134 0.99230 1.77316 1.20813 0.94486 1.21521 0.91582 0.87830 0.95145 0.89112 0.91702 0.87861 0.90315 0.77601 0.81379 0.83994 0.84793 0.87292 0.87604 0.90432 0.88325 0.93747 0.90853 0.79716 0.94365 0.92940 0.95017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.52 71.98 0.69 -2.02 16 2 C 0.15 2.47 3.93 44.99 0.18 2.65 16 3 C -0.15 -1.27 8.83 71.98 0.64 -0.63 16 4 N -0.37 -8.99 3.53 -327.49 -1.15 -10.15 16 5 C 0.05 1.07 10.59 83.54 0.88 1.96 16 6 C -0.28 -6.27 10.72 21.99 0.24 -6.03 16 7 C 0.06 1.72 6.01 43.10 0.26 1.98 16 8 C -0.04 -0.97 5.33 29.10 0.16 -0.81 16 9 C 0.52 17.49 7.87 87.66 0.69 18.18 16 10 O -0.59 -26.57 15.94 -3.05 -0.05 -26.62 16 11 N -0.62 -19.05 3.43 -815.12 -2.79 -21.84 16 12 C 0.12 2.39 6.48 85.29 0.55 2.95 16 13 C -0.11 -2.90 3.10 -9.98 -0.03 -2.93 16 14 H 0.06 1.95 7.99 -2.39 -0.02 1.93 16 15 C -0.08 -1.77 6.63 31.35 0.21 -1.56 16 16 C -0.14 -4.31 6.73 32.80 0.22 -4.08 16 17 C 0.18 6.93 3.44 44.98 0.15 7.09 16 18 H 0.05 1.79 8.11 -2.39 -0.02 1.77 16 19 N -0.73 -36.92 4.92 -323.01 -1.59 -38.51 16 20 C -0.23 -12.93 9.97 84.03 0.84 -12.09 16 21 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 23 N -0.97 -61.79 13.06 21.65 0.28 -61.51 16 24 Si 0.97 47.55 29.55 68.60 2.03 49.58 16 25 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 28 C -0.12 -3.86 2.25 -11.20 -0.03 -3.89 16 29 H 0.10 2.57 7.99 -2.38 -0.02 2.55 16 30 C 0.14 5.14 6.67 84.78 0.57 5.70 16 31 N -0.32 -10.25 11.94 -47.39 -0.57 -10.82 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16 38 H 0.08 0.48 7.16 -2.38 -0.02 0.46 16 39 H 0.21 2.13 7.26 -2.91 -0.02 2.11 16 40 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.14 2.24 7.89 -2.39 -0.02 2.22 16 42 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.11 1.53 7.58 -2.39 -0.02 1.51 16 44 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.04 1.66 7.98 -2.39 -0.02 1.64 16 48 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.37 20.64 6.70 -92.71 -0.62 20.02 16 50 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 51 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.03 1.48 7.13 -2.39 -0.02 1.47 16 Total: -1.00 -86.81 414.97 3.11 -83.70 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.28 Total: 34.06 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 6.67 Total: 2.11 kcal Atomic # 7 Polarization: -137.01 SS G_CDS: -5.82 Total: -142.83 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.62 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -86.81 3.11 -83.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026318205.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.997 kcal (2) G-P(sol) polarization free energy of solvation -86.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds