Wall clock time and date at job start Wed Apr 1 2020 04:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47207 * 2 1 4 4 N 1.46502 * 109.47370 * 179.97438 * 3 2 1 5 5 N 1.39932 * 125.75321 * 90.01845 * 4 3 2 6 6 C 1.30445 * 108.89569 * 179.97438 * 5 4 3 7 7 C 1.41291 * 108.02594 * 0.02562 * 6 5 4 8 8 C 1.47423 * 126.41700 * 179.97438 * 7 6 5 9 9 O 1.21611 * 119.99933 * 189.55748 * 8 7 6 10 10 N 1.34776 * 120.00159 * 9.56068 * 8 7 6 11 11 C 1.47207 * 126.69829 * 359.86340 * 10 8 7 12 12 C 1.53787 * 106.37789 * 148.71930 * 11 10 8 13 13 H 1.08999 * 111.70686 * 257.23217 * 12 11 10 14 14 C 1.54318 * 109.06552 * 132.42659 * 12 11 10 15 15 C 1.55054 * 103.93809 * 222.03216 * 14 12 11 16 16 C 1.55053 * 102.10936 * 40.05392 * 15 14 12 17 17 H 1.09007 * 110.65406 * 78.61297 * 16 15 14 18 18 N 1.46497 * 110.53822 * 201.33073 * 16 15 14 19 19 C 1.36940 * 119.99664 * 269.51768 * 18 16 15 20 20 H 1.07993 * 120.00659 * 0.02562 * 19 18 16 21 21 C 1.38819 * 119.99349 * 179.97438 * 19 18 16 22 22 N 1.31615 * 120.00439 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99553 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47108 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.46712 * 120.00330 * 23 21 19 26 26 H 1.48504 * 109.46877 * 240.00332 * 23 21 19 27 27 C 1.54324 * 103.93800 * 319.94773 * 16 15 14 28 28 H 1.08994 * 111.68892 * 262.79049 * 27 16 15 29 29 C 1.48780 * 126.26060 * 179.36193 * 10 8 7 30 30 C 1.34261 * 125.75040 * 270.26838 * 4 3 2 31 31 C 1.50698 * 126.29533 * 0.03550 * 30 4 3 32 32 H 1.09004 * 109.46682 * 60.00941 * 1 2 3 33 33 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47531 * 300.00771 * 1 2 3 35 35 H 1.09000 * 109.47531 * 239.99229 * 2 1 3 36 36 H 1.09004 * 109.46682 * 119.99059 * 2 1 3 37 37 H 1.09000 * 109.47504 * 59.99212 * 3 2 1 38 38 H 1.09006 * 109.46694 * 299.99657 * 3 2 1 39 39 H 1.08006 * 125.99095 * 180.02562 * 6 5 4 40 40 H 1.08990 * 110.07859 * 29.49007 * 11 10 8 41 41 H 1.09000 * 110.12054 * 267.96786 * 11 10 8 42 42 H 1.09008 * 110.53593 * 340.64104 * 14 12 11 43 43 H 1.09001 * 110.53626 * 103.27136 * 14 12 11 44 44 H 1.09004 * 110.90229 * 281.85367 * 15 14 12 45 45 H 1.08999 * 110.90450 * 158.25815 * 15 14 12 46 46 H 0.96996 * 119.99829 * 89.51893 * 18 16 15 47 47 H 0.96999 * 120.00293 * 179.97438 * 22 21 19 48 48 H 1.09004 * 110.05309 * 92.06845 * 29 10 8 49 49 H 1.09002 * 110.84452 * 330.03111 * 29 10 8 50 50 H 1.09001 * 109.46996 * 270.19902 * 31 30 4 51 51 H 1.09006 * 109.47089 * 30.19667 * 31 30 4 52 52 H 1.08994 * 109.46878 * 150.19828 * 31 30 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 7 4.3231 1.4427 -1.1346 6 6 5.5714 1.4433 -0.7558 7 6 5.5996 1.4428 0.6568 8 6 6.8032 1.4426 1.5081 9 8 6.6999 1.2673 2.7071 10 7 8.0180 1.6367 0.9577 11 6 8.3128 1.8590 -0.4673 12 6 9.5547 2.7647 -0.5171 13 1 9.2920 3.7967 -0.7497 14 6 10.5678 2.1762 -1.5214 15 6 11.9362 2.3399 -0.8108 16 6 11.5859 1.9810 0.6563 17 1 11.5182 0.9003 0.7821 18 7 12.5799 2.5425 1.5743 19 6 13.6826 1.8086 1.9217 20 1 13.8197 0.8161 1.5188 21 6 14.6248 2.3410 2.7912 22 7 14.4581 3.5508 3.2819 23 14 16.1294 1.3402 3.2646 24 1 16.0815 0.0218 2.5829 25 1 17.3570 2.0670 2.8524 26 1 16.1453 1.1361 4.7355 27 6 10.2084 2.6393 0.8813 28 1 10.3002 3.6077 1.3731 29 6 9.3165 1.6767 1.6829 30 6 4.2890 1.4376 1.0906 31 6 3.8239 1.4303 2.5239 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5137 0.8901 37 1 1.6766 1.9564 0.8899 38 1 1.6767 1.9563 -0.8901 39 1 6.4325 1.4439 -1.4077 40 1 7.4701 2.3527 -0.9512 41 1 8.5225 0.9093 -0.9594 42 1 10.3562 1.1227 -1.7052 43 1 10.5501 2.7373 -2.4557 44 1 12.2926 3.3674 -0.8854 45 1 12.6709 1.6444 -1.2166 46 1 12.4570 3.4341 1.9359 47 1 15.1163 3.9227 3.8896 48 1 9.7634 0.6827 1.7043 49 1 9.1822 2.0491 2.6985 50 1 3.7078 2.4563 2.8734 51 1 2.8671 0.9126 2.5928 52 1 4.5602 0.9170 3.1422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026386344.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:43 Heat of formation + Delta-G solvation = 52.490429 kcal Electronic energy + Delta-G solvation = -30660.461073 eV Core-core repulsion = 26661.609111 eV Total energy + Delta-G solvation = -3998.851962 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.75086 -39.97174 -38.11728 -35.91992 -35.11622 -33.34885 -32.66769 -31.71064 -30.97221 -29.62497 -28.47803 -27.41777 -26.77533 -25.04733 -23.98514 -22.89256 -22.56086 -21.70534 -20.73329 -19.99236 -19.14140 -18.78844 -17.44639 -16.98259 -16.41596 -15.96223 -15.76885 -15.40142 -15.20697 -14.91541 -14.77854 -14.16726 -14.05231 -13.73734 -13.69108 -13.39942 -13.04728 -13.02514 -12.99181 -12.77308 -12.61903 -12.46101 -12.37098 -12.22076 -11.93790 -11.72781 -11.60053 -11.42190 -11.13819 -11.03348 -10.77998 -10.75371 -10.63787 -10.34295 -10.21434 -10.15158 -9.90621 -9.70808 -9.62587 -9.57753 -8.86027 -8.84771 -8.43574 -6.92674 -5.75233 -3.03691 1.33815 2.02263 2.05379 3.13382 3.44859 3.48084 3.50711 3.52743 4.05546 4.22796 4.32779 4.45828 4.56329 4.59807 4.65321 4.68126 4.72491 4.88117 4.90164 4.98780 5.06435 5.10840 5.20672 5.27727 5.35775 5.42377 5.47726 5.48227 5.48966 5.56749 5.61060 5.66168 5.70274 5.83430 5.85955 5.92777 5.98528 6.04294 6.11614 6.20077 6.26274 6.31457 6.38917 6.51450 6.58816 6.61474 6.70135 6.82539 7.06622 7.34374 7.72863 7.74308 8.37259 8.43319 9.54659 10.12432 10.46406 11.47375 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023407 B = 0.002091 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.958952 B =13387.698059 C =14134.901373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.128 3.872 4 N -0.362 5.362 5 N -0.300 5.300 6 C 0.069 3.931 7 C -0.290 4.290 8 C 0.609 3.391 9 O -0.551 6.551 10 N -0.614 5.614 11 C 0.094 3.906 12 C -0.099 4.099 13 H 0.086 0.914 14 C -0.116 4.116 15 C -0.143 4.143 16 C 0.184 3.816 17 H 0.058 0.942 18 N -0.720 5.720 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.108 4.108 28 H 0.088 0.912 29 C 0.121 3.879 30 C 0.156 3.844 31 C -0.103 4.103 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.201 0.799 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.069 0.931 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.610 -3.903 -10.040 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.007 3.993 4 N -0.141 5.141 5 N -0.119 5.119 6 C -0.118 4.118 7 C -0.304 4.304 8 C 0.399 3.601 9 O -0.431 6.431 10 N -0.347 5.347 11 C -0.029 4.029 12 C -0.119 4.119 13 H 0.104 0.896 14 C -0.155 4.155 15 C -0.184 4.184 16 C 0.073 3.927 17 H 0.076 0.924 18 N -0.360 5.360 19 C -0.370 4.370 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.128 4.128 28 H 0.106 0.894 29 C 0.000 4.000 30 C 0.024 3.976 31 C -0.161 4.161 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.217 0.783 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.091 0.909 49 H 0.099 0.901 50 H 0.103 0.897 51 H 0.088 0.912 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -28.566 -4.150 -10.325 30.657 hybrid contribution 1.460 -0.118 0.867 1.702 sum -27.106 -4.268 -9.459 29.024 Atomic orbital electron populations 1.21698 0.94052 1.02676 1.02295 1.21951 0.96875 0.95578 1.03677 1.21884 0.73829 0.98794 1.04806 1.48538 1.06608 1.55564 1.03414 1.77181 1.01876 1.25203 1.07603 1.24733 0.95482 0.97267 0.94327 1.19966 0.92777 1.24152 0.93545 1.16802 0.80914 0.76031 0.86309 1.90727 1.85805 1.51673 1.14880 1.48744 1.06081 1.71070 1.08771 1.22703 0.98120 0.99458 0.82639 1.22566 0.94057 0.99046 0.96189 0.89602 1.22493 0.95838 1.00050 0.97089 1.23293 0.94935 1.01760 0.98374 1.21254 0.86450 0.96007 0.89032 0.92389 1.42448 1.22529 1.18224 1.52799 1.19288 0.98041 0.97982 1.21639 0.91116 1.24738 0.99181 0.96759 1.00252 1.69664 1.36675 1.15571 1.36114 0.86147 0.83101 0.79153 0.77970 1.20564 1.21943 1.21913 1.22910 0.96130 0.99608 0.94166 0.89363 1.22449 0.80952 0.99848 0.96800 1.21493 0.90024 0.95003 0.91082 1.20731 1.02659 1.04111 0.88579 0.92178 0.91814 0.92227 0.90760 0.91168 0.88666 0.88300 0.78258 0.90089 0.90986 0.91644 0.92174 0.91579 0.92171 0.78186 0.93581 0.90927 0.90111 0.89660 0.91190 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.91 37.16 0.37 -0.16 16 2 C -0.14 -0.78 6.26 -26.73 -0.17 -0.94 16 3 C 0.13 0.79 6.03 -4.04 -0.02 0.76 16 4 N -0.36 -3.65 3.58 -56.60 -0.20 -3.85 16 5 N -0.30 -3.52 12.50 30.86 0.39 -3.14 16 6 C 0.07 0.79 10.30 -16.98 -0.17 0.61 16 7 C -0.29 -3.79 6.05 -105.07 -0.64 -4.43 16 8 C 0.61 9.45 7.86 -12.52 -0.10 9.35 16 9 O -0.55 -10.06 15.08 5.27 0.08 -9.98 16 10 N -0.61 -8.86 3.35 -171.56 -0.58 -9.43 16 11 C 0.09 1.06 5.11 -3.25 -0.02 1.04 16 12 C -0.10 -1.24 3.91 -88.53 -0.35 -1.58 16 13 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.12 -1.43 6.35 -24.96 -0.16 -1.59 16 15 C -0.14 -2.36 6.60 -24.56 -0.16 -2.52 16 16 C 0.18 3.45 3.03 -66.15 -0.20 3.25 16 17 H 0.06 1.13 7.15 -51.92 -0.37 0.75 16 18 N -0.72 -17.49 5.21 -51.70 -0.27 -17.76 16 19 C -0.24 -6.50 9.96 -15.06 -0.15 -6.65 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 23 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 C -0.11 -1.72 3.55 -88.54 -0.31 -2.03 16 28 H 0.09 1.53 7.81 -51.93 -0.41 1.12 16 29 C 0.12 1.96 6.64 -2.38 -0.02 1.94 16 30 C 0.16 1.76 7.00 -81.60 -0.57 1.19 16 31 C -0.10 -0.93 9.44 36.00 0.34 -0.59 16 32 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.40 7.64 -51.93 -0.40 0.00 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.20 1.81 4.96 -52.48 -0.26 1.55 16 40 H 0.08 0.78 4.87 -51.93 -0.25 0.52 16 41 H 0.07 0.73 7.13 -51.93 -0.37 0.36 16 42 H 0.06 0.74 7.19 -51.92 -0.37 0.36 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.38 9.99 7.61 -40.82 -0.31 9.68 16 47 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.07 1.21 7.13 -51.93 -0.37 0.84 16 49 H 0.08 1.45 7.97 -51.93 -0.41 1.03 16 50 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.07 0.43 7.71 -51.93 -0.40 0.03 16 52 H 0.11 1.25 6.36 -51.93 -0.33 0.92 16 LS Contribution 406.38 15.07 6.12 6.12 Total: -1.00 -33.55 406.38 -9.63 -43.18 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -8.45 Total: 7.60 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.42 Total: -2.81 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.06 Total: -61.46 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.55 -9.63 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026386344.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.672 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds