Wall clock time and date at job start Wed Apr 1 2020 04:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46880 * 2 1 4 4 N 1.46505 * 109.47317 * 119.99477 * 2 1 3 5 5 N 1.39933 * 125.75343 * 299.98294 * 4 2 1 6 6 C 1.30455 * 108.89533 * 179.97438 * 5 4 2 7 7 C 1.41288 * 108.01916 * 359.97438 * 6 5 4 8 8 C 1.47432 * 126.40960 * 179.97438 * 7 6 5 9 9 O 1.21600 * 119.99819 * 185.52260 * 8 7 6 10 10 N 1.34773 * 120.00378 * 5.51301 * 8 7 6 11 11 C 1.46499 * 120.00109 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46934 * 185.89678 * 11 10 8 13 13 H 1.09005 * 109.99865 * 295.61183 * 12 11 10 14 14 C 1.54323 * 109.88252 * 174.51670 * 12 11 10 15 15 C 1.55276 * 103.01073 * 218.46692 * 14 12 11 16 16 C 1.54916 * 101.52743 * 35.35790 * 15 14 12 17 17 N 1.47024 * 109.88407 * 56.70609 * 12 11 10 18 18 C 1.36934 * 125.64981 * 298.33844 * 17 12 11 19 19 H 1.08001 * 119.99642 * 333.43042 * 18 17 12 20 20 C 1.38812 * 119.99772 * 153.43525 * 18 17 12 21 21 N 1.31618 * 119.99738 * 162.85358 * 20 18 17 22 22 Si 1.86796 * 120.00246 * 342.85375 * 20 18 17 23 23 H 1.48499 * 109.47148 * 85.24293 * 22 20 18 24 24 H 1.48500 * 109.47390 * 205.24176 * 22 20 18 25 25 H 1.48502 * 109.47237 * 325.24184 * 22 20 18 26 26 C 1.34263 * 125.75295 * 120.26265 * 4 2 1 27 27 C 1.50701 * 126.28776 * 0.02562 * 26 4 2 28 28 C 1.52991 * 117.49978 * 313.42237 * 27 26 4 29 29 C 1.53002 * 117.49472 * 244.76209 * 27 26 4 30 30 H 1.09006 * 109.46687 * 300.00121 * 1 2 3 31 31 H 1.09000 * 109.47169 * 60.00006 * 1 2 3 32 32 H 1.08995 * 109.46835 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47128 * 239.99816 * 2 1 3 34 34 H 1.09000 * 109.47215 * 299.99966 * 3 2 1 35 35 H 1.08995 * 109.47390 * 59.99977 * 3 2 1 36 36 H 1.08999 * 109.47110 * 180.02562 * 3 2 1 37 37 H 1.07993 * 125.98571 * 180.02562 * 6 5 4 38 38 H 0.97008 * 119.99942 * 0.02562 * 10 8 7 39 39 H 1.09000 * 109.46872 * 65.89944 * 11 10 8 40 40 H 1.08993 * 109.47653 * 305.89333 * 11 10 8 41 41 H 1.08998 * 110.72052 * 336.75523 * 14 12 11 42 42 H 1.09003 * 110.72358 * 100.02537 * 14 12 11 43 43 H 1.09005 * 110.95840 * 277.34197 * 15 14 12 44 44 H 1.09000 * 111.10467 * 153.44788 * 15 14 12 45 45 H 1.08990 * 110.36666 * 204.23537 * 16 15 14 46 46 H 1.08998 * 110.36170 * 82.02051 * 16 15 14 47 47 H 0.96999 * 120.00057 * 179.97438 * 21 20 18 48 48 H 1.09002 * 115.54736 * 99.09874 * 27 26 4 49 49 H 1.09004 * 117.49976 * 0.02562 * 28 27 26 50 50 H 1.09008 * 117.49770 * 145.02662 * 28 27 26 51 51 H 1.08998 * 117.49643 * 214.97938 * 29 27 26 52 52 H 1.08996 * 117.49855 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 7 1.7560 -0.3186 2.5195 6 6 2.3500 -1.1596 3.3205 7 6 3.0242 -2.1157 2.5284 8 6 3.8262 -3.2508 3.0203 9 8 4.4408 -3.9466 2.2349 10 7 3.8784 -3.5172 4.3404 11 6 4.6758 -4.6448 4.8292 12 6 4.4489 -4.8162 6.3325 13 1 4.8190 -3.9416 6.8675 14 6 5.1750 -6.0830 6.8318 15 6 4.1801 -6.6702 7.8694 16 6 2.8164 -6.3227 7.2217 17 7 3.0155 -4.9989 6.6042 18 6 2.0290 -4.0898 6.3297 19 1 2.2617 -3.0359 6.2901 20 6 0.7299 -4.5229 6.1023 21 7 -0.2701 -3.6700 6.1736 22 14 0.4009 -6.3160 5.6950 23 1 0.2836 -7.0959 6.9533 24 1 -0.8645 -6.4248 4.9255 25 1 1.5220 -6.8528 4.8825 26 6 2.7977 -1.7838 1.2078 27 6 3.3243 -2.5165 0.0008 28 6 2.3364 -2.8226 -1.1265 29 6 2.8397 -3.9505 -0.2222 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4426 -0.0005 37 1 2.3291 -1.1306 4.3998 38 1 3.3880 -2.9623 4.9669 39 1 5.7319 -4.4516 4.6408 40 1 4.3747 -5.5548 4.3103 41 1 5.3340 -6.7845 6.0129 42 1 6.1207 -5.8233 7.3076 43 1 4.2898 -6.1787 8.8362 44 1 4.3037 -7.7489 7.9649 45 1 2.0370 -6.2733 7.9820 46 1 2.5583 -7.0606 6.4621 47 1 -1.1778 -3.9725 6.0144 48 1 4.3515 -2.2830 -0.2797 49 1 1.3054 -2.4937 -0.9954 50 1 2.7136 -2.7910 -2.1488 51 1 3.5478 -4.6602 -0.6499 52 1 2.1403 -4.3640 0.5043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028250436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:50 Heat of formation + Delta-G solvation = 89.393481 kcal Electronic energy + Delta-G solvation = -32206.154718 eV Core-core repulsion = 28208.902992 eV Total energy + Delta-G solvation = -3997.251726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.28377 -38.77928 -37.62104 -36.94499 -35.52278 -33.65907 -32.65524 -30.48285 -30.03541 -29.97578 -28.76517 -27.45286 -25.15005 -24.11984 -23.16611 -22.92851 -22.07219 -21.58889 -20.83557 -19.63928 -19.09902 -18.86458 -17.32408 -16.75211 -15.98471 -15.78560 -15.36834 -15.11648 -15.02597 -14.74574 -14.51996 -14.27649 -14.07336 -13.39465 -13.24526 -13.20007 -12.99980 -12.86175 -12.56165 -12.47823 -12.31047 -12.27846 -11.86049 -11.63261 -11.59652 -11.49662 -11.38928 -11.24057 -11.11818 -10.92354 -10.87811 -10.57269 -10.49504 -10.42685 -10.07743 -10.04465 -9.92970 -9.46379 -9.09829 -9.06566 -8.71863 -8.34656 -7.96867 -7.00449 -5.99984 -3.36616 1.86098 2.50086 2.68419 3.33811 3.47821 3.52065 3.74927 4.01864 4.21667 4.40756 4.48165 4.52455 4.75311 4.82997 4.87864 4.96384 5.00759 5.14637 5.21003 5.25465 5.31365 5.35937 5.42995 5.47927 5.54274 5.56242 5.58664 5.60523 5.68590 5.80033 5.87101 5.94252 5.97645 6.00650 6.05399 6.09877 6.13760 6.18525 6.25448 6.26275 6.29076 6.39685 6.46782 6.65980 6.79215 6.84853 6.90709 7.13195 7.35060 7.71880 7.92936 8.22510 8.49872 8.74075 9.11821 9.63322 10.16908 11.14859 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.003700 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.168150 B = 7566.640821 C = 8206.380805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 C -0.160 4.160 4 N -0.355 5.355 5 N -0.295 5.295 6 C 0.095 3.905 7 C -0.274 4.274 8 C 0.588 3.412 9 O -0.566 6.566 10 N -0.699 5.699 11 C 0.120 3.880 12 C 0.144 3.856 13 H 0.049 0.951 14 C -0.123 4.123 15 C -0.131 4.131 16 C 0.110 3.890 17 N -0.602 5.602 18 C -0.242 4.242 19 H 0.087 0.913 20 C 0.034 3.966 21 N -0.903 5.903 22 Si 0.887 3.113 23 H -0.287 1.287 24 H -0.305 1.305 25 H -0.274 1.274 26 C 0.170 3.830 27 C -0.089 4.089 28 C -0.193 4.193 29 C -0.126 4.126 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.191 0.809 38 H 0.411 0.589 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.024 0.976 47 H 0.263 0.737 48 H 0.126 0.874 49 H 0.093 0.907 50 H 0.101 0.899 51 H 0.102 0.898 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 4.518 -11.136 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.048 3.952 3 C -0.217 4.217 4 N -0.135 5.135 5 N -0.114 5.114 6 C -0.093 4.093 7 C -0.289 4.289 8 C 0.375 3.625 9 O -0.448 6.448 10 N -0.352 5.352 11 C -0.007 4.007 12 C 0.037 3.963 13 H 0.066 0.934 14 C -0.162 4.162 15 C -0.169 4.169 16 C -0.015 4.015 17 N -0.328 5.328 18 C -0.370 4.370 19 H 0.104 0.896 20 C -0.166 4.166 21 N -0.545 5.545 22 Si 0.718 3.282 23 H -0.214 1.214 24 H -0.233 1.233 25 H -0.199 1.199 26 C 0.038 3.962 27 C -0.109 4.109 28 C -0.230 4.230 29 C -0.164 4.164 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.208 0.792 38 H 0.251 0.749 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.042 0.958 47 H 0.073 0.927 48 H 0.143 0.857 49 H 0.111 0.889 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.382 5.287 -11.862 14.470 hybrid contribution -0.241 -1.519 0.196 1.551 sum 6.141 3.768 -11.666 13.712 Atomic orbital electron populations 1.22142 0.93262 1.03139 1.03454 1.21435 0.95668 0.93932 0.84126 1.22118 1.01711 0.94529 1.03380 1.48583 1.37988 1.20998 1.05948 1.77126 1.24138 1.24167 0.85948 1.24113 0.93443 0.91474 1.00243 1.20056 1.13369 1.03840 0.91624 1.17183 0.80007 0.82786 0.82476 1.90667 1.46901 1.51338 1.55860 1.45946 1.50099 1.32108 1.07094 1.21809 0.93309 0.89545 0.96010 1.21337 0.86523 0.96366 0.92072 0.93353 1.22545 0.97785 0.97116 0.98721 1.22734 0.96230 0.99572 0.98394 1.21965 0.95788 0.88390 0.95331 1.44815 1.01990 1.16204 1.69776 1.18299 0.86645 0.87989 1.44038 0.89560 1.25114 0.95684 0.97108 0.98702 1.69769 0.98970 1.34462 1.51309 0.86886 0.76318 0.86626 0.78344 1.21366 1.23342 1.19921 1.20417 0.92628 0.88381 0.94792 1.20336 0.98669 0.99505 0.92345 1.23230 0.98943 1.05219 0.95606 1.22783 1.02480 0.90335 1.00787 0.90767 0.90811 0.92031 0.87669 0.90853 0.90914 0.92127 0.79222 0.74875 0.93238 0.92290 0.91432 0.91379 0.91305 0.91800 0.92576 0.95820 0.92684 0.85673 0.88897 0.88100 0.87965 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.45 37.16 0.35 -1.36 16 2 C 0.15 1.67 3.11 -67.93 -0.21 1.46 16 3 C -0.16 -1.53 9.44 37.16 0.35 -1.18 16 4 N -0.36 -5.44 3.25 -50.16 -0.16 -5.60 16 5 N -0.30 -5.25 12.33 30.86 0.38 -4.87 16 6 C 0.09 1.76 11.50 -16.98 -0.20 1.56 16 7 C -0.27 -5.21 6.12 -105.07 -0.64 -5.85 16 8 C 0.59 12.06 7.81 -12.52 -0.10 11.97 16 9 O -0.57 -12.28 14.81 5.28 0.08 -12.21 16 10 N -0.70 -14.05 4.81 -61.39 -0.30 -14.35 16 11 C 0.12 2.27 5.27 -4.04 -0.02 2.24 16 12 C 0.14 2.66 3.42 -66.95 -0.23 2.43 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C -0.12 -1.87 6.48 -24.83 -0.16 -2.03 16 15 C -0.13 -2.09 7.10 -24.51 -0.17 -2.26 16 16 C 0.11 2.31 4.76 -2.52 -0.01 2.29 16 17 N -0.60 -13.48 2.85 -162.57 -0.46 -13.95 16 18 C -0.24 -6.22 8.52 -15.06 -0.13 -6.35 16 19 H 0.09 2.27 6.64 -52.49 -0.35 1.92 16 20 C 0.03 0.95 5.46 -17.43 -0.10 0.85 16 21 N -0.90 -26.49 13.97 55.49 0.78 -25.72 16 22 Si 0.89 22.74 24.33 -169.99 -4.14 18.60 16 23 H -0.29 -7.10 6.79 56.52 0.38 -6.72 16 24 H -0.31 -8.07 7.11 56.52 0.40 -7.66 16 25 H -0.27 -7.09 6.57 56.52 0.37 -6.72 16 26 C 0.17 2.81 6.45 -81.60 -0.53 2.29 16 27 C -0.09 -1.23 4.83 -91.77 -0.44 -1.68 16 28 C -0.19 -2.12 8.51 -26.70 -0.23 -2.35 16 29 C -0.13 -1.78 9.13 -26.69 -0.24 -2.02 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.11 0.99 5.53 -51.93 -0.29 0.71 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.19 3.39 7.53 -52.49 -0.40 3.00 16 38 H 0.41 8.40 4.47 -40.82 -0.18 8.22 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 41 H 0.07 1.00 7.79 -51.93 -0.40 0.59 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 1.25 7.25 -51.93 -0.38 0.87 16 46 H 0.02 0.54 5.24 -51.93 -0.27 0.26 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 49 H 0.09 1.02 7.33 -51.93 -0.38 0.64 16 50 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 51 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 52 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -32.14 404.43 -9.02 -41.16 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -8.59 Total: 10.81 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.71 Total: 0.01 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: 0.23 Total: -64.48 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.14 Total: 18.60 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.14 -9.02 -41.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028250436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.557 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds