Wall clock time and date at job start Wed Apr 1 2020 04:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46880 * 2 1 4 4 N 1.46505 * 109.47317 * 119.99477 * 2 1 3 5 5 N 1.39933 * 125.75343 * 299.98294 * 4 2 1 6 6 C 1.30455 * 108.89533 * 179.97438 * 5 4 2 7 7 C 1.41288 * 108.01916 * 359.97438 * 6 5 4 8 8 C 1.47432 * 126.40960 * 179.97438 * 7 6 5 9 9 O 1.21600 * 119.99819 * 185.52260 * 8 7 6 10 10 N 1.34773 * 120.00378 * 5.51301 * 8 7 6 11 11 C 1.46499 * 120.00109 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46934 * 185.89678 * 11 10 8 13 13 H 1.09005 * 109.99865 * 295.61183 * 12 11 10 14 14 C 1.54323 * 109.88252 * 174.51670 * 12 11 10 15 15 C 1.55276 * 103.01073 * 218.46692 * 14 12 11 16 16 C 1.54916 * 101.52743 * 35.35790 * 15 14 12 17 17 N 1.47024 * 109.88407 * 56.70609 * 12 11 10 18 18 C 1.36934 * 125.64981 * 298.33844 * 17 12 11 19 19 H 1.08001 * 119.99642 * 333.43042 * 18 17 12 20 20 C 1.38812 * 119.99772 * 153.43525 * 18 17 12 21 21 N 1.31618 * 119.99738 * 162.85358 * 20 18 17 22 22 Si 1.86796 * 120.00246 * 342.85375 * 20 18 17 23 23 H 1.48499 * 109.47148 * 85.24293 * 22 20 18 24 24 H 1.48500 * 109.47390 * 205.24176 * 22 20 18 25 25 H 1.48502 * 109.47237 * 325.24184 * 22 20 18 26 26 C 1.34263 * 125.75295 * 120.26265 * 4 2 1 27 27 C 1.50701 * 126.28776 * 0.02562 * 26 4 2 28 28 C 1.52991 * 117.49978 * 313.42237 * 27 26 4 29 29 C 1.53002 * 117.49472 * 244.76209 * 27 26 4 30 30 H 1.09006 * 109.46687 * 300.00121 * 1 2 3 31 31 H 1.09000 * 109.47169 * 60.00006 * 1 2 3 32 32 H 1.08995 * 109.46835 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47128 * 239.99816 * 2 1 3 34 34 H 1.09000 * 109.47215 * 299.99966 * 3 2 1 35 35 H 1.08995 * 109.47390 * 59.99977 * 3 2 1 36 36 H 1.08999 * 109.47110 * 180.02562 * 3 2 1 37 37 H 1.07993 * 125.98571 * 180.02562 * 6 5 4 38 38 H 0.97008 * 119.99942 * 0.02562 * 10 8 7 39 39 H 1.09000 * 109.46872 * 65.89944 * 11 10 8 40 40 H 1.08993 * 109.47653 * 305.89333 * 11 10 8 41 41 H 1.08998 * 110.72052 * 336.75523 * 14 12 11 42 42 H 1.09003 * 110.72358 * 100.02537 * 14 12 11 43 43 H 1.09005 * 110.95840 * 277.34197 * 15 14 12 44 44 H 1.09000 * 111.10467 * 153.44788 * 15 14 12 45 45 H 1.08990 * 110.36666 * 204.23537 * 16 15 14 46 46 H 1.08998 * 110.36170 * 82.02051 * 16 15 14 47 47 H 0.96999 * 120.00057 * 179.97438 * 21 20 18 48 48 H 1.09002 * 115.54736 * 99.09874 * 27 26 4 49 49 H 1.09004 * 117.49976 * 0.02562 * 28 27 26 50 50 H 1.09008 * 117.49770 * 145.02662 * 28 27 26 51 51 H 1.08998 * 117.49643 * 214.97938 * 29 27 26 52 52 H 1.08996 * 117.49855 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 7 1.7560 -0.3186 2.5195 6 6 2.3500 -1.1596 3.3205 7 6 3.0242 -2.1157 2.5284 8 6 3.8262 -3.2508 3.0203 9 8 4.4408 -3.9466 2.2349 10 7 3.8784 -3.5172 4.3404 11 6 4.6758 -4.6448 4.8292 12 6 4.4489 -4.8162 6.3325 13 1 4.8190 -3.9416 6.8675 14 6 5.1750 -6.0830 6.8318 15 6 4.1801 -6.6702 7.8694 16 6 2.8164 -6.3227 7.2217 17 7 3.0155 -4.9989 6.6042 18 6 2.0290 -4.0898 6.3297 19 1 2.2617 -3.0359 6.2901 20 6 0.7299 -4.5229 6.1023 21 7 -0.2701 -3.6700 6.1736 22 14 0.4009 -6.3160 5.6950 23 1 0.2836 -7.0959 6.9533 24 1 -0.8645 -6.4248 4.9255 25 1 1.5220 -6.8528 4.8825 26 6 2.7977 -1.7838 1.2078 27 6 3.3243 -2.5165 0.0008 28 6 2.3364 -2.8226 -1.1265 29 6 2.8397 -3.9505 -0.2222 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4426 -0.0005 37 1 2.3291 -1.1306 4.3998 38 1 3.3880 -2.9623 4.9669 39 1 5.7319 -4.4516 4.6408 40 1 4.3747 -5.5548 4.3103 41 1 5.3340 -6.7845 6.0129 42 1 6.1207 -5.8233 7.3076 43 1 4.2898 -6.1787 8.8362 44 1 4.3037 -7.7489 7.9649 45 1 2.0370 -6.2733 7.9820 46 1 2.5583 -7.0606 6.4621 47 1 -1.1778 -3.9725 6.0144 48 1 4.3515 -2.2830 -0.2797 49 1 1.3054 -2.4937 -0.9954 50 1 2.7136 -2.7910 -2.1488 51 1 3.5478 -4.6602 -0.6499 52 1 2.1403 -4.3640 0.5043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028250436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:49 Heat of formation + Delta-G solvation = 69.118041 kcal Electronic energy + Delta-G solvation = -32207.033927 eV Core-core repulsion = 28208.902992 eV Total energy + Delta-G solvation = -3998.130935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.59222 -40.35579 -39.19608 -38.03891 -36.53220 -35.25066 -34.62549 -31.78285 -31.72711 -31.46295 -30.18564 -28.26009 -26.71499 -25.81977 -24.51103 -24.11723 -23.08258 -23.04892 -22.23185 -21.25266 -20.40340 -20.20334 -19.02444 -18.21805 -17.33181 -17.23959 -17.00319 -16.68966 -16.46548 -16.00215 -15.58198 -15.51771 -15.36561 -15.18247 -14.93395 -14.61476 -14.46540 -14.24299 -14.08876 -13.78291 -13.37521 -13.19168 -13.13054 -13.06198 -12.99157 -12.77150 -12.65267 -12.59789 -12.46541 -12.36308 -12.27713 -12.05707 -11.89445 -11.76442 -11.60001 -11.47772 -11.27621 -11.22771 -10.78449 -10.66159 -10.34491 -9.88444 -9.45395 -8.92531 -8.15179 -5.44525 0.52868 1.19580 1.24453 1.34739 1.35074 1.41160 2.39367 2.47931 2.66033 2.74485 3.16932 3.31907 3.34804 3.40589 3.83070 3.86993 3.89361 3.91308 3.92609 4.03021 4.06921 4.17523 4.18549 4.28675 4.34598 4.42081 4.50761 4.61053 4.63466 4.67476 4.72403 4.75005 4.76769 4.82041 4.84406 4.91554 4.94866 5.03599 5.04730 5.05551 5.14158 5.17738 5.18117 5.20611 5.31356 5.44909 5.51361 5.73992 5.79235 5.96428 6.12789 6.55079 6.79973 6.86400 7.49833 7.58017 8.18594 9.03235 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.003700 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.168150 B = 7566.640821 C = 8206.380805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 C -0.154 4.154 4 N -0.344 5.344 5 N -0.310 5.310 6 C 0.081 3.919 7 C -0.310 4.310 8 C 0.584 3.416 9 O -0.583 6.583 10 N -0.706 5.706 11 C 0.122 3.878 12 C 0.140 3.860 13 H 0.059 0.941 14 C -0.113 4.113 15 C -0.117 4.117 16 C 0.098 3.902 17 N -0.619 5.619 18 C -0.208 4.208 19 H 0.075 0.925 20 C -0.019 4.019 21 N -0.945 5.945 22 Si 0.931 3.069 23 H -0.275 1.275 24 H -0.321 1.321 25 H -0.281 1.281 26 C 0.176 3.824 27 C -0.103 4.103 28 C -0.152 4.152 29 C -0.147 4.147 30 H 0.051 0.949 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.184 0.816 38 H 0.407 0.593 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.037 0.963 46 H 0.010 0.990 47 H 0.256 0.744 48 H 0.139 0.861 49 H 0.095 0.905 50 H 0.141 0.859 51 H 0.112 0.888 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.090 4.400 -12.910 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 C -0.211 4.211 4 N -0.124 5.124 5 N -0.130 5.130 6 C -0.106 4.106 7 C -0.325 4.325 8 C 0.372 3.628 9 O -0.466 6.466 10 N -0.358 5.358 11 C -0.004 4.004 12 C 0.034 3.966 13 H 0.077 0.923 14 C -0.151 4.151 15 C -0.155 4.155 16 C -0.026 4.026 17 N -0.344 5.344 18 C -0.337 4.337 19 H 0.092 0.908 20 C -0.215 4.215 21 N -0.592 5.592 22 Si 0.763 3.237 23 H -0.201 1.201 24 H -0.251 1.251 25 H -0.207 1.207 26 C 0.042 3.958 27 C -0.122 4.122 28 C -0.188 4.188 29 C -0.185 4.185 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.150 0.850 34 H 0.128 0.872 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.201 0.799 38 H 0.246 0.754 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.056 0.944 46 H 0.028 0.972 47 H 0.065 0.935 48 H 0.157 0.843 49 H 0.113 0.887 50 H 0.159 0.841 51 H 0.130 0.870 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.482 5.154 -13.619 16.852 hybrid contribution -0.815 -1.414 0.697 1.775 sum 7.667 3.740 -12.922 15.484 Atomic orbital electron populations 1.22147 0.92692 1.02504 1.04290 1.21988 0.96190 0.94994 0.83120 1.22103 1.01511 0.93292 1.04231 1.49004 1.36744 1.20498 1.06127 1.77046 1.24275 1.24368 0.87291 1.24069 0.94122 0.92057 1.00311 1.20142 1.14958 1.04275 0.93095 1.17433 0.79898 0.83018 0.82411 1.90630 1.47764 1.52074 1.56094 1.46022 1.50282 1.32360 1.07106 1.21830 0.94293 0.88171 0.96059 1.21583 0.84401 0.98866 0.91764 0.92299 1.22581 0.98660 0.95102 0.98801 1.22697 0.92572 1.01652 0.98550 1.22070 0.98669 0.87155 0.94731 1.45029 1.03173 1.16180 1.70065 1.18351 0.86989 0.88320 1.40030 0.90784 1.25540 0.96149 0.99094 1.00726 1.69868 0.98960 1.35564 1.54810 0.86172 0.74888 0.84466 0.78166 1.20077 1.25060 1.20735 1.20830 0.91653 0.88273 0.95004 1.20479 1.00149 0.98907 0.92696 1.23368 0.98328 1.00790 0.96354 1.22711 1.02883 0.91096 1.01845 0.92988 0.86907 0.93370 0.85046 0.87222 0.92814 0.92381 0.79882 0.75384 0.90918 0.94660 0.90831 0.87542 0.90051 0.88900 0.94422 0.97238 0.93453 0.84345 0.88698 0.84089 0.86995 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.45 71.98 0.68 -2.40 16 2 C 0.14 2.76 3.11 44.99 0.14 2.90 16 3 C -0.15 -2.59 9.44 71.98 0.68 -1.91 16 4 N -0.34 -10.48 3.25 -312.61 -1.02 -11.49 16 5 N -0.31 -11.45 12.33 -56.28 -0.69 -12.15 16 6 C 0.08 3.21 11.50 85.65 0.99 4.19 16 7 C -0.31 -12.27 6.12 -20.15 -0.12 -12.39 16 8 C 0.58 24.79 7.81 86.67 0.68 25.47 16 9 O -0.58 -25.80 14.81 -4.03 -0.06 -25.86 16 10 N -0.71 -29.18 4.81 -466.39 -2.24 -31.43 16 11 C 0.12 4.58 5.27 86.38 0.46 5.04 16 12 C 0.14 4.94 3.42 45.34 0.15 5.10 16 13 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 14 C -0.11 -3.03 6.48 31.82 0.21 -2.82 16 15 C -0.12 -3.33 7.10 32.03 0.23 -3.10 16 16 C 0.10 4.03 4.76 86.86 0.41 4.44 16 17 N -0.62 -27.63 2.85 -668.24 -1.90 -29.53 16 18 C -0.21 -10.97 8.52 84.03 0.72 -10.25 16 19 H 0.07 4.06 6.64 -2.91 -0.02 4.04 16 20 C -0.02 -1.12 5.46 84.86 0.46 -0.65 16 21 N -0.95 -58.14 13.97 21.65 0.30 -57.84 16 22 Si 0.93 48.65 24.33 68.60 1.67 50.32 16 23 H -0.27 -13.56 6.79 99.48 0.68 -12.88 16 24 H -0.32 -17.43 7.11 99.48 0.71 -16.72 16 25 H -0.28 -14.79 6.57 99.48 0.65 -14.14 16 26 C 0.18 5.87 6.45 42.14 0.27 6.14 16 27 C -0.10 -2.72 4.83 -11.54 -0.06 -2.77 16 28 C -0.15 -2.88 8.51 30.62 0.26 -2.62 16 29 C -0.15 -4.09 9.13 30.62 0.28 -3.81 16 30 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.13 1.99 5.53 -2.39 -0.01 1.98 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.18 7.18 7.53 -2.91 -0.02 7.16 16 38 H 0.41 17.40 4.47 -92.70 -0.41 16.98 16 39 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.03 1.49 8.04 -2.39 -0.02 1.47 16 41 H 0.07 1.92 7.79 -2.39 -0.02 1.90 16 42 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.04 1.66 7.25 -2.39 -0.02 1.65 16 46 H 0.01 0.44 5.24 -2.39 -0.01 0.43 16 47 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 48 H 0.14 3.32 8.14 -2.39 -0.02 3.30 16 49 H 0.09 1.81 7.33 -2.39 -0.02 1.79 16 50 H 0.14 1.63 8.14 -2.38 -0.02 1.61 16 51 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 52 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -74.77 404.43 2.91 -71.86 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: 0.42 Total: 35.58 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 6.43 Total: 10.54 kcal Atomic # 7 Polarization: -136.89 SS G_CDS: -5.55 Total: -142.44 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.06 Total: -25.86 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 1.67 Total: 50.32 kcal Total: -74.77 2.91 -71.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028250436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.979 kcal (2) G-P(sol) polarization free energy of solvation -74.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds