Wall clock time and date at job start Wed Apr 1 2020 04:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47111 * 2 1 4 4 N 1.46499 * 109.47268 * 120.00172 * 2 1 3 5 5 N 1.39941 * 125.75143 * 300.02422 * 4 2 1 6 6 C 1.30448 * 108.89550 * 179.72886 * 5 4 2 7 7 C 1.41299 * 108.02158 * 0.38315 * 6 5 4 8 8 C 1.47430 * 126.41389 * 179.87867 * 7 6 5 9 9 O 1.21601 * 119.99645 * 185.33416 * 8 7 6 10 10 N 1.34772 * 119.99918 * 5.33092 * 8 7 6 11 11 C 1.46502 * 120.00166 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47258 * 185.07423 * 11 10 8 13 13 H 1.08998 * 109.87940 * 305.10210 * 12 11 10 14 14 C 1.54327 * 109.88351 * 66.12178 * 12 11 10 15 15 C 1.55161 * 102.94268 * 141.60875 * 14 12 11 16 16 C 1.54905 * 101.58089 * 324.50030 * 15 14 12 17 17 N 1.47028 * 109.88335 * 183.93053 * 12 11 10 18 18 C 1.36934 * 125.64777 * 61.60044 * 17 12 11 19 19 H 1.08000 * 120.00074 * 11.34890 * 18 17 12 20 20 C 1.38810 * 119.99877 * 191.33944 * 18 17 12 21 21 N 1.31624 * 120.00207 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00074 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46755 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47539 * 119.99793 * 22 20 18 25 25 H 1.48502 * 109.47005 * 240.00024 * 22 20 18 26 26 C 1.34252 * 125.75586 * 119.99372 * 4 2 1 27 27 C 1.50708 * 126.29194 * 0.04717 * 26 4 2 28 28 C 1.52996 * 117.49415 * 312.11965 * 27 26 4 29 29 C 1.52998 * 117.49759 * 243.49561 * 27 26 4 30 30 H 1.08998 * 109.46866 * 300.00430 * 1 2 3 31 31 H 1.09003 * 109.47347 * 59.99482 * 1 2 3 32 32 H 1.08995 * 109.47310 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46653 * 240.00411 * 2 1 3 34 34 H 1.09003 * 109.46660 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47178 * 299.99552 * 3 2 1 36 36 H 1.08993 * 109.47370 * 60.00451 * 3 2 1 37 37 H 1.07999 * 125.99298 * 180.25680 * 6 5 4 38 38 H 0.97004 * 120.00176 * 0.02562 * 10 8 7 39 39 H 1.09003 * 109.46780 * 65.07523 * 11 10 8 40 40 H 1.08999 * 109.47167 * 305.07408 * 11 10 8 41 41 H 1.08999 * 110.72065 * 259.97049 * 14 12 11 42 42 H 1.08992 * 110.71963 * 23.24322 * 14 12 11 43 43 H 1.09000 * 111.00198 * 82.57639 * 15 14 12 44 44 H 1.08997 * 111.00269 * 206.42371 * 15 14 12 45 45 H 1.09002 * 110.36312 * 278.16800 * 16 15 14 46 46 H 1.09006 * 110.36937 * 155.85097 * 16 15 14 47 47 H 0.97001 * 119.99697 * 180.02562 * 21 20 18 48 48 H 1.08993 * 115.54810 * 97.82696 * 27 26 4 49 49 H 1.08997 * 117.50250 * 0.02562 * 28 27 26 50 50 H 1.09002 * 117.49442 * 145.02231 * 28 27 26 51 51 H 1.08992 * 117.49966 * 214.97585 * 29 27 26 52 52 H 1.09001 * 117.49961 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7552 -0.3193 2.5194 6 6 2.3450 -1.1632 3.3203 7 6 3.0251 -2.1153 2.5282 8 6 3.8267 -3.2507 3.0200 9 8 4.4437 -3.9446 2.2348 10 7 3.8757 -3.5195 4.3397 11 6 4.6719 -4.6480 4.8284 12 6 4.4572 -4.8093 6.3346 13 1 4.6795 -3.8712 6.8432 14 6 2.9978 -5.2254 6.6152 15 6 3.1436 -6.2406 7.7795 16 6 4.4737 -6.9451 7.4131 17 7 5.3232 -5.8791 6.8514 18 6 6.6921 -5.8849 6.8161 19 1 7.2293 -4.9857 6.5527 20 6 7.3893 -7.0463 7.1190 21 7 6.7347 -8.1423 7.4397 22 14 9.2567 -7.0540 7.0715 23 1 9.7475 -5.7068 6.6849 24 1 9.7846 -7.4074 8.4137 25 1 9.7224 -8.0541 6.0773 26 6 2.7934 -1.7868 1.2076 27 6 3.3151 -2.5231 0.0005 28 6 2.3170 -2.8538 -1.1110 29 6 2.8477 -3.9656 -0.2035 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6768 1.9563 0.8900 37 1 2.3199 -1.1375 4.3997 38 1 3.3833 -2.9661 4.9660 39 1 5.7272 -4.4611 4.6298 40 1 4.3618 -5.5596 4.3176 41 1 2.4044 -4.3654 6.9256 42 1 2.5579 -5.7031 5.7399 43 1 3.2245 -5.7272 8.7376 44 1 2.3152 -6.9489 7.7863 45 1 4.2988 -7.7224 6.6692 46 1 4.9365 -7.3691 8.3043 47 1 7.2220 -8.9538 7.6517 48 1 4.3351 -2.2780 -0.2950 49 1 1.2833 -2.5385 -0.9694 50 1 2.6805 -2.8262 -2.1382 51 1 3.5601 -4.6693 -0.6338 52 1 2.1626 -4.3819 0.5350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028250437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:53 Heat of formation + Delta-G solvation = 83.805427 kcal Electronic energy + Delta-G solvation = -30958.416471 eV Core-core repulsion = 26960.922429 eV Total energy + Delta-G solvation = -3997.494042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71615 -38.93408 -37.49046 -37.22068 -35.86457 -34.04805 -32.43483 -30.87063 -30.33126 -29.45584 -28.36388 -27.74985 -25.07421 -24.33823 -23.40166 -23.22859 -22.36680 -21.80185 -20.23963 -19.75296 -19.50486 -19.16536 -17.55237 -16.74939 -16.23108 -15.99534 -15.53453 -15.22501 -14.93432 -14.71727 -14.60172 -14.53319 -14.16243 -13.79544 -13.67663 -13.28262 -13.21472 -12.84347 -12.63344 -12.60761 -12.18267 -12.01342 -11.89587 -11.85001 -11.81864 -11.67347 -11.63257 -11.26799 -11.18904 -10.91232 -10.77770 -10.71675 -10.40802 -10.17092 -10.05060 -9.86659 -9.79583 -9.64503 -9.53812 -9.41287 -8.75033 -8.58389 -8.37029 -6.82159 -5.71626 -3.08006 1.46417 2.08682 2.17714 3.41877 3.48290 3.49376 3.50546 3.68348 3.75304 4.07584 4.15097 4.44311 4.52044 4.53453 4.59194 4.71899 4.76504 4.96661 5.08492 5.15483 5.21894 5.24533 5.27847 5.32852 5.38578 5.40601 5.46205 5.55484 5.67019 5.68639 5.71497 5.74832 5.80441 5.86613 5.88372 5.99431 6.13607 6.19670 6.30676 6.35133 6.51546 6.61685 6.69534 6.71351 6.81483 6.91758 7.14826 7.45361 7.58304 7.63576 7.84039 8.00503 8.30113 8.72132 9.21676 9.82355 10.48690 11.39271 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.002426 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.355309 B =11537.262208 C =12122.472162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.161 4.161 4 N -0.351 5.351 5 N -0.295 5.295 6 C 0.078 3.922 7 C -0.281 4.281 8 C 0.586 3.414 9 O -0.542 6.542 10 N -0.721 5.721 11 C 0.113 3.887 12 C 0.152 3.848 13 H 0.037 0.963 14 C -0.125 4.125 15 C -0.149 4.149 16 C 0.170 3.830 17 N -0.590 5.590 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.179 3.821 27 C -0.096 4.096 28 C -0.191 4.191 29 C -0.123 4.123 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.189 0.811 38 H 0.392 0.608 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.022 0.978 46 H 0.079 0.921 47 H 0.252 0.748 48 H 0.129 0.871 49 H 0.092 0.908 50 H 0.103 0.897 51 H 0.105 0.895 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.647 16.271 -15.160 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 C -0.219 4.219 4 N -0.131 5.131 5 N -0.114 5.114 6 C -0.109 4.109 7 C -0.296 4.296 8 C 0.372 3.628 9 O -0.421 6.421 10 N -0.372 5.372 11 C -0.012 4.012 12 C 0.043 3.957 13 H 0.055 0.945 14 C -0.163 4.163 15 C -0.188 4.188 16 C 0.045 3.955 17 N -0.314 5.314 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.201 4.201 21 N -0.564 5.564 22 Si 0.741 3.259 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.047 3.953 27 C -0.116 4.116 28 C -0.228 4.228 29 C -0.161 4.161 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.205 0.795 38 H 0.225 0.775 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.041 0.959 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.146 0.854 49 H 0.111 0.889 50 H 0.121 0.879 51 H 0.124 0.876 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.796 16.728 -15.836 27.377 hybrid contribution 1.309 -0.456 0.402 1.444 sum -13.486 16.272 -15.433 26.170 Atomic orbital electron populations 1.22139 0.93117 1.03043 1.03607 1.21509 0.95711 0.94138 0.83954 1.22129 1.01946 0.94273 1.03519 1.48623 1.37993 1.20642 1.05848 1.77092 1.24457 1.23543 0.86279 1.24025 0.94787 0.92119 1.00015 1.20132 1.13474 1.04234 0.91795 1.17200 0.80371 0.82823 0.82415 1.90763 1.45312 1.50599 1.55383 1.45889 1.51269 1.33254 1.06757 1.22162 0.95142 0.87379 0.96477 1.21117 0.90495 0.93460 0.90582 0.94535 1.22602 0.96049 0.98778 0.98907 1.23011 1.00142 0.98279 0.97325 1.21526 0.86128 0.89393 0.98456 1.44506 1.01486 1.18472 1.66939 1.19056 0.79937 0.95682 1.41004 0.90505 1.24861 0.98139 0.95360 1.01772 1.69948 1.33451 1.00847 1.52201 0.86064 0.85161 0.77480 0.77195 1.20402 1.21777 1.21675 1.20519 0.91846 0.87912 0.94978 1.20413 0.99116 0.99508 0.92552 1.23226 0.98474 1.05146 0.95948 1.22786 1.02364 0.90276 1.00670 0.90904 0.90541 0.92051 0.87387 0.91954 0.90584 0.90958 0.79462 0.77478 0.91664 0.91743 0.92438 0.91849 0.92335 0.92430 0.95949 0.90288 0.93735 0.85358 0.88944 0.87900 0.87636 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.45 37.16 0.35 -0.67 16 2 C 0.15 1.10 3.15 -67.93 -0.21 0.89 16 3 C -0.16 -1.06 9.45 37.16 0.35 -0.71 16 4 N -0.35 -3.80 3.25 -50.16 -0.16 -3.96 16 5 N -0.29 -3.55 12.33 30.86 0.38 -3.17 16 6 C 0.08 0.92 11.50 -16.98 -0.20 0.72 16 7 C -0.28 -3.88 6.12 -105.06 -0.64 -4.52 16 8 C 0.59 9.65 7.81 -12.52 -0.10 9.56 16 9 O -0.54 -10.64 14.76 5.28 0.08 -10.56 16 10 N -0.72 -11.23 5.34 -61.39 -0.33 -11.56 16 11 C 0.11 2.21 5.09 -4.04 -0.02 2.19 16 12 C 0.15 3.01 3.20 -66.95 -0.21 2.80 16 13 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 14 C -0.13 -2.11 6.18 -24.89 -0.15 -2.26 16 15 C -0.15 -2.76 7.09 -24.58 -0.17 -2.93 16 16 C 0.17 4.08 5.47 -2.53 -0.01 4.06 16 17 N -0.59 -14.70 3.13 -162.57 -0.51 -15.21 16 18 C -0.23 -6.29 9.75 -15.06 -0.15 -6.44 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 21 N -0.92 -26.84 10.45 55.49 0.58 -26.26 16 22 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.18 2.22 6.45 -81.60 -0.53 1.69 16 27 C -0.10 -1.05 4.83 -91.77 -0.44 -1.49 16 28 C -0.19 -1.52 8.53 -26.73 -0.23 -1.75 16 29 C -0.12 -1.36 9.05 -26.73 -0.24 -1.60 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.11 0.67 5.64 -51.93 -0.29 0.38 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.19 1.63 7.53 -52.49 -0.40 1.24 16 38 H 0.39 4.92 7.36 -40.82 -0.30 4.62 16 39 H 0.07 1.45 7.88 -51.93 -0.41 1.04 16 40 H 0.06 1.40 8.04 -51.93 -0.42 0.98 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.07 7.78 -51.93 -0.40 0.66 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.02 0.59 8.12 -51.93 -0.42 0.16 16 46 H 0.08 2.12 6.69 -51.93 -0.35 1.77 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 49 H 0.09 0.68 7.46 -51.93 -0.39 0.30 16 50 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 52 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 415.33 15.07 6.26 6.26 Total: -1.00 -33.15 415.33 -10.27 -43.42 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -8.84 Total: 4.44 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.71 Total: -0.67 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.04 Total: -60.16 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.15 -10.27 -43.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028250437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.226 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds