Wall clock time and date at job start Wed Apr 1 2020 04:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47111 * 2 1 4 4 N 1.46499 * 109.47268 * 120.00172 * 2 1 3 5 5 N 1.39941 * 125.75143 * 300.02422 * 4 2 1 6 6 C 1.30448 * 108.89550 * 179.72886 * 5 4 2 7 7 C 1.41299 * 108.02158 * 0.38315 * 6 5 4 8 8 C 1.47430 * 126.41389 * 179.87867 * 7 6 5 9 9 O 1.21601 * 119.99645 * 185.33416 * 8 7 6 10 10 N 1.34772 * 119.99918 * 5.33092 * 8 7 6 11 11 C 1.46502 * 120.00166 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47258 * 185.07423 * 11 10 8 13 13 H 1.08998 * 109.87940 * 305.10210 * 12 11 10 14 14 C 1.54327 * 109.88351 * 66.12178 * 12 11 10 15 15 C 1.55161 * 102.94268 * 141.60875 * 14 12 11 16 16 C 1.54905 * 101.58089 * 324.50030 * 15 14 12 17 17 N 1.47028 * 109.88335 * 183.93053 * 12 11 10 18 18 C 1.36934 * 125.64777 * 61.60044 * 17 12 11 19 19 H 1.08000 * 120.00074 * 11.34890 * 18 17 12 20 20 C 1.38810 * 119.99877 * 191.33944 * 18 17 12 21 21 N 1.31624 * 120.00207 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00074 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46755 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47539 * 119.99793 * 22 20 18 25 25 H 1.48502 * 109.47005 * 240.00024 * 22 20 18 26 26 C 1.34252 * 125.75586 * 119.99372 * 4 2 1 27 27 C 1.50708 * 126.29194 * 0.04717 * 26 4 2 28 28 C 1.52996 * 117.49415 * 312.11965 * 27 26 4 29 29 C 1.52998 * 117.49759 * 243.49561 * 27 26 4 30 30 H 1.08998 * 109.46866 * 300.00430 * 1 2 3 31 31 H 1.09003 * 109.47347 * 59.99482 * 1 2 3 32 32 H 1.08995 * 109.47310 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46653 * 240.00411 * 2 1 3 34 34 H 1.09003 * 109.46660 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47178 * 299.99552 * 3 2 1 36 36 H 1.08993 * 109.47370 * 60.00451 * 3 2 1 37 37 H 1.07999 * 125.99298 * 180.25680 * 6 5 4 38 38 H 0.97004 * 120.00176 * 0.02562 * 10 8 7 39 39 H 1.09003 * 109.46780 * 65.07523 * 11 10 8 40 40 H 1.08999 * 109.47167 * 305.07408 * 11 10 8 41 41 H 1.08999 * 110.72065 * 259.97049 * 14 12 11 42 42 H 1.08992 * 110.71963 * 23.24322 * 14 12 11 43 43 H 1.09000 * 111.00198 * 82.57639 * 15 14 12 44 44 H 1.08997 * 111.00269 * 206.42371 * 15 14 12 45 45 H 1.09002 * 110.36312 * 278.16800 * 16 15 14 46 46 H 1.09006 * 110.36937 * 155.85097 * 16 15 14 47 47 H 0.97001 * 119.99697 * 180.02562 * 21 20 18 48 48 H 1.08993 * 115.54810 * 97.82696 * 27 26 4 49 49 H 1.08997 * 117.50250 * 0.02562 * 28 27 26 50 50 H 1.09002 * 117.49442 * 145.02231 * 28 27 26 51 51 H 1.08992 * 117.49966 * 214.97585 * 29 27 26 52 52 H 1.09001 * 117.49961 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7552 -0.3193 2.5194 6 6 2.3450 -1.1632 3.3203 7 6 3.0251 -2.1153 2.5282 8 6 3.8267 -3.2507 3.0200 9 8 4.4437 -3.9446 2.2348 10 7 3.8757 -3.5195 4.3397 11 6 4.6719 -4.6480 4.8284 12 6 4.4572 -4.8093 6.3346 13 1 4.6795 -3.8712 6.8432 14 6 2.9978 -5.2254 6.6152 15 6 3.1436 -6.2406 7.7795 16 6 4.4737 -6.9451 7.4131 17 7 5.3232 -5.8791 6.8514 18 6 6.6921 -5.8849 6.8161 19 1 7.2293 -4.9857 6.5527 20 6 7.3893 -7.0463 7.1190 21 7 6.7347 -8.1423 7.4397 22 14 9.2567 -7.0540 7.0715 23 1 9.7475 -5.7068 6.6849 24 1 9.7846 -7.4074 8.4137 25 1 9.7224 -8.0541 6.0773 26 6 2.7934 -1.7868 1.2076 27 6 3.3151 -2.5231 0.0005 28 6 2.3170 -2.8538 -1.1110 29 6 2.8477 -3.9656 -0.2035 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6768 1.9563 0.8900 37 1 2.3199 -1.1375 4.3997 38 1 3.3833 -2.9661 4.9660 39 1 5.7272 -4.4611 4.6298 40 1 4.3618 -5.5596 4.3176 41 1 2.4044 -4.3654 6.9256 42 1 2.5579 -5.7031 5.7399 43 1 3.2245 -5.7272 8.7376 44 1 2.3152 -6.9489 7.7863 45 1 4.2988 -7.7224 6.6692 46 1 4.9365 -7.3691 8.3043 47 1 7.2220 -8.9538 7.6517 48 1 4.3351 -2.2780 -0.2950 49 1 1.2833 -2.5385 -0.9694 50 1 2.6805 -2.8262 -2.1382 51 1 3.5601 -4.6693 -0.6338 52 1 2.1626 -4.3819 0.5350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028250437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:52 Heat of formation + Delta-G solvation = 63.474680 kcal Electronic energy + Delta-G solvation = -30959.298079 eV Core-core repulsion = 26960.922429 eV Total energy + Delta-G solvation = -3998.375649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.62214 -40.33437 -39.10712 -38.04185 -36.53154 -35.59667 -34.36646 -31.76411 -31.56676 -31.13136 -29.85704 -28.23592 -26.76703 -25.93497 -24.49448 -24.10773 -23.08454 -22.91243 -21.96410 -21.23533 -20.63660 -20.20555 -18.87148 -18.28560 -17.30679 -17.28668 -16.77629 -16.46702 -16.19092 -15.88356 -15.77403 -15.61413 -15.46054 -15.33047 -14.57586 -14.53420 -14.41981 -13.94691 -13.80776 -13.63356 -13.36422 -13.17647 -13.11251 -13.05162 -12.95502 -12.84951 -12.67868 -12.58793 -12.45416 -12.34889 -12.01033 -11.96879 -11.82059 -11.67430 -11.48290 -11.43578 -11.38273 -11.22707 -10.78126 -10.68184 -10.37041 -10.03901 -9.54520 -8.86327 -7.85353 -5.22777 0.49055 1.19513 1.30190 1.44347 1.46276 1.55773 2.32573 2.52259 2.53490 2.72539 3.32826 3.33850 3.38358 3.75549 3.84408 3.88440 3.91140 3.92816 3.99288 4.03042 4.06250 4.17443 4.24695 4.29806 4.39714 4.50396 4.56979 4.63033 4.66604 4.69972 4.76894 4.79007 4.84559 4.84681 4.96142 5.00817 5.04477 5.05198 5.15555 5.17806 5.17992 5.22830 5.25530 5.43583 5.47709 5.50104 5.64078 5.69957 5.80680 5.90861 6.25403 6.53640 6.77485 7.11060 7.43908 7.78442 8.43343 9.24469 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.002426 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.355309 B =11537.262208 C =12122.472162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 C -0.156 4.156 4 N -0.343 5.343 5 N -0.307 5.307 6 C 0.083 3.917 7 C -0.309 4.309 8 C 0.585 3.415 9 O -0.581 6.581 10 N -0.707 5.707 11 C 0.136 3.864 12 C 0.148 3.852 13 H 0.052 0.948 14 C -0.112 4.112 15 C -0.134 4.134 16 C 0.171 3.829 17 N -0.611 5.611 18 C -0.234 4.234 19 H 0.077 0.923 20 C -0.063 4.063 21 N -0.947 5.947 22 Si 0.971 3.029 23 H -0.268 1.268 24 H -0.288 1.288 25 H -0.295 1.295 26 C 0.180 3.820 27 C -0.112 4.112 28 C -0.150 4.150 29 C -0.145 4.145 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.125 0.875 34 H 0.051 0.949 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.216 0.784 38 H 0.411 0.589 39 H 0.031 0.969 40 H 0.035 0.965 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.081 0.919 45 H -0.012 1.012 46 H 0.043 0.957 47 H 0.247 0.753 48 H 0.126 0.874 49 H 0.104 0.896 50 H 0.130 0.870 51 H 0.099 0.901 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.730 19.157 -16.373 30.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 C -0.214 4.214 4 N -0.122 5.122 5 N -0.126 5.126 6 C -0.105 4.105 7 C -0.324 4.324 8 C 0.373 3.627 9 O -0.462 6.462 10 N -0.359 5.359 11 C 0.010 3.990 12 C 0.041 3.959 13 H 0.070 0.930 14 C -0.150 4.150 15 C -0.172 4.172 16 C 0.046 3.954 17 N -0.336 5.336 18 C -0.363 4.363 19 H 0.095 0.905 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.800 3.200 23 H -0.192 1.192 24 H -0.215 1.215 25 H -0.223 1.223 26 C 0.046 3.954 27 C -0.132 4.132 28 C -0.187 4.187 29 C -0.183 4.183 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.232 0.768 38 H 0.247 0.753 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.122 0.878 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.006 0.994 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.143 0.857 49 H 0.122 0.878 50 H 0.148 0.852 51 H 0.118 0.882 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.932 19.693 -17.048 31.067 hybrid contribution 1.916 -1.282 0.692 2.407 sum -15.016 18.411 -16.356 28.844 Atomic orbital electron populations 1.22121 0.91945 1.02904 1.04383 1.21939 0.96647 0.94573 0.83147 1.22113 1.01250 0.93708 1.04321 1.48954 1.36929 1.19961 1.06395 1.77070 1.24765 1.23796 0.86920 1.24425 0.93731 0.91026 1.01275 1.19968 1.14964 1.04377 0.93079 1.17610 0.79940 0.83056 0.82074 1.90740 1.47025 1.52143 1.56320 1.45575 1.50870 1.32356 1.07105 1.21592 0.93629 0.87559 0.96258 1.21324 0.91811 0.92610 0.90140 0.93046 1.22587 0.94184 0.99958 0.98223 1.22875 0.97283 0.98636 0.98403 1.21338 0.88862 0.89315 0.95915 1.44770 1.01375 1.19734 1.67681 1.19351 0.81716 0.95606 1.39651 0.90512 1.25633 1.02218 0.95314 1.02462 1.70155 1.34615 1.01151 1.53660 0.85110 0.80447 0.77583 0.76841 1.19225 1.21518 1.22272 1.20736 0.91430 0.88175 0.95049 1.20462 0.99961 0.99156 0.93639 1.23328 0.98281 1.00897 0.96176 1.22703 1.02821 0.90762 1.01979 0.92257 0.87635 0.92609 0.85751 0.92983 0.87668 0.92261 0.76779 0.75280 0.95071 0.94631 0.87751 0.91876 0.91101 0.90039 0.99380 0.93820 0.94387 0.85669 0.87760 0.85174 0.88243 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.45 71.98 0.68 -0.82 16 2 C 0.14 1.66 3.15 44.99 0.14 1.80 16 3 C -0.16 -1.65 9.45 71.98 0.68 -0.97 16 4 N -0.34 -6.80 3.25 -312.62 -1.02 -7.82 16 5 N -0.31 -6.83 12.33 -56.27 -0.69 -7.52 16 6 C 0.08 1.80 11.50 85.65 0.99 2.78 16 7 C -0.31 -8.30 6.12 -20.15 -0.12 -8.43 16 8 C 0.58 19.47 7.81 86.67 0.68 20.15 16 9 O -0.58 -23.75 14.76 -4.04 -0.06 -23.80 16 10 N -0.71 -21.68 5.34 -466.38 -2.49 -24.17 16 11 C 0.14 5.43 5.09 86.38 0.44 5.87 16 12 C 0.15 5.79 3.20 45.34 0.15 5.93 16 13 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 14 C -0.11 -3.48 6.18 31.79 0.20 -3.28 16 15 C -0.13 -4.71 7.09 31.99 0.23 -4.48 16 16 C 0.17 8.44 5.47 86.85 0.48 8.91 16 17 N -0.61 -31.14 3.13 -668.26 -2.09 -33.23 16 18 C -0.23 -13.24 9.75 84.03 0.82 -12.42 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.06 -3.66 5.48 84.86 0.46 -3.19 16 21 N -0.95 -57.83 10.45 21.65 0.23 -57.60 16 22 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 C 0.18 4.28 6.45 42.15 0.27 4.55 16 27 C -0.11 -2.36 4.83 -11.54 -0.06 -2.42 16 28 C -0.15 -2.03 8.53 30.59 0.26 -1.77 16 29 C -0.14 -3.20 9.05 30.60 0.28 -2.92 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.12 1.10 5.64 -2.38 -0.01 1.09 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.22 3.12 7.53 -2.91 -0.02 3.10 16 38 H 0.41 9.42 7.36 -92.71 -0.68 8.74 16 39 H 0.03 1.44 7.88 -2.39 -0.02 1.42 16 40 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 41 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.06 2.00 7.78 -2.39 -0.02 1.98 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 45 H -0.01 -0.65 8.12 -2.39 -0.02 -0.67 16 46 H 0.04 2.44 6.69 -2.38 -0.02 2.42 16 47 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 48 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 49 H 0.10 1.20 7.46 -2.39 -0.02 1.18 16 50 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 52 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -77.36 415.33 2.69 -74.67 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.23 Total: 21.02 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 6.56 Total: 9.29 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -6.06 Total: -130.34 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.06 Total: -23.80 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.36 2.69 -74.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028250437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.146 kcal (2) G-P(sol) polarization free energy of solvation -77.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds