Wall clock time and date at job start Wed Apr 1 2020 04:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 N 1.46503 * 109.47229 * 119.99766 * 2 1 3 5 5 N 1.39926 * 125.75615 * 299.97826 * 4 2 1 6 6 C 1.30447 * 108.89829 * 179.97438 * 5 4 2 7 7 C 1.41286 * 108.02243 * 359.97438 * 6 5 4 8 8 C 1.47436 * 126.41334 * 179.97438 * 7 6 5 9 9 O 1.21607 * 119.99804 * 185.40440 * 8 7 6 10 10 N 1.34771 * 120.00041 * 5.40524 * 8 7 6 11 11 C 1.46502 * 120.00078 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47096 * 179.97438 * 11 10 8 13 13 H 1.09003 * 110.91644 * 57.45121 * 12 11 10 14 14 C 1.55161 * 111.00375 * 181.34993 * 12 11 10 15 15 C 1.54325 * 102.94427 * 153.57757 * 14 12 11 16 16 N 1.47030 * 107.26856 * 337.80758 * 15 14 12 17 17 C 1.36938 * 125.64721 * 179.20279 * 16 15 14 18 18 H 1.07999 * 119.99984 * 179.69211 * 17 16 15 19 19 C 1.38808 * 119.99875 * 359.69781 * 17 16 15 20 20 N 1.31622 * 120.00345 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00231 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46775 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47413 * 119.99362 * 21 19 17 24 24 H 1.48508 * 109.47151 * 239.99914 * 21 19 17 25 25 C 1.47420 * 108.70300 * 358.94191 * 16 15 14 26 26 C 1.34262 * 125.75062 * 120.26995 * 4 2 1 27 27 C 1.50695 * 126.29502 * 359.97438 * 26 4 2 28 28 C 1.53005 * 117.49883 * 312.42639 * 27 26 4 29 29 C 1.52993 * 60.00177 * 252.51188 * 28 27 26 30 30 H 1.08999 * 109.47367 * 299.99755 * 1 2 3 31 31 H 1.08998 * 109.47155 * 60.00198 * 1 2 3 32 32 H 1.09006 * 109.46877 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47367 * 240.00245 * 2 1 3 34 34 H 1.09001 * 109.47400 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46988 * 299.99905 * 3 2 1 36 36 H 1.08999 * 109.46843 * 59.99925 * 3 2 1 37 37 H 1.08005 * 125.98776 * 180.02562 * 6 5 4 38 38 H 0.97007 * 120.00235 * 359.97438 * 10 8 7 39 39 H 1.09005 * 109.46848 * 60.00241 * 11 10 8 40 40 H 1.08996 * 109.46855 * 300.00122 * 11 10 8 41 41 H 1.08998 * 110.72012 * 271.93867 * 14 12 11 42 42 H 1.09000 * 110.71644 * 35.03953 * 14 12 11 43 43 H 1.08990 * 109.88314 * 218.39450 * 15 14 12 44 44 H 1.09000 * 109.87995 * 97.21985 * 15 14 12 45 45 H 0.97004 * 120.00519 * 180.02562 * 20 19 17 46 46 H 1.09005 * 110.36992 * 142.96942 * 25 16 15 47 47 H 1.09001 * 110.36681 * 265.17919 * 25 16 15 48 48 H 1.08997 * 115.55567 * 98.13467 * 27 26 4 49 49 H 1.08999 * 117.50021 * 0.02562 * 28 27 26 50 50 H 1.08998 * 117.49769 * 145.01976 * 28 27 26 51 51 H 1.09010 * 117.49580 * 252.50913 * 29 28 27 52 52 H 1.08997 * 117.50022 * 107.49331 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7560 -0.3187 2.5194 6 6 2.3499 -1.1598 3.3203 7 6 3.0241 -2.1159 2.5283 8 6 3.8261 -3.2511 3.0201 9 8 4.4389 -3.9483 2.2345 10 7 3.8800 -3.5162 4.3404 11 6 4.6764 -4.6445 4.8291 12 6 4.5680 -4.7231 6.3532 13 1 3.5280 -4.8200 6.6649 14 6 5.4270 -5.8879 6.9126 15 6 5.7527 -5.4195 8.3465 16 7 5.6085 -3.9565 8.3712 17 6 5.7952 -3.1546 9.4653 18 1 5.6693 -2.0854 9.3790 19 6 6.1463 -3.7158 10.6854 20 7 6.2993 -5.0188 10.7908 21 14 6.4003 -2.6219 12.1782 22 1 6.1691 -1.2049 11.7985 23 1 5.4440 -3.0111 13.2455 24 1 7.7901 -2.7799 12.6769 25 6 5.2358 -3.4954 7.0215 26 6 2.7977 -1.7838 1.2076 27 6 3.3237 -2.5170 0.0007 28 6 2.3299 -2.8444 -1.1156 29 6 2.8565 -3.9587 -0.2092 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.3291 -1.1308 4.3998 38 1 3.3914 -2.9598 4.9672 39 1 5.7195 -4.5025 4.5463 40 1 4.3034 -5.5697 4.3898 41 1 4.8544 -6.8152 6.9305 42 1 6.3385 -6.0102 6.3275 43 1 6.7753 -5.6956 8.6033 44 1 5.0559 -5.8726 9.0517 45 1 6.5443 -5.4111 11.6435 46 1 4.5299 -2.6672 7.0849 47 1 6.1234 -3.1946 6.4648 48 1 4.3450 -2.2715 -0.2904 49 1 1.2957 -2.5291 -0.9772 50 1 2.6973 -2.8141 -2.1413 51 1 3.5704 -4.6617 -0.6387 52 1 2.1687 -4.3770 0.5258 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028916929.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:19 Heat of formation + Delta-G solvation = 82.436655 kcal Electronic energy + Delta-G solvation = -30512.410377 eV Core-core repulsion = 26514.856981 eV Total energy + Delta-G solvation = -3997.553396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.80200 -39.14187 -37.53682 -37.31746 -35.92790 -34.46354 -32.45448 -30.92331 -30.41011 -29.49239 -28.10909 -27.78408 -25.62268 -24.33769 -23.43134 -23.22212 -22.45290 -21.93549 -20.24713 -19.87432 -19.54451 -19.30259 -17.61080 -16.80266 -16.44435 -16.10080 -15.67753 -15.21275 -15.17265 -14.91207 -14.67313 -14.62279 -14.29562 -13.80261 -13.71352 -13.42768 -13.27136 -12.88893 -12.67682 -12.66480 -12.30432 -12.26735 -11.97100 -11.94502 -11.85161 -11.75721 -11.67101 -11.33042 -11.28053 -10.86624 -10.81142 -10.78413 -10.50304 -10.32538 -10.08833 -9.93435 -9.82652 -9.63153 -9.61226 -9.55769 -8.93286 -8.60603 -8.57446 -6.79732 -5.68610 -3.01860 1.36647 2.01990 2.09249 3.36930 3.41462 3.46902 3.48953 3.49456 3.56378 4.01066 4.05183 4.39847 4.48291 4.48983 4.51913 4.62620 4.68712 4.86896 5.04481 5.05871 5.13823 5.16944 5.20447 5.23611 5.25823 5.31539 5.35258 5.47456 5.58774 5.60770 5.64332 5.66556 5.71509 5.75505 5.77707 5.87073 5.96457 6.12714 6.14435 6.28335 6.40018 6.54016 6.58793 6.60632 6.64020 6.77217 6.97454 7.38877 7.59522 7.67158 7.77079 7.86055 8.29114 8.48250 9.25127 9.85667 10.51924 11.43226 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.002178 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.944172 B =12853.769809 C =14180.896568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 C -0.162 4.162 4 N -0.350 5.350 5 N -0.292 5.292 6 C 0.080 3.920 7 C -0.285 4.285 8 C 0.591 3.409 9 O -0.546 6.546 10 N -0.723 5.723 11 C 0.137 3.863 12 C -0.118 4.118 13 H 0.079 0.921 14 C -0.135 4.135 15 C 0.177 3.823 16 N -0.607 5.607 17 C -0.226 4.226 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.142 3.858 26 C 0.181 3.819 27 C -0.096 4.096 28 C -0.191 4.191 29 C -0.124 4.124 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.190 0.810 38 H 0.399 0.601 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.042 0.958 44 H 0.046 0.954 45 H 0.251 0.749 46 H 0.035 0.965 47 H 0.019 0.981 48 H 0.129 0.871 49 H 0.093 0.907 50 H 0.103 0.897 51 H 0.105 0.895 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 6.894 -26.500 29.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 C -0.219 4.219 4 N -0.130 5.130 5 N -0.111 5.111 6 C -0.107 4.107 7 C -0.300 4.300 8 C 0.378 3.622 9 O -0.425 6.425 10 N -0.373 5.373 11 C 0.014 3.986 12 C -0.137 4.137 13 H 0.097 0.903 14 C -0.174 4.174 15 C 0.053 3.947 16 N -0.333 5.333 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.016 3.984 26 C 0.049 3.951 27 C -0.116 4.116 28 C -0.228 4.228 29 C -0.162 4.162 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.207 0.793 38 H 0.233 0.767 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.037 0.963 48 H 0.147 0.853 49 H 0.111 0.889 50 H 0.122 0.878 51 H 0.123 0.877 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.917 7.513 -27.002 30.456 hybrid contribution 0.489 0.182 1.444 1.536 sum -11.429 7.694 -25.557 29.034 Atomic orbital electron populations 1.22141 0.93050 1.03038 1.03705 1.21528 0.95768 0.94191 0.83847 1.22136 1.01960 0.94219 1.03618 1.48667 1.37636 1.20744 1.05953 1.77132 1.24295 1.23448 0.86210 1.24081 0.94595 0.91908 1.00157 1.20030 1.13959 1.04201 0.91832 1.17168 0.80088 0.82801 0.82116 1.90745 1.45687 1.50601 1.55430 1.45828 1.51423 1.33061 1.07012 1.21335 0.95473 0.88244 0.93583 1.22609 1.00422 0.98682 0.92021 0.90273 1.22855 0.98409 0.96468 0.99629 1.21143 1.00261 0.83678 0.89662 1.44498 1.81480 1.02871 1.04460 1.19102 1.39982 0.89784 0.86600 0.90440 1.24806 1.02020 0.96017 0.97767 1.69979 1.54141 1.08759 1.24107 0.86053 0.77414 0.79392 0.82960 1.20527 1.21791 1.21797 1.21562 0.95766 0.93818 0.87248 1.20508 0.91781 0.87960 0.94893 1.20424 0.99176 0.99469 0.92551 1.23232 0.98608 1.04977 0.95941 1.22780 1.02388 0.90262 1.00742 0.90836 0.90485 0.92070 0.87379 0.91929 0.90535 0.90883 0.79290 0.76692 0.91484 0.91807 0.92042 0.92227 0.93971 0.93569 0.93845 0.94681 0.96298 0.85308 0.88879 0.87841 0.87687 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.45 37.16 0.35 -0.60 16 2 C 0.15 1.02 3.14 -67.93 -0.21 0.81 16 3 C -0.16 -1.01 9.44 37.16 0.35 -0.66 16 4 N -0.35 -3.57 3.25 -50.16 -0.16 -3.73 16 5 N -0.29 -3.45 12.33 30.86 0.38 -3.07 16 6 C 0.08 0.92 11.50 -16.98 -0.20 0.72 16 7 C -0.29 -3.61 6.12 -105.06 -0.64 -4.25 16 8 C 0.59 8.45 7.81 -12.52 -0.10 8.35 16 9 O -0.55 -9.03 14.75 5.27 0.08 -8.95 16 10 N -0.72 -9.66 5.40 -61.38 -0.33 -9.99 16 11 C 0.14 2.01 5.12 -4.04 -0.02 1.99 16 12 C -0.12 -1.96 3.10 -88.47 -0.27 -2.23 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.13 -2.47 6.42 -24.89 -0.16 -2.63 16 15 C 0.18 4.31 5.37 -3.06 -0.02 4.29 16 16 N -0.61 -15.49 3.39 -170.07 -0.58 -16.06 16 17 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -27.29 10.31 55.49 0.57 -26.72 16 21 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C 0.14 2.87 6.41 -2.53 -0.02 2.85 16 26 C 0.18 2.04 6.45 -81.60 -0.53 1.51 16 27 C -0.10 -0.91 4.84 -91.77 -0.44 -1.35 16 28 C -0.19 -1.27 8.52 -26.73 -0.23 -1.50 16 29 C -0.12 -1.14 9.03 -26.73 -0.24 -1.38 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.11 0.59 5.61 -51.93 -0.29 0.30 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.19 1.69 7.53 -52.48 -0.40 1.30 16 38 H 0.40 4.68 7.32 -40.82 -0.30 4.38 16 39 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 43 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 44 H 0.05 1.24 7.38 -51.93 -0.38 0.85 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 48 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.09 0.59 7.43 -51.93 -0.39 0.20 16 50 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.10 0.92 8.14 -51.92 -0.42 0.49 16 52 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 415.86 15.07 6.27 6.27 Total: -1.00 -33.75 415.86 -10.29 -44.03 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.86 Total: 1.94 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.63 Total: -0.95 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.12 Total: -59.57 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.75 -10.29 -44.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028916929.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.471 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds