Wall clock time and date at job start Wed Apr 1 2020 04:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47475 * 2 1 4 4 N 1.46497 * 109.47149 * 179.97438 * 3 2 1 5 5 N 1.39939 * 125.75509 * 269.99999 * 4 3 2 6 6 C 1.30443 * 108.89781 * 179.73856 * 5 4 3 7 7 C 1.50693 * 125.98944 * 180.26400 * 6 5 4 8 8 C 1.41293 * 108.02397 * 0.40940 * 6 5 4 9 9 C 1.47429 * 126.41613 * 179.85796 * 8 6 5 10 10 O 1.21600 * 119.99761 * 262.95647 * 9 8 6 11 11 N 1.34775 * 120.00106 * 82.96253 * 9 8 6 12 12 C 1.47163 * 120.70922 * 354.73139 * 11 9 8 13 13 C 1.53884 * 108.03394 * 132.73926 * 12 11 9 14 14 H 1.09003 * 112.10275 * 181.90930 * 13 12 11 15 15 C 1.54547 * 108.36990 * 306.25332 * 13 12 11 16 16 C 1.54827 * 104.74392 * 89.16485 * 15 13 12 17 17 C 1.54540 * 104.74569 * 0.02562 * 16 15 13 18 18 H 1.09005 * 112.68523 * 146.80468 * 17 16 15 19 19 C 1.47163 * 120.70934 * 174.71671 * 11 9 8 20 20 N 1.48311 * 104.35994 * 24.81836 * 17 16 15 21 21 C 1.36939 * 128.07874 * 139.08151 * 20 17 16 22 22 H 1.07997 * 119.99720 * 27.14817 * 21 20 17 23 23 C 1.38816 * 119.99844 * 207.15298 * 21 20 17 24 24 N 1.31624 * 119.99491 * 199.36099 * 23 21 20 25 25 Si 1.86800 * 120.00205 * 19.36222 * 23 21 20 26 26 H 1.48495 * 109.46981 * 271.77077 * 25 23 21 27 27 H 1.48501 * 109.47136 * 31.77303 * 25 23 21 28 28 H 1.48497 * 109.46958 * 151.77159 * 25 23 21 29 29 C 1.34263 * 125.75635 * 89.99976 * 4 3 2 30 30 C 1.50708 * 126.28839 * 0.02562 * 29 4 3 31 31 H 1.08992 * 109.47083 * 300.00288 * 1 2 3 32 32 H 1.09000 * 109.47074 * 60.00045 * 1 2 3 33 33 H 1.08999 * 109.47003 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47078 * 240.00044 * 2 1 3 35 35 H 1.09000 * 109.47074 * 119.99955 * 2 1 3 36 36 H 1.08999 * 109.46876 * 59.99530 * 3 2 1 37 37 H 1.09000 * 109.46933 * 300.00041 * 3 2 1 38 38 H 1.09003 * 109.47176 * 274.89446 * 7 6 5 39 39 H 1.09000 * 109.47426 * 34.89533 * 7 6 5 40 40 H 1.09001 * 109.47524 * 154.89391 * 7 6 5 41 41 H 1.09001 * 109.75267 * 13.10843 * 12 11 9 42 42 H 1.08994 * 109.79318 * 252.39834 * 12 11 9 43 43 H 1.08992 * 110.36580 * 208.13739 * 15 13 12 44 44 H 1.09010 * 110.35949 * 330.45376 * 15 13 12 45 45 H 1.08991 * 110.31349 * 241.24708 * 16 15 13 46 46 H 1.09010 * 110.60985 * 118.91457 * 16 15 13 47 47 H 1.08993 * 109.75180 * 346.88913 * 19 11 9 48 48 H 1.08995 * 109.75102 * 107.63289 * 19 11 9 49 49 H 0.96998 * 119.99524 * 179.97438 * 24 23 21 50 50 H 1.08991 * 109.47079 * 269.97609 * 30 29 4 51 51 H 1.09000 * 109.46683 * 29.97694 * 30 29 4 52 52 H 1.09000 * 109.46519 * 149.97540 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3223 1.4425 1.1366 6 6 5.5708 1.4367 0.7589 7 6 6.7714 1.4292 1.6695 8 6 5.6002 1.4423 -0.6538 9 6 6.8045 1.4416 -1.5041 10 8 7.2302 2.4871 -1.9561 11 7 7.4337 0.2822 -1.7806 12 6 7.0021 -0.9758 -1.1506 13 6 6.8950 -2.0470 -2.2502 14 1 6.5459 -3.0027 -1.8591 15 6 5.9785 -1.5052 -3.3704 16 6 6.9333 -0.7596 -4.3345 17 6 8.3349 -0.9231 -3.7046 18 1 9.1263 -0.9898 -4.4513 19 6 8.5666 0.2471 -2.7191 20 7 8.2296 -2.1567 -2.8881 21 6 9.1517 -3.1598 -2.7505 22 1 10.2027 -2.9486 -2.8810 23 6 8.7353 -4.4479 -2.4435 24 7 9.5904 -5.3139 -1.9420 25 14 6.9617 -4.9524 -2.7421 26 1 6.1468 -4.6297 -1.5434 27 1 6.4285 -4.2159 -3.9162 28 1 6.8999 -6.4128 -3.0041 29 6 4.2901 1.4422 -1.0886 30 6 3.8261 1.4425 -2.5225 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6768 1.9563 -0.8900 38 1 7.0132 2.4514 1.9605 39 1 6.5486 0.8410 2.5597 40 1 7.6211 0.9896 1.1470 41 1 6.0305 -0.8361 -0.6767 42 1 7.7343 -1.2854 -0.4049 43 1 5.4815 -2.3275 -3.8849 44 1 5.2427 -0.8148 -2.9577 45 1 6.6642 0.2950 -4.3931 46 1 6.9080 -1.2123 -5.3258 47 1 8.6175 1.1860 -3.2704 48 1 9.4951 0.0908 -2.1700 49 1 9.2994 -6.2139 -1.7271 50 1 3.7142 0.4150 -2.8684 51 1 2.8675 1.9564 -2.5940 52 1 4.5610 1.9565 -3.1420 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029543979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:17 Heat of formation + Delta-G solvation = 73.942750 kcal Electronic energy + Delta-G solvation = -33136.012704 eV Core-core repulsion = 29138.090984 eV Total energy + Delta-G solvation = -3997.921720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.58919 -39.93037 -37.82196 -35.83884 -33.84267 -33.16317 -32.44472 -31.84293 -30.81035 -29.93096 -29.03482 -27.73841 -26.33763 -25.55761 -24.24554 -23.52422 -22.31915 -21.49783 -20.32113 -19.59917 -19.42527 -18.53159 -17.44680 -16.55753 -16.28581 -15.89309 -15.68462 -15.21134 -15.07006 -14.92707 -14.08612 -13.88301 -13.73306 -13.53207 -13.52156 -13.29718 -13.26933 -13.06084 -13.00374 -12.64300 -12.58274 -12.49688 -12.29526 -12.24105 -12.05647 -11.94541 -11.80320 -11.58278 -11.31560 -11.21108 -11.04456 -10.82815 -10.71484 -10.58220 -10.32557 -9.91725 -9.86601 -9.54062 -9.50599 -9.18159 -8.74566 -8.41268 -8.23456 -7.04143 -6.03295 -3.39060 1.67514 2.25708 2.49947 2.92070 3.20741 3.39220 3.42188 3.55469 4.22441 4.39040 4.44564 4.46840 4.62336 4.72664 4.73345 4.86399 4.95831 5.03663 5.10557 5.21521 5.25442 5.27471 5.29313 5.37218 5.43076 5.55030 5.57898 5.59550 5.61980 5.62435 5.64793 5.72377 5.77122 5.83719 5.87718 5.90644 5.99241 6.08128 6.20601 6.23398 6.29846 6.35788 6.40228 6.45319 6.55874 6.65169 6.74700 6.85605 7.03652 7.62682 7.64173 7.87975 8.25957 8.57441 8.72034 9.58209 10.17483 11.12927 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.004336 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.176176 B = 6455.473925 C = 7382.318379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.132 3.868 4 N -0.361 5.361 5 N -0.298 5.298 6 C 0.111 3.889 7 C -0.076 4.076 8 C -0.270 4.270 9 C 0.595 3.405 10 O -0.553 6.553 11 N -0.583 5.583 12 C 0.104 3.896 13 C 0.118 3.882 14 H 0.085 0.915 15 C -0.130 4.130 16 C -0.123 4.123 17 C 0.137 3.863 18 H 0.089 0.911 19 C 0.103 3.897 20 N -0.595 5.595 21 C -0.237 4.237 22 H 0.091 0.909 23 C 0.029 3.971 24 N -0.906 5.906 25 Si 0.876 3.124 26 H -0.286 1.286 27 H -0.265 1.265 28 H -0.302 1.302 29 C 0.125 3.875 30 C -0.098 4.098 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.264 0.736 50 H 0.087 0.913 51 H 0.073 0.927 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.290 12.739 1.972 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.010 3.990 4 N -0.141 5.141 5 N -0.120 5.120 6 C -0.056 4.056 7 C -0.135 4.135 8 C -0.285 4.285 9 C 0.381 3.619 10 O -0.432 6.432 11 N -0.314 5.314 12 C -0.021 4.021 13 C 0.011 3.989 14 H 0.102 0.898 15 C -0.169 4.169 16 C -0.163 4.163 17 C 0.029 3.971 18 H 0.107 0.893 19 C -0.021 4.021 20 N -0.318 5.318 21 C -0.364 4.364 22 H 0.109 0.891 23 C -0.171 4.171 24 N -0.548 5.548 25 Si 0.708 3.292 26 H -0.214 1.214 27 H -0.190 1.190 28 H -0.230 1.230 29 C -0.005 4.005 30 C -0.157 4.157 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.106 0.894 51 H 0.092 0.908 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.835 12.984 2.785 21.442 hybrid contribution -0.609 -0.599 -0.646 1.071 sum -17.444 12.385 2.139 21.500 Atomic orbital electron populations 1.21689 0.94224 1.02620 1.02104 1.21948 0.96692 0.95655 1.03812 1.21807 0.74052 0.98661 1.04439 1.48245 1.06214 1.56492 1.03112 1.77065 1.01163 1.26584 1.07142 1.22297 0.93552 0.97451 0.92278 1.20249 0.92309 1.03231 0.97715 1.19844 0.92806 1.22146 0.93674 1.17310 0.82029 0.83147 0.79409 1.90723 1.67011 1.31375 1.54094 1.47995 1.32477 1.07123 1.43843 1.22380 0.99456 0.84009 0.96225 1.22261 0.88132 0.96268 0.92267 0.89791 1.22707 0.97645 0.99140 0.97431 1.22529 0.96426 0.98960 0.98338 1.22223 0.95906 0.86976 0.92017 0.89343 1.22530 0.88089 0.99786 0.91709 1.45454 1.15970 1.21244 1.49104 1.18605 0.88183 0.85372 1.44276 0.89147 1.25180 0.97087 0.95517 0.99294 1.69799 1.34904 1.06071 1.44036 0.86997 0.86545 0.76815 0.78845 1.21421 1.18991 1.23039 1.21222 0.89728 0.98728 0.90870 1.20605 1.02391 1.03881 0.88785 0.92290 0.92353 0.91845 0.91122 0.90713 0.88583 0.88942 0.90243 0.90377 0.90238 0.91207 0.91029 0.92216 0.92383 0.92318 0.92143 0.90138 0.91421 0.92595 0.89434 0.90779 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.14 -1.11 6.26 -26.73 -0.17 -1.28 16 3 C 0.13 1.09 6.21 -4.04 -0.03 1.06 16 4 N -0.36 -4.48 3.58 -56.60 -0.20 -4.68 16 5 N -0.30 -4.36 12.50 33.89 0.42 -3.94 16 6 C 0.11 1.67 7.08 -82.02 -0.58 1.09 16 7 C -0.08 -0.97 10.31 36.00 0.37 -0.60 16 8 C -0.27 -4.22 3.95 -105.07 -0.41 -4.64 16 9 C 0.59 10.34 6.77 -12.52 -0.08 10.26 16 10 O -0.55 -11.08 16.61 5.28 0.09 -10.99 16 11 N -0.58 -10.11 2.28 -172.27 -0.39 -10.50 16 12 C 0.10 1.88 5.84 -3.22 -0.02 1.86 16 13 C 0.12 2.37 2.86 -65.65 -0.19 2.19 16 14 H 0.08 1.87 3.41 -51.93 -0.18 1.69 16 15 C -0.13 -2.25 6.06 -24.96 -0.15 -2.40 16 16 C -0.12 -2.04 6.24 -24.96 -0.16 -2.20 16 17 C 0.14 2.54 4.32 -65.21 -0.28 2.25 16 18 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 19 C 0.10 1.81 5.94 -2.77 -0.02 1.79 16 20 N -0.60 -13.31 2.46 -152.08 -0.37 -13.68 16 21 C -0.24 -6.32 10.72 -15.06 -0.16 -6.49 16 22 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 23 C 0.03 0.80 5.47 -17.43 -0.10 0.70 16 24 N -0.91 -26.91 13.97 55.49 0.78 -26.14 16 25 Si 0.88 21.37 24.81 -169.99 -4.22 17.15 16 26 H -0.29 -6.73 6.41 56.52 0.36 -6.37 16 27 H -0.26 -6.24 6.00 56.52 0.34 -5.90 16 28 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 29 C 0.12 1.65 7.01 -81.60 -0.57 1.08 16 30 C -0.10 -1.01 9.66 36.01 0.35 -0.66 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.56 7.02 -51.93 -0.36 0.20 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.06 7.89 -51.93 -0.41 0.65 16 41 H 0.07 1.18 6.29 -51.93 -0.33 0.85 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.06 1.06 7.06 -51.93 -0.37 0.69 16 44 H 0.06 0.88 6.03 -51.92 -0.31 0.56 16 45 H 0.06 0.90 7.87 -51.93 -0.41 0.49 16 46 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 47 H 0.08 1.36 7.16 -51.93 -0.37 0.99 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.09 0.84 6.64 -51.93 -0.34 0.50 16 51 H 0.07 0.55 7.05 -51.93 -0.37 0.18 16 52 H 0.09 1.02 7.96 -51.93 -0.41 0.61 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -32.75 398.77 -8.31 -41.06 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.59 Total: 2.16 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.83 Total: 3.56 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.23 Total: -58.95 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.22 Total: 17.15 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.75 -8.31 -41.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029543979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.007 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds