Wall clock time and date at job start Wed Apr 1 2020 04:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47380 * 2 1 4 4 N 1.46500 * 109.47337 * 120.00562 * 2 1 3 5 5 C 1.35035 * 124.88387 * 275.02570 * 4 2 1 6 6 C 1.35367 * 107.22807 * 179.75882 * 5 4 2 7 7 C 1.41500 * 105.50260 * 0.35756 * 6 5 4 8 8 C 1.47707 * 126.51758 * 179.90538 * 7 6 5 9 9 O 1.21569 * 120.00267 * 7.37548 * 8 7 6 10 10 N 1.34780 * 119.99946 * 187.38646 * 8 7 6 11 11 C 1.46942 * 120.55196 * 185.67022 * 10 8 7 12 12 C 1.53340 * 108.68617 * 125.66791 * 11 10 8 13 13 C 1.52106 * 109.44242 * 53.30296 * 12 11 10 14 14 C 1.54388 * 110.50754 * 64.09192 * 13 12 11 15 15 C 1.54449 * 102.87030 * 83.33055 * 14 13 12 16 16 N 1.47075 * 107.30178 * 21.50450 * 15 14 13 17 17 C 1.36939 * 125.63142 * 180.96652 * 16 15 14 18 18 H 1.08006 * 120.00012 * 176.05568 * 17 16 15 19 19 C 1.38812 * 120.00106 * 356.05874 * 17 16 15 20 20 N 1.31611 * 120.00182 * 158.88745 * 19 17 16 21 21 Si 1.86802 * 119.99684 * 338.89217 * 19 17 16 22 22 H 1.48502 * 109.46880 * 185.84060 * 21 19 17 23 23 H 1.48506 * 109.46920 * 305.83588 * 21 19 17 24 24 H 1.48499 * 109.47406 * 65.84169 * 21 19 17 25 25 C 1.47579 * 108.74183 * 1.22913 * 16 15 14 26 26 C 1.52103 * 111.59954 * 300.69057 * 13 12 11 27 27 C 1.46925 * 120.55545 * 5.68570 * 10 8 7 28 28 N 1.28473 * 124.88601 * 95.01519 * 4 2 1 29 29 H 1.08997 * 109.46966 * 59.99052 * 1 2 3 30 30 H 1.08992 * 109.47420 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46724 * 299.99984 * 1 2 3 32 32 H 1.09005 * 109.46724 * 240.00016 * 2 1 3 33 33 H 1.09001 * 109.46935 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47345 * 300.00397 * 3 2 1 35 35 H 1.09002 * 109.46689 * 60.00289 * 3 2 1 36 36 H 1.07999 * 126.38322 * 0.02719 * 5 4 2 37 37 H 1.07998 * 127.24565 * 180.23926 * 6 5 4 38 38 H 1.09002 * 109.59870 * 5.90645 * 11 10 8 39 39 H 1.08995 * 109.73171 * 245.50331 * 11 10 8 40 40 H 1.09004 * 109.47281 * 293.31272 * 12 11 10 41 41 H 1.09003 * 109.47710 * 173.29695 * 12 11 10 42 42 H 1.08993 * 110.73588 * 324.98138 * 14 13 12 43 43 H 1.09007 * 110.72870 * 201.67598 * 14 13 12 44 44 H 1.08996 * 109.87725 * 262.07633 * 15 14 13 45 45 H 1.09012 * 109.87992 * 140.93024 * 15 14 13 46 46 H 0.97001 * 119.99996 * 5.01522 * 20 19 17 47 47 H 1.09006 * 110.36969 * 95.26291 * 25 16 15 48 48 H 1.09002 * 110.37885 * 217.60789 * 25 16 15 49 49 H 1.09005 * 109.47635 * 179.29470 * 26 13 12 50 50 H 1.08998 * 109.47883 * 299.31236 * 26 13 12 51 51 H 1.09003 * 109.60117 * 354.08494 * 27 10 8 52 52 H 1.08992 * 109.60277 * 114.56369 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1844 -0.1154 2.4064 6 6 2.6432 -1.0731 3.2460 7 6 2.7472 -2.2459 2.4612 8 6 3.2070 -3.5725 2.9198 9 8 3.4143 -3.7689 4.1015 10 7 3.3970 -4.5653 2.0282 11 6 3.7336 -5.9219 2.4814 12 6 2.7220 -6.9056 1.8810 13 6 2.6685 -6.7190 0.3724 14 6 4.0275 -7.0791 -0.2657 15 6 3.9442 -8.6146 -0.4090 16 7 2.5194 -8.9789 -0.3921 17 6 2.0202 -10.2513 -0.4764 18 1 0.9569 -10.4210 -0.3913 19 6 2.8807 -11.3229 -0.6713 20 7 2.4998 -12.5402 -0.3467 21 14 4.5792 -11.0373 -1.3943 22 1 5.2424 -12.3447 -1.6315 23 1 4.4531 -10.3057 -2.6804 24 1 5.3925 -10.2347 -0.4458 25 6 1.7162 -7.7463 -0.2758 26 6 2.2623 -5.3020 -0.0025 27 6 3.2712 -4.3090 0.5870 28 7 2.3502 -1.9309 1.2444 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.9839 0.9153 2.6587 37 1 2.8816 -0.9643 4.2937 38 1 3.6855 -5.9664 3.5694 39 1 4.7384 -6.1823 2.1488 40 1 1.7359 -6.7172 2.3057 41 1 3.0276 -7.9264 2.1104 42 1 4.8495 -6.7969 0.3921 43 1 4.1329 -6.6055 -1.2418 44 1 4.4589 -9.0930 0.4242 45 1 4.3947 -8.9239 -1.3523 46 1 1.5935 -12.6991 -0.0397 47 1 1.3998 -7.4051 -1.2615 48 1 0.8501 -7.9166 0.3638 49 1 2.2472 -5.2034 -1.0880 50 1 1.2698 -5.0910 0.3955 51 1 2.9182 -3.2903 0.4261 52 1 4.2400 -4.4429 0.1059 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035232572.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:28 Heat of formation + Delta-G solvation = 92.130832 kcal Electronic energy + Delta-G solvation = -31779.503157 eV Core-core repulsion = 27782.370131 eV Total energy + Delta-G solvation = -3997.133025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.01920 -40.27007 -38.60988 -36.28615 -35.92718 -33.13168 -31.60056 -31.21392 -31.18132 -30.11402 -28.97172 -27.97851 -27.17602 -24.75674 -23.60141 -23.29665 -22.79580 -22.12494 -20.66082 -20.31400 -19.80237 -18.28724 -17.69599 -17.19029 -16.74390 -16.34272 -15.83774 -15.30084 -15.23839 -15.03400 -14.84529 -14.16212 -14.11240 -13.82702 -13.64360 -13.45414 -13.35516 -13.29268 -13.02813 -12.91822 -12.86364 -12.76468 -12.53624 -12.15280 -12.02504 -11.80219 -11.70390 -11.49218 -11.18150 -11.07402 -10.88547 -10.78654 -10.27365 -10.19264 -10.13837 -9.91926 -9.69504 -9.46209 -9.41153 -9.31565 -8.87252 -8.51348 -8.44335 -6.98563 -6.24825 -3.10336 1.38305 1.91243 2.04123 3.05766 3.35910 3.46554 3.54508 3.75445 3.83387 4.17690 4.33059 4.37863 4.42382 4.66890 4.76894 4.82329 4.89652 4.94633 4.99112 5.02818 5.11663 5.15899 5.17800 5.31459 5.32138 5.41358 5.43297 5.48259 5.50432 5.51575 5.59179 5.73573 5.76610 5.85443 5.91144 5.94813 6.04654 6.11316 6.18207 6.25689 6.38105 6.43752 6.45523 6.50471 6.55423 6.70377 6.80282 6.87887 6.90304 7.42150 7.70305 7.74584 8.20083 8.40152 9.12519 9.66340 10.33190 11.25898 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.002624 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.189392 B =10667.865533 C =11323.325752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 C -0.165 4.165 4 N -0.280 5.280 5 C -0.015 4.015 6 C -0.180 4.180 7 C -0.008 4.008 8 C 0.600 3.400 9 O -0.540 6.540 10 N -0.593 5.593 11 C 0.112 3.888 12 C -0.110 4.110 13 C -0.072 4.072 14 C -0.122 4.122 15 C 0.114 3.886 16 N -0.611 5.611 17 C -0.322 4.322 18 H 0.077 0.923 19 C -0.026 4.026 20 N -0.928 5.928 21 Si 1.070 2.930 22 H -0.303 1.303 23 H -0.301 1.301 24 H -0.282 1.282 25 C 0.148 3.852 26 C -0.110 4.110 27 C 0.077 3.923 28 N -0.258 5.258 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.179 0.821 37 H 0.161 0.839 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.024 0.976 46 H 0.260 0.740 47 H 0.021 0.979 48 H 0.042 0.958 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.134 0.866 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 32.778 1.019 32.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 C -0.223 4.223 4 N -0.068 5.068 5 C -0.158 4.158 6 C -0.208 4.208 7 C -0.167 4.167 8 C 0.386 3.614 9 O -0.416 6.416 10 N -0.325 5.325 11 C -0.010 4.010 12 C -0.149 4.149 13 C -0.073 4.073 14 C -0.160 4.160 15 C -0.010 4.010 16 N -0.339 5.339 17 C -0.449 4.449 18 H 0.094 0.906 19 C -0.225 4.225 20 N -0.570 5.570 21 Si 0.904 3.096 22 H -0.231 1.231 23 H -0.229 1.229 24 H -0.210 1.210 25 C 0.022 3.978 26 C -0.149 4.149 27 C -0.046 4.046 28 N -0.093 5.093 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.196 0.804 37 H 0.179 0.821 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.041 0.959 46 H 0.070 0.930 47 H 0.039 0.961 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.150 0.850 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.472 31.424 0.089 31.428 hybrid contribution -1.477 1.040 0.846 1.994 sum -1.005 32.464 0.934 32.493 Atomic orbital electron populations 1.22236 0.92722 1.03925 1.03526 1.21622 0.95659 0.93383 0.85445 1.22199 1.02546 0.93480 1.04042 1.46000 1.45096 1.06159 1.09549 1.22738 1.06763 1.00776 0.85542 1.21753 1.06777 0.91030 1.01235 1.21990 1.07839 0.96152 0.90749 1.17025 0.77253 0.81897 0.85184 1.90771 1.52627 1.81791 1.16396 1.47941 1.68130 1.09232 1.07154 1.21779 0.98592 0.79952 1.00697 1.21635 0.99152 0.99760 0.94309 1.21125 0.96648 0.94419 0.95145 1.22645 0.96686 0.96607 1.00024 1.21965 0.87745 0.93037 0.98302 1.44877 0.99621 1.02198 1.87193 1.20105 0.94456 0.81431 1.48945 0.90567 1.25742 1.04855 0.92203 0.99711 1.70927 1.19273 1.21602 1.45190 0.83855 0.76114 0.73261 0.76322 1.23138 1.22942 1.20967 1.21526 0.93516 0.86213 0.96548 1.21647 0.98914 0.93750 1.00543 1.22705 0.99617 1.03342 0.78941 1.73177 1.17175 0.97352 1.21597 0.89948 0.91160 0.91599 0.87133 0.91202 0.89568 0.91216 0.80435 0.82138 0.89132 0.91124 0.91915 0.89485 0.91366 0.91690 0.93688 0.95868 0.92968 0.96135 0.93972 0.90875 0.91833 0.84972 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 9.52 37.16 0.35 -0.32 16 2 C 0.14 0.65 3.80 -67.93 -0.26 0.39 16 3 C -0.16 -0.39 8.81 37.16 0.33 -0.06 16 4 N -0.28 -2.27 3.22 -54.83 -0.18 -2.44 16 5 C -0.02 -0.11 10.54 -17.17 -0.18 -0.30 16 6 C -0.18 -1.88 10.82 -39.36 -0.43 -2.31 16 7 C -0.01 -0.10 6.86 -82.77 -0.57 -0.67 16 8 C 0.60 9.17 7.69 -12.39 -0.10 9.07 16 9 O -0.54 -9.67 16.36 5.30 0.09 -9.58 16 10 N -0.59 -8.47 2.96 -173.74 -0.51 -8.98 16 11 C 0.11 1.65 6.11 -3.63 -0.02 1.63 16 12 C -0.11 -1.80 4.87 -27.01 -0.13 -1.93 16 13 C -0.07 -1.18 0.55 -153.99 -0.08 -1.27 16 14 C -0.12 -2.05 4.92 -25.24 -0.12 -2.18 16 15 C 0.11 2.52 4.20 -2.97 -0.01 2.51 16 16 N -0.61 -15.18 3.34 -170.17 -0.57 -15.75 16 17 C -0.32 -9.41 10.52 -15.06 -0.16 -9.57 16 18 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 19 C -0.03 -0.78 5.48 -17.43 -0.10 -0.87 16 20 N -0.93 -29.78 13.70 55.49 0.76 -29.02 16 21 Si 1.07 27.46 24.57 -169.99 -4.18 23.28 16 22 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 23 H -0.30 -7.48 6.95 56.52 0.39 -7.09 16 24 H -0.28 -6.61 5.24 56.52 0.30 -6.31 16 25 C 0.15 3.01 6.16 -2.75 -0.02 3.00 16 26 C -0.11 -1.48 4.84 -27.01 -0.13 -1.61 16 27 C 0.08 0.97 6.05 -3.63 -0.02 0.95 16 28 N -0.26 -2.86 8.38 33.42 0.28 -2.58 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 35 H 0.07 0.12 7.06 -51.93 -0.37 -0.25 16 36 H 0.18 0.67 7.16 -52.49 -0.38 0.29 16 37 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.09 1.39 7.03 -51.93 -0.36 1.03 16 39 H 0.07 0.99 6.55 -51.93 -0.34 0.65 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.61 7.82 -51.93 -0.41 1.20 16 42 H 0.07 1.03 6.18 -51.93 -0.32 0.71 16 43 H 0.06 1.01 7.98 -51.92 -0.41 0.59 16 44 H 0.05 1.05 6.52 -51.93 -0.34 0.71 16 45 H 0.02 0.55 4.29 -51.92 -0.22 0.33 16 46 H 0.26 8.26 8.73 -40.82 -0.36 7.91 16 47 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 48 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 49 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.13 1.57 3.76 -108.14 -0.41 1.17 16 52 H 0.06 0.75 7.62 -51.93 -0.40 0.36 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -36.01 389.62 -8.78 -44.79 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.70 Total: -2.06 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.65 Total: -3.54 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.22 Total: -58.77 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 27.46 SS G_CDS: -4.18 Total: 23.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.01 -8.78 -44.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035232572.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.926 kcal (2) G-P(sol) polarization free energy of solvation -36.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds