Wall clock time and date at job start Wed Apr 1 2020 04:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47380 * 2 1 4 4 N 1.46500 * 109.47337 * 120.00562 * 2 1 3 5 5 C 1.35035 * 124.88387 * 275.02570 * 4 2 1 6 6 C 1.35367 * 107.22807 * 179.75882 * 5 4 2 7 7 C 1.41500 * 105.50260 * 0.35756 * 6 5 4 8 8 C 1.47707 * 126.51758 * 179.90538 * 7 6 5 9 9 O 1.21569 * 120.00267 * 7.37548 * 8 7 6 10 10 N 1.34780 * 119.99946 * 187.38646 * 8 7 6 11 11 C 1.46942 * 120.55196 * 185.67022 * 10 8 7 12 12 C 1.53340 * 108.68617 * 125.66791 * 11 10 8 13 13 C 1.52106 * 109.44242 * 53.30296 * 12 11 10 14 14 C 1.54388 * 110.50754 * 64.09192 * 13 12 11 15 15 C 1.54449 * 102.87030 * 83.33055 * 14 13 12 16 16 N 1.47075 * 107.30178 * 21.50450 * 15 14 13 17 17 C 1.36939 * 125.63142 * 180.96652 * 16 15 14 18 18 H 1.08006 * 120.00012 * 176.05568 * 17 16 15 19 19 C 1.38812 * 120.00106 * 356.05874 * 17 16 15 20 20 N 1.31611 * 120.00182 * 158.88745 * 19 17 16 21 21 Si 1.86802 * 119.99684 * 338.89217 * 19 17 16 22 22 H 1.48502 * 109.46880 * 185.84060 * 21 19 17 23 23 H 1.48506 * 109.46920 * 305.83588 * 21 19 17 24 24 H 1.48499 * 109.47406 * 65.84169 * 21 19 17 25 25 C 1.47579 * 108.74183 * 1.22913 * 16 15 14 26 26 C 1.52103 * 111.59954 * 300.69057 * 13 12 11 27 27 C 1.46925 * 120.55545 * 5.68570 * 10 8 7 28 28 N 1.28473 * 124.88601 * 95.01519 * 4 2 1 29 29 H 1.08997 * 109.46966 * 59.99052 * 1 2 3 30 30 H 1.08992 * 109.47420 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46724 * 299.99984 * 1 2 3 32 32 H 1.09005 * 109.46724 * 240.00016 * 2 1 3 33 33 H 1.09001 * 109.46935 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47345 * 300.00397 * 3 2 1 35 35 H 1.09002 * 109.46689 * 60.00289 * 3 2 1 36 36 H 1.07999 * 126.38322 * 0.02719 * 5 4 2 37 37 H 1.07998 * 127.24565 * 180.23926 * 6 5 4 38 38 H 1.09002 * 109.59870 * 5.90645 * 11 10 8 39 39 H 1.08995 * 109.73171 * 245.50331 * 11 10 8 40 40 H 1.09004 * 109.47281 * 293.31272 * 12 11 10 41 41 H 1.09003 * 109.47710 * 173.29695 * 12 11 10 42 42 H 1.08993 * 110.73588 * 324.98138 * 14 13 12 43 43 H 1.09007 * 110.72870 * 201.67598 * 14 13 12 44 44 H 1.08996 * 109.87725 * 262.07633 * 15 14 13 45 45 H 1.09012 * 109.87992 * 140.93024 * 15 14 13 46 46 H 0.97001 * 119.99996 * 5.01522 * 20 19 17 47 47 H 1.09006 * 110.36969 * 95.26291 * 25 16 15 48 48 H 1.09002 * 110.37885 * 217.60789 * 25 16 15 49 49 H 1.09005 * 109.47635 * 179.29470 * 26 13 12 50 50 H 1.08998 * 109.47883 * 299.31236 * 26 13 12 51 51 H 1.09003 * 109.60117 * 354.08494 * 27 10 8 52 52 H 1.08992 * 109.60277 * 114.56369 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1844 -0.1154 2.4064 6 6 2.6432 -1.0731 3.2460 7 6 2.7472 -2.2459 2.4612 8 6 3.2070 -3.5725 2.9198 9 8 3.4143 -3.7689 4.1015 10 7 3.3970 -4.5653 2.0282 11 6 3.7336 -5.9219 2.4814 12 6 2.7220 -6.9056 1.8810 13 6 2.6685 -6.7190 0.3724 14 6 4.0275 -7.0791 -0.2657 15 6 3.9442 -8.6146 -0.4090 16 7 2.5194 -8.9789 -0.3921 17 6 2.0202 -10.2513 -0.4764 18 1 0.9569 -10.4210 -0.3913 19 6 2.8807 -11.3229 -0.6713 20 7 2.4998 -12.5402 -0.3467 21 14 4.5792 -11.0373 -1.3943 22 1 5.2424 -12.3447 -1.6315 23 1 4.4531 -10.3057 -2.6804 24 1 5.3925 -10.2347 -0.4458 25 6 1.7162 -7.7463 -0.2758 26 6 2.2623 -5.3020 -0.0025 27 6 3.2712 -4.3090 0.5870 28 7 2.3502 -1.9309 1.2444 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.9839 0.9153 2.6587 37 1 2.8816 -0.9643 4.2937 38 1 3.6855 -5.9664 3.5694 39 1 4.7384 -6.1823 2.1488 40 1 1.7359 -6.7172 2.3057 41 1 3.0276 -7.9264 2.1104 42 1 4.8495 -6.7969 0.3921 43 1 4.1329 -6.6055 -1.2418 44 1 4.4589 -9.0930 0.4242 45 1 4.3947 -8.9239 -1.3523 46 1 1.5935 -12.6991 -0.0397 47 1 1.3998 -7.4051 -1.2615 48 1 0.8501 -7.9166 0.3638 49 1 2.2472 -5.2034 -1.0880 50 1 1.2698 -5.0910 0.3955 51 1 2.9182 -3.2903 0.4261 52 1 4.2400 -4.4429 0.1059 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035232572.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:27 Heat of formation + Delta-G solvation = 68.291508 kcal Electronic energy + Delta-G solvation = -31780.536907 eV Core-core repulsion = 27782.370131 eV Total energy + Delta-G solvation = -3998.166776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.72685 -41.52663 -39.94957 -37.39134 -36.72554 -34.95396 -33.12886 -32.53731 -31.88978 -31.00631 -30.62212 -28.70179 -28.18589 -25.92766 -25.19104 -24.22319 -24.00019 -23.12981 -22.22929 -21.11902 -20.90745 -19.86888 -18.97509 -18.29058 -17.81075 -17.13983 -17.01350 -16.79676 -16.76563 -16.06607 -15.52621 -15.43520 -15.18725 -15.08008 -15.02509 -14.68778 -14.57136 -14.30706 -14.07582 -14.03793 -13.75570 -13.57623 -13.22463 -13.17960 -13.05991 -13.03335 -12.88707 -12.59665 -12.32825 -12.28772 -12.10926 -12.02487 -11.87078 -11.63857 -11.59868 -11.38306 -11.33125 -10.91678 -10.72160 -10.58148 -10.23044 -10.04613 -9.60662 -9.11161 -8.64426 -5.41591 0.50130 1.21866 1.40771 1.46053 1.50557 1.71928 2.02772 2.33438 2.54683 3.08438 3.26284 3.36332 3.54302 3.61685 3.74220 3.81971 3.90739 3.93871 4.05783 4.09302 4.11996 4.24539 4.29112 4.31569 4.44740 4.57719 4.61489 4.66515 4.68566 4.69945 4.72801 4.75189 4.78340 4.83701 4.84898 4.89146 4.90290 5.02509 5.04160 5.06912 5.07985 5.21495 5.24096 5.27019 5.32689 5.39039 5.43557 5.54498 5.65317 6.01068 6.10059 6.34424 6.84539 6.88136 7.14391 7.48503 8.13287 8.87546 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.002624 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.189392 B =10667.865533 C =11323.325752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 C -0.160 4.160 4 N -0.271 5.271 5 C 0.007 3.993 6 C -0.203 4.203 7 C -0.040 4.040 8 C 0.595 3.405 9 O -0.578 6.578 10 N -0.593 5.593 11 C 0.119 3.881 12 C -0.104 4.104 13 C -0.060 4.060 14 C -0.109 4.109 15 C 0.104 3.896 16 N -0.631 5.631 17 C -0.312 4.312 18 H 0.042 0.958 19 C -0.085 4.085 20 N -0.963 5.963 21 Si 1.109 2.891 22 H -0.314 1.314 23 H -0.284 1.284 24 H -0.246 1.246 25 C 0.143 3.857 26 C -0.100 4.100 27 C 0.081 3.919 28 N -0.267 5.267 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.220 0.780 37 H 0.161 0.839 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.031 0.969 45 H 0.023 0.977 46 H 0.245 0.755 47 H 0.032 0.968 48 H 0.025 0.975 49 H 0.094 0.906 50 H 0.058 0.942 51 H 0.145 0.855 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 37.672 -0.599 37.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 C -0.218 4.218 4 N -0.060 5.060 5 C -0.137 4.137 6 C -0.231 4.231 7 C -0.197 4.197 8 C 0.383 3.617 9 O -0.457 6.457 10 N -0.324 5.324 11 C -0.003 4.003 12 C -0.142 4.142 13 C -0.061 4.061 14 C -0.147 4.147 15 C -0.020 4.020 16 N -0.358 5.358 17 C -0.440 4.440 18 H 0.060 0.940 19 C -0.277 4.277 20 N -0.608 5.608 21 Si 0.936 3.064 22 H -0.243 1.243 23 H -0.212 1.212 24 H -0.171 1.171 25 C 0.018 3.982 26 C -0.139 4.139 27 C -0.042 4.042 28 N -0.104 5.104 29 H 0.123 0.877 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.237 0.763 37 H 0.178 0.822 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.043 0.957 49 H 0.112 0.888 50 H 0.077 0.923 51 H 0.161 0.839 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.684 36.380 -1.546 36.452 hybrid contribution -2.066 -0.386 1.341 2.493 sum -0.382 35.994 -0.205 35.997 Atomic orbital electron populations 1.22229 0.92132 1.02834 1.04867 1.22013 0.96058 0.94550 0.84153 1.22214 1.02177 0.91724 1.05642 1.46428 1.43399 1.05345 1.10792 1.23256 1.04194 1.01809 0.84430 1.21947 1.08097 0.91200 1.01826 1.21750 1.10200 0.95643 0.92146 1.17429 0.76572 0.82924 0.84765 1.90736 1.54356 1.82685 1.17935 1.48012 1.67812 1.08662 1.07947 1.21622 0.98541 0.80125 1.00028 1.21517 0.99148 0.98770 0.94803 1.21032 0.95547 0.95086 0.94401 1.22659 0.97292 0.92604 1.02108 1.22120 0.85613 0.96816 0.97456 1.44940 1.01856 1.01885 1.87141 1.19998 0.93045 0.84022 1.46973 0.94021 1.27092 1.08767 0.91693 1.00168 1.71043 1.18651 1.23091 1.48023 0.83424 0.72610 0.73392 0.76925 1.24339 1.21198 1.17057 1.21722 0.93629 0.85748 0.97104 1.21589 0.98935 0.91500 1.01866 1.22833 1.00061 1.03637 0.77639 1.72988 1.17548 0.98991 1.20831 0.87698 0.93415 0.91228 0.86907 0.91736 0.87618 0.90040 0.76343 0.82178 0.90263 0.89715 0.92904 0.92151 0.88955 0.88972 0.95122 0.95926 0.94607 0.94980 0.95703 0.88787 0.92339 0.83864 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 9.52 71.98 0.69 -0.12 16 2 C 0.13 0.76 3.80 44.99 0.17 0.93 16 3 C -0.16 -0.06 8.81 71.98 0.63 0.57 16 4 N -0.27 -3.57 3.22 -327.38 -1.05 -4.63 16 5 C 0.01 0.08 10.54 83.54 0.88 0.96 16 6 C -0.20 -3.94 10.82 22.41 0.24 -3.70 16 7 C -0.04 -0.98 6.86 42.46 0.29 -0.69 16 8 C 0.59 17.97 7.69 86.75 0.67 18.64 16 9 O -0.58 -21.11 16.36 -3.93 -0.06 -21.18 16 10 N -0.59 -16.14 2.96 -821.85 -2.43 -18.57 16 11 C 0.12 3.43 6.11 86.41 0.53 3.95 16 12 C -0.10 -3.38 4.87 30.41 0.15 -3.23 16 13 C -0.06 -1.84 0.55 -51.84 -0.03 -1.87 16 14 C -0.11 -3.29 4.92 31.56 0.16 -3.14 16 15 C 0.10 4.39 4.20 86.76 0.36 4.75 16 16 N -0.63 -31.33 3.34 -692.30 -2.31 -33.65 16 17 C -0.31 -18.80 10.52 84.03 0.88 -17.92 16 18 H 0.04 2.73 8.06 -2.91 -0.02 2.70 16 19 C -0.08 -5.24 5.48 84.86 0.47 -4.78 16 20 N -0.96 -64.29 13.70 21.65 0.30 -63.99 16 21 Si 1.11 55.30 24.57 68.60 1.69 56.98 16 22 H -0.31 -16.15 7.11 99.48 0.71 -15.44 16 23 H -0.28 -13.32 6.95 99.48 0.69 -12.63 16 24 H -0.25 -10.76 5.24 99.48 0.52 -10.24 16 25 C 0.14 5.75 6.16 86.63 0.53 6.29 16 26 C -0.10 -2.41 4.84 30.41 0.15 -2.26 16 27 C 0.08 1.78 6.05 86.41 0.52 2.30 16 28 N -0.27 -5.33 8.38 -48.18 -0.40 -5.74 16 29 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.08 -0.13 7.06 -2.39 -0.02 -0.15 16 36 H 0.22 0.59 7.16 -2.91 -0.02 0.57 16 37 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.08 2.48 7.03 -2.39 -0.02 2.46 16 39 H 0.08 2.20 6.55 -2.39 -0.02 2.19 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 2.28 7.82 -2.39 -0.02 2.26 16 42 H 0.09 2.40 6.18 -2.39 -0.01 2.39 16 43 H 0.09 2.36 7.98 -2.38 -0.02 2.34 16 44 H 0.03 1.38 6.52 -2.39 -0.02 1.37 16 45 H 0.02 1.00 4.29 -2.38 -0.01 0.99 16 46 H 0.24 16.45 8.73 -92.71 -0.81 15.64 16 47 H 0.03 1.24 8.00 -2.38 -0.02 1.22 16 48 H 0.02 1.06 8.03 -2.39 -0.02 1.04 16 49 H 0.09 1.93 8.09 -2.38 -0.02 1.91 16 50 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.14 2.99 3.76 -75.10 -0.28 2.71 16 52 H 0.08 1.53 7.62 -2.39 -0.02 1.51 16 Total: -1.00 -83.24 389.62 3.41 -79.83 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.40 Total: 10.25 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 7.29 Total: 0.68 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -5.91 Total: -126.57 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.06 Total: -21.18 kcal Atomic # 14 Polarization: 55.30 SS G_CDS: 1.69 Total: 56.98 kcal Total: -83.24 3.41 -79.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035232572.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.125 kcal (2) G-P(sol) polarization free energy of solvation -83.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds