Wall clock time and date at job start Wed Apr 1 2020 04:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46954 * 2 1 4 4 N 1.46503 * 109.47439 * 119.99926 * 2 1 3 5 5 C 1.34950 * 126.03673 * 275.02892 * 4 2 1 6 6 C 1.35320 * 107.74432 * 179.74620 * 5 4 2 7 7 C 1.39871 * 107.91964 * 0.39581 * 6 5 4 8 8 C 1.50700 * 125.89949 * 179.86340 * 7 6 5 9 9 C 1.50696 * 109.47186 * 124.71339 * 8 7 6 10 10 O 1.21282 * 119.99881 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00012 * 179.72675 * 9 8 7 12 12 C 1.46527 * 120.97791 * 0.27568 * 11 9 8 13 13 C 1.51788 * 110.13609 * 233.77260 * 12 11 9 14 14 C 1.49509 * 115.07031 * 318.39843 * 13 12 11 15 15 H 1.08998 * 105.92183 * 156.45233 * 14 13 12 16 16 C 1.52668 * 116.97121 * 40.04078 * 14 13 12 17 17 H 1.09001 * 112.03244 * 82.85108 * 16 14 13 18 18 C 1.56117 * 101.71744 * 202.84471 * 16 14 13 19 19 C 1.55094 * 101.08124 * 37.84338 * 18 16 14 20 20 N 1.46261 * 114.17694 * 272.08114 * 14 13 12 21 21 C 1.36939 * 125.96237 * 315.57301 * 20 14 13 22 22 H 1.08001 * 120.00189 * 349.53692 * 21 20 14 23 23 C 1.38809 * 120.00138 * 169.53478 * 21 20 14 24 24 N 1.31622 * 119.99710 * 350.25201 * 23 21 20 25 25 Si 1.86795 * 120.00316 * 170.24682 * 23 21 20 26 26 H 1.48495 * 109.47157 * 94.47105 * 25 23 21 27 27 H 1.48502 * 109.47264 * 214.47584 * 25 23 21 28 28 H 1.48505 * 109.47131 * 334.47211 * 25 23 21 29 29 C 1.46697 * 120.97672 * 179.97438 * 11 9 8 30 30 N 1.30836 * 108.19986 * 359.59947 * 7 6 5 31 31 H 1.08997 * 109.47243 * 299.99602 * 1 2 3 32 32 H 1.09000 * 109.47423 * 59.99890 * 1 2 3 33 33 H 1.09005 * 109.47171 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47659 * 240.00091 * 2 1 3 35 35 H 1.08997 * 109.46821 * 60.00139 * 3 2 1 36 36 H 1.08997 * 109.46838 * 179.97438 * 3 2 1 37 37 H 1.08993 * 109.47189 * 299.99904 * 3 2 1 38 38 H 1.07998 * 126.12870 * 359.97438 * 5 4 2 39 39 H 1.07995 * 126.03588 * 180.27255 * 6 5 4 40 40 H 1.09002 * 109.46874 * 4.71584 * 8 7 6 41 41 H 1.08998 * 109.47068 * 244.71758 * 8 7 6 42 42 H 1.09003 * 109.36029 * 353.97644 * 12 11 9 43 43 H 1.08998 * 109.36465 * 113.56972 * 12 11 9 44 44 H 1.09005 * 108.35871 * 79.84735 * 13 12 11 45 45 H 1.09004 * 108.35853 * 197.12302 * 13 12 11 46 46 H 1.09010 * 111.09983 * 279.89588 * 18 16 14 47 47 H 1.08994 * 111.14069 * 155.81315 * 18 16 14 48 48 H 1.09005 * 110.35417 * 204.08179 * 19 18 16 49 49 H 1.09004 * 110.44060 * 81.84884 * 19 18 16 50 50 H 0.96997 * 119.99919 * 179.97438 * 24 23 21 51 51 H 1.09008 * 109.52750 * 241.06869 * 29 11 9 52 52 H 1.08999 * 109.52985 * 1.28108 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1929 -0.1393 2.4155 6 6 2.6509 -1.1066 3.2437 7 6 2.7688 -2.2871 2.5029 8 6 3.2470 -3.6161 3.0284 9 6 2.2069 -4.6703 2.7494 10 8 1.1784 -4.3718 2.1803 11 7 2.4219 -5.9458 3.1279 12 6 3.6565 -6.3301 3.8172 13 6 4.3257 -7.4809 3.0879 14 6 3.3976 -8.5461 2.5987 15 1 3.9152 -9.0386 1.7755 16 6 2.0673 -8.0871 2.0069 17 1 2.1641 -7.7944 0.9614 18 6 1.1852 -9.3632 2.1824 19 6 1.6756 -9.8774 3.5610 20 7 3.1269 -9.5999 3.5762 21 6 4.0564 -10.2215 4.3668 22 1 5.1097 -10.0683 4.1842 23 6 3.6446 -11.0483 5.4030 24 7 2.3754 -11.0867 5.7495 25 14 4.8917 -12.1064 6.3054 26 1 5.3604 -11.3920 7.5199 27 1 4.2583 -13.3904 6.6998 28 1 6.0478 -12.3781 5.4139 29 6 1.4239 -6.9890 2.8676 30 7 2.3867 -2.0397 1.2763 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.9980 0.8886 2.6834 39 1 2.8861 -0.9874 4.2910 40 1 3.4116 -3.5437 4.1035 41 1 4.1805 -3.8872 2.5353 42 1 4.3347 -5.4773 3.8460 43 1 3.4210 -6.6364 4.8364 44 1 4.8664 -7.0768 2.2320 45 1 5.0479 -7.9411 3.7623 46 1 1.3881 -10.0916 1.3972 47 1 0.1260 -9.1078 2.2131 48 1 1.4934 -10.9481 3.6530 49 1 1.1782 -9.3383 4.3673 50 1 2.0876 -11.6648 6.4733 51 1 1.0859 -7.4139 3.8129 52 1 0.5754 -6.5573 2.3369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036777580.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:46 Heat of formation + Delta-G solvation = 71.758046 kcal Electronic energy + Delta-G solvation = -31156.442144 eV Core-core repulsion = 27158.425689 eV Total energy + Delta-G solvation = -3998.016456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.34206 -39.95025 -38.13699 -36.07328 -35.04130 -32.87160 -31.94533 -31.66820 -30.01295 -29.44672 -28.34684 -27.71152 -27.32529 -25.08345 -23.92611 -22.85965 -22.51700 -20.56157 -20.18385 -20.10347 -19.10115 -17.97383 -17.25707 -16.86902 -16.30230 -15.78758 -15.43074 -15.12233 -14.97982 -14.69771 -14.39489 -14.08356 -13.91697 -13.79292 -13.48377 -13.42128 -13.04812 -12.86167 -12.79182 -12.54148 -12.48638 -12.30304 -12.03555 -11.95896 -11.70021 -11.66462 -11.48299 -11.34016 -11.21024 -10.93992 -10.73855 -10.53269 -10.47727 -10.15215 -10.03802 -9.83737 -9.67213 -9.61488 -9.48743 -9.17327 -8.58126 -8.57259 -8.11901 -6.76035 -5.75402 -3.07205 1.89091 2.37459 2.72370 2.95311 3.38020 3.44345 3.45220 3.46382 4.15131 4.48246 4.48467 4.59128 4.63277 4.67541 4.84934 5.03979 5.07411 5.20816 5.22607 5.27263 5.31552 5.32948 5.39018 5.43530 5.51265 5.51908 5.57972 5.59486 5.65399 5.79532 5.80195 5.81273 5.92908 5.98869 6.01976 6.17053 6.31265 6.37609 6.40030 6.47004 6.60073 6.65543 6.72240 6.83531 6.99378 7.00018 7.05604 7.51598 7.59947 7.77286 7.77947 7.82288 8.26113 8.51954 9.18630 9.82181 10.52222 11.37758 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.002237 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.010032 B =12514.389939 C =13097.731904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.155 3.845 3 C -0.163 4.163 4 N -0.368 5.368 5 C 0.048 3.952 6 C -0.266 4.266 7 C 0.085 3.915 8 C -0.059 4.059 9 C 0.517 3.483 10 O -0.536 6.536 11 N -0.605 5.605 12 C 0.116 3.884 13 C -0.135 4.135 14 C 0.172 3.828 15 H 0.007 0.993 16 C -0.105 4.105 17 H 0.076 0.924 18 C -0.144 4.144 19 C 0.173 3.827 20 N -0.591 5.591 21 C -0.226 4.226 22 H 0.075 0.925 23 C -0.005 4.005 24 N -0.915 5.915 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.123 3.877 30 N -0.261 5.261 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.168 0.832 39 H 0.145 0.855 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.049 0.951 45 H 0.083 0.917 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.030 0.970 50 H 0.252 0.748 51 H 0.077 0.923 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 23.227 -8.279 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.053 3.947 3 C -0.221 4.221 4 N -0.151 5.151 5 C -0.097 4.097 6 C -0.296 4.296 7 C -0.082 4.082 8 C -0.100 4.100 9 C 0.304 3.696 10 O -0.413 6.413 11 N -0.337 5.337 12 C -0.007 4.007 13 C -0.175 4.175 14 C 0.064 3.936 15 H 0.024 0.976 16 C -0.125 4.125 17 H 0.094 0.906 18 C -0.183 4.183 19 C 0.048 3.952 20 N -0.316 5.316 21 C -0.354 4.354 22 H 0.093 0.907 23 C -0.203 4.203 24 N -0.562 5.562 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.001 3.999 30 N -0.082 5.082 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.185 0.815 39 H 0.163 0.837 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.048 0.952 50 H 0.063 0.937 51 H 0.095 0.905 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.937 22.830 -9.703 24.824 hybrid contribution 0.829 -0.266 1.512 1.745 sum -0.108 22.564 -8.191 24.005 Atomic orbital electron populations 1.22236 0.93659 1.03692 1.02728 1.21215 0.94867 0.92472 0.86105 1.22187 1.02242 0.94151 1.03512 1.48849 1.50639 1.07311 1.08347 1.22336 1.01752 0.99705 0.85920 1.21326 1.14634 0.92462 1.01156 1.21565 0.99823 0.95136 0.91697 1.20064 0.98753 0.88358 1.02868 1.20242 0.87853 0.82737 0.78769 1.90693 1.28201 1.80716 1.41676 1.47961 1.20090 1.07531 1.58161 1.21323 0.85057 0.97556 0.96738 1.21220 0.99850 0.96120 1.00272 1.19461 0.92716 0.89041 0.92373 0.97554 1.22401 0.96610 0.95306 0.98168 0.90609 1.23276 0.97958 0.96110 1.00994 1.21462 0.83814 0.99756 0.90127 1.44522 1.04118 1.37975 1.45011 1.18903 0.87824 1.21344 1.07332 0.90680 1.24816 0.96325 1.01313 0.97796 1.69956 1.13905 1.41440 1.30893 0.86181 0.80316 0.80084 0.79631 1.21679 1.21717 1.20652 1.21741 0.90793 0.87061 1.00331 1.77438 1.18794 0.91968 1.20039 0.92030 0.90660 0.91261 0.88100 0.91601 0.91523 0.90063 0.81499 0.83678 0.87143 0.87447 0.90761 0.90938 0.93257 0.89841 0.92054 0.91962 0.92019 0.95161 0.93743 0.90462 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.52 37.16 0.35 -0.93 16 2 C 0.16 1.30 3.93 -67.93 -0.27 1.03 16 3 C -0.16 -0.84 8.84 37.16 0.33 -0.51 16 4 N -0.37 -4.37 3.53 -54.86 -0.19 -4.56 16 5 C 0.05 0.49 10.59 -17.22 -0.18 0.31 16 6 C -0.27 -3.09 10.72 -40.01 -0.43 -3.52 16 7 C 0.09 1.20 6.02 -82.41 -0.50 0.70 16 8 C -0.06 -0.75 4.63 -29.04 -0.13 -0.88 16 9 C 0.52 8.57 7.70 -10.99 -0.08 8.48 16 10 O -0.54 -10.80 14.99 5.56 0.08 -10.72 16 11 N -0.60 -10.00 2.94 -173.84 -0.51 -10.51 16 12 C 0.12 1.77 6.39 -4.64 -0.03 1.74 16 13 C -0.13 -2.32 5.62 -29.07 -0.16 -2.49 16 14 C 0.17 3.46 2.63 -69.95 -0.18 3.28 16 15 H 0.01 0.15 8.06 -51.93 -0.42 -0.27 16 16 C -0.10 -1.91 3.70 -88.79 -0.33 -2.24 16 17 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 18 C -0.14 -2.72 6.46 -23.95 -0.15 -2.88 16 19 C 0.17 4.07 4.94 -2.24 -0.01 4.06 16 20 N -0.59 -14.32 3.32 -165.70 -0.55 -14.87 16 21 C -0.23 -5.96 9.37 -15.06 -0.14 -6.11 16 22 H 0.08 1.92 7.37 -52.49 -0.39 1.54 16 23 C -0.01 -0.15 5.41 -17.43 -0.09 -0.24 16 24 N -0.92 -26.16 10.76 55.49 0.60 -25.57 16 25 Si 0.91 21.52 29.56 -169.99 -5.03 16.49 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.12 2.20 5.57 -3.60 -0.02 2.18 16 30 N -0.26 -4.06 11.92 33.67 0.40 -3.65 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.29 7.16 -51.93 -0.37 -0.08 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.17 1.07 7.26 -52.49 -0.38 0.69 16 39 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.11 7.92 -51.93 -0.41 0.70 16 41 H 0.11 1.19 7.71 -51.93 -0.40 0.79 16 42 H 0.07 0.87 5.94 -51.93 -0.31 0.56 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.55 6.81 -51.93 -0.35 1.20 16 46 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 47 H 0.06 1.05 7.98 -51.93 -0.41 0.64 16 48 H 0.06 1.62 7.17 -51.93 -0.37 1.25 16 49 H 0.03 0.77 6.94 -51.93 -0.36 0.41 16 50 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 51 H 0.08 1.51 6.50 -51.92 -0.34 1.17 16 52 H 0.08 1.50 7.00 -51.93 -0.36 1.14 16 LS Contribution 402.01 15.07 6.06 6.06 Total: -1.00 -34.03 402.01 -9.84 -43.87 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.67 Total: 1.45 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.04 Total: 2.01 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.25 Total: -59.17 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.03 -9.84 -43.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036777580.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.631 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds