Wall clock time and date at job start Wed Apr 1 2020 04:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46954 * 2 1 4 4 N 1.46503 * 109.47439 * 119.99926 * 2 1 3 5 5 C 1.34950 * 126.03673 * 275.02892 * 4 2 1 6 6 C 1.35320 * 107.74432 * 179.74620 * 5 4 2 7 7 C 1.39871 * 107.91964 * 0.39581 * 6 5 4 8 8 C 1.50700 * 125.89949 * 179.86340 * 7 6 5 9 9 C 1.50696 * 109.47186 * 124.71339 * 8 7 6 10 10 O 1.21282 * 119.99881 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00012 * 179.72675 * 9 8 7 12 12 C 1.46527 * 120.97791 * 0.27568 * 11 9 8 13 13 C 1.51788 * 110.13609 * 233.77260 * 12 11 9 14 14 C 1.49509 * 115.07031 * 318.39843 * 13 12 11 15 15 H 1.08998 * 105.92183 * 156.45233 * 14 13 12 16 16 C 1.52668 * 116.97121 * 40.04078 * 14 13 12 17 17 H 1.09001 * 112.03244 * 82.85108 * 16 14 13 18 18 C 1.56117 * 101.71744 * 202.84471 * 16 14 13 19 19 C 1.55094 * 101.08124 * 37.84338 * 18 16 14 20 20 N 1.46261 * 114.17694 * 272.08114 * 14 13 12 21 21 C 1.36939 * 125.96237 * 315.57301 * 20 14 13 22 22 H 1.08001 * 120.00189 * 349.53692 * 21 20 14 23 23 C 1.38809 * 120.00138 * 169.53478 * 21 20 14 24 24 N 1.31622 * 119.99710 * 350.25201 * 23 21 20 25 25 Si 1.86795 * 120.00316 * 170.24682 * 23 21 20 26 26 H 1.48495 * 109.47157 * 94.47105 * 25 23 21 27 27 H 1.48502 * 109.47264 * 214.47584 * 25 23 21 28 28 H 1.48505 * 109.47131 * 334.47211 * 25 23 21 29 29 C 1.46697 * 120.97672 * 179.97438 * 11 9 8 30 30 N 1.30836 * 108.19986 * 359.59947 * 7 6 5 31 31 H 1.08997 * 109.47243 * 299.99602 * 1 2 3 32 32 H 1.09000 * 109.47423 * 59.99890 * 1 2 3 33 33 H 1.09005 * 109.47171 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47659 * 240.00091 * 2 1 3 35 35 H 1.08997 * 109.46821 * 60.00139 * 3 2 1 36 36 H 1.08997 * 109.46838 * 179.97438 * 3 2 1 37 37 H 1.08993 * 109.47189 * 299.99904 * 3 2 1 38 38 H 1.07998 * 126.12870 * 359.97438 * 5 4 2 39 39 H 1.07995 * 126.03588 * 180.27255 * 6 5 4 40 40 H 1.09002 * 109.46874 * 4.71584 * 8 7 6 41 41 H 1.08998 * 109.47068 * 244.71758 * 8 7 6 42 42 H 1.09003 * 109.36029 * 353.97644 * 12 11 9 43 43 H 1.08998 * 109.36465 * 113.56972 * 12 11 9 44 44 H 1.09005 * 108.35871 * 79.84735 * 13 12 11 45 45 H 1.09004 * 108.35853 * 197.12302 * 13 12 11 46 46 H 1.09010 * 111.09983 * 279.89588 * 18 16 14 47 47 H 1.08994 * 111.14069 * 155.81315 * 18 16 14 48 48 H 1.09005 * 110.35417 * 204.08179 * 19 18 16 49 49 H 1.09004 * 110.44060 * 81.84884 * 19 18 16 50 50 H 0.96997 * 119.99919 * 179.97438 * 24 23 21 51 51 H 1.09008 * 109.52750 * 241.06869 * 29 11 9 52 52 H 1.08999 * 109.52985 * 1.28108 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1929 -0.1393 2.4155 6 6 2.6509 -1.1066 3.2437 7 6 2.7688 -2.2871 2.5029 8 6 3.2470 -3.6161 3.0284 9 6 2.2069 -4.6703 2.7494 10 8 1.1784 -4.3718 2.1803 11 7 2.4219 -5.9458 3.1279 12 6 3.6565 -6.3301 3.8172 13 6 4.3257 -7.4809 3.0879 14 6 3.3976 -8.5461 2.5987 15 1 3.9152 -9.0386 1.7755 16 6 2.0673 -8.0871 2.0069 17 1 2.1641 -7.7944 0.9614 18 6 1.1852 -9.3632 2.1824 19 6 1.6756 -9.8774 3.5610 20 7 3.1269 -9.5999 3.5762 21 6 4.0564 -10.2215 4.3668 22 1 5.1097 -10.0683 4.1842 23 6 3.6446 -11.0483 5.4030 24 7 2.3754 -11.0867 5.7495 25 14 4.8917 -12.1064 6.3054 26 1 5.3604 -11.3920 7.5199 27 1 4.2583 -13.3904 6.6998 28 1 6.0478 -12.3781 5.4139 29 6 1.4239 -6.9890 2.8676 30 7 2.3867 -2.0397 1.2763 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.9980 0.8886 2.6834 39 1 2.8861 -0.9874 4.2910 40 1 3.4116 -3.5437 4.1035 41 1 4.1805 -3.8872 2.5353 42 1 4.3347 -5.4773 3.8460 43 1 3.4210 -6.6364 4.8364 44 1 4.8664 -7.0768 2.2320 45 1 5.0479 -7.9411 3.7623 46 1 1.3881 -10.0916 1.3972 47 1 0.1260 -9.1078 2.2131 48 1 1.4934 -10.9481 3.6530 49 1 1.1782 -9.3383 4.3673 50 1 2.0876 -11.6648 6.4733 51 1 1.0859 -7.4139 3.8129 52 1 0.5754 -6.5573 2.3369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036777580.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:45 Heat of formation + Delta-G solvation = 51.182919 kcal Electronic energy + Delta-G solvation = -31157.334349 eV Core-core repulsion = 27158.425689 eV Total energy + Delta-G solvation = -3998.908660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.21161 -41.34290 -39.64394 -36.80040 -36.53386 -34.64468 -33.29291 -32.92167 -31.16415 -30.82335 -29.64523 -28.69189 -28.18479 -26.76013 -25.56413 -23.99752 -23.64245 -21.96488 -21.61957 -20.95392 -20.33553 -19.45617 -18.42027 -18.05486 -17.82664 -17.13393 -16.81321 -16.41799 -16.27013 -15.92893 -15.63899 -15.43091 -15.14182 -14.80190 -14.63864 -14.44682 -14.33491 -14.05749 -13.87040 -13.67535 -13.62254 -13.30709 -13.12630 -13.08232 -13.05211 -12.90568 -12.80736 -12.63886 -12.48599 -12.31005 -12.13884 -12.07314 -11.95313 -11.62716 -11.53266 -11.48893 -11.42369 -11.27529 -10.78314 -10.61328 -10.12570 -9.54265 -9.40740 -8.74917 -7.82396 -5.15340 1.05546 1.48736 1.50260 1.59080 1.64535 1.68686 1.78041 2.22325 2.53110 3.36227 3.47166 3.58642 3.71527 3.75446 3.83244 3.88902 3.94870 4.03867 4.04896 4.10833 4.21208 4.28679 4.30266 4.43136 4.52086 4.57873 4.58817 4.60599 4.64154 4.76037 4.79289 4.80909 4.84401 4.88560 4.95125 4.96406 5.01404 5.11063 5.15560 5.16279 5.18868 5.24738 5.38581 5.42257 5.53118 5.61465 5.63924 5.76110 5.77126 6.26115 6.28726 6.52867 6.89802 7.13241 7.23074 7.83142 8.52667 9.30198 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.002237 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.010032 B =12514.389939 C =13097.731904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 C -0.153 4.153 4 N -0.372 5.372 5 C 0.056 3.944 6 C -0.283 4.283 7 C 0.065 3.935 8 C -0.053 4.053 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.605 5.605 12 C 0.121 3.879 13 C -0.132 4.132 14 C 0.166 3.834 15 H -0.001 1.001 16 C -0.094 4.094 17 H 0.093 0.907 18 C -0.131 4.131 19 C 0.181 3.819 20 N -0.608 5.608 21 C -0.226 4.226 22 H 0.083 0.917 23 C -0.064 4.064 24 N -0.948 5.948 25 Si 0.971 3.029 26 H -0.286 1.286 27 H -0.300 1.300 28 H -0.270 1.270 29 C 0.130 3.870 30 N -0.317 5.317 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.033 0.967 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.207 0.793 39 H 0.167 0.833 40 H 0.141 0.859 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.025 0.975 49 H 0.003 0.997 50 H 0.245 0.755 51 H 0.055 0.945 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 26.281 -8.856 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 C -0.211 4.211 4 N -0.155 5.155 5 C -0.090 4.090 6 C -0.312 4.312 7 C -0.102 4.102 8 C -0.094 4.094 9 C 0.305 3.695 10 O -0.455 6.455 11 N -0.337 5.337 12 C -0.001 4.001 13 C -0.172 4.172 14 C 0.059 3.941 15 H 0.017 0.983 16 C -0.114 4.114 17 H 0.112 0.888 18 C -0.170 4.170 19 C 0.056 3.944 20 N -0.333 5.333 21 C -0.355 4.355 22 H 0.100 0.900 23 C -0.257 4.257 24 N -0.597 5.597 25 Si 0.800 3.200 26 H -0.213 1.213 27 H -0.227 1.227 28 H -0.194 1.194 29 C 0.007 3.993 30 N -0.139 5.139 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.224 0.776 39 H 0.185 0.815 40 H 0.159 0.841 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.043 0.957 49 H 0.021 0.979 50 H 0.054 0.946 51 H 0.073 0.927 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.632 25.905 -10.306 27.887 hybrid contribution 0.310 -1.155 1.606 2.002 sum 0.941 24.750 -8.700 26.251 Atomic orbital electron populations 1.22194 0.93336 1.01793 1.04333 1.21532 0.95142 0.94076 0.84844 1.22153 1.01898 0.91755 1.05258 1.49154 1.50149 1.06451 1.09771 1.22986 0.99893 1.01164 0.84980 1.21690 1.15174 0.91945 1.02387 1.21891 1.00153 0.96243 0.91879 1.20161 0.97815 0.86542 1.04900 1.20940 0.88062 0.82942 0.77516 1.90677 1.30183 1.81260 1.43424 1.48004 1.20044 1.07452 1.58197 1.21371 0.85112 0.98590 0.95036 1.21142 0.99000 0.95846 1.01207 1.19683 0.94118 0.89203 0.91079 0.98338 1.22351 0.95280 0.94799 0.98928 0.88836 1.23152 0.99229 0.96516 0.98106 1.21216 0.83963 0.97210 0.92032 1.44747 1.03999 1.39497 1.45052 1.19257 0.88624 1.20744 1.06922 0.89964 1.25583 0.97940 1.03013 0.99196 1.70155 1.15682 1.42355 1.31498 0.85174 0.78387 0.77880 0.78548 1.21318 1.22696 1.19439 1.21497 0.91320 0.87438 0.99061 1.77331 1.20762 0.94389 1.21404 0.91490 0.87967 0.94802 0.89219 0.90250 0.91941 0.87907 0.77637 0.81515 0.84142 0.85426 0.86174 0.92940 0.90510 0.91099 0.91298 0.89987 0.95678 0.97906 0.94579 0.92669 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.52 71.98 0.69 -1.60 16 2 C 0.14 2.24 3.93 44.99 0.18 2.41 16 3 C -0.15 -1.12 8.84 71.99 0.64 -0.49 16 4 N -0.37 -8.36 3.53 -327.48 -1.15 -9.52 16 5 C 0.06 1.00 10.59 83.54 0.88 1.88 16 6 C -0.28 -5.91 10.72 21.99 0.24 -5.67 16 7 C 0.06 1.73 6.02 43.10 0.26 1.99 16 8 C -0.05 -1.22 4.63 29.10 0.13 -1.09 16 9 C 0.52 16.49 7.70 87.66 0.67 17.16 16 10 O -0.58 -23.25 14.99 -3.03 -0.05 -23.30 16 11 N -0.60 -19.32 2.94 -822.31 -2.41 -21.73 16 12 C 0.12 3.47 6.39 85.98 0.55 4.02 16 13 C -0.13 -4.34 5.62 29.08 0.16 -4.17 16 14 C 0.17 6.58 2.63 43.81 0.12 6.70 16 15 H 0.00 -0.04 8.06 -2.39 -0.02 -0.06 16 16 C -0.09 -3.35 3.70 -9.61 -0.04 -3.39 16 17 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 18 C -0.13 -4.96 6.46 32.39 0.21 -4.75 16 19 C 0.18 8.85 4.94 86.85 0.43 9.27 16 20 N -0.61 -29.96 3.32 -678.15 -2.25 -32.21 16 21 C -0.23 -12.10 9.37 84.03 0.79 -11.32 16 22 H 0.08 4.19 7.37 -2.91 -0.02 4.16 16 23 C -0.06 -3.55 5.41 84.86 0.46 -3.09 16 24 N -0.95 -56.33 10.76 21.65 0.23 -56.09 16 25 Si 0.97 44.94 29.56 68.60 2.03 46.97 16 26 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 29 C 0.13 4.66 5.57 86.56 0.48 5.14 16 30 N -0.32 -9.69 11.92 -47.38 -0.56 -10.25 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 0.39 7.16 -2.39 -0.02 0.37 16 36 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.21 1.82 7.26 -2.91 -0.02 1.79 16 39 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.14 2.32 7.92 -2.39 -0.02 2.30 16 41 H 0.13 2.40 7.71 -2.39 -0.02 2.38 16 42 H 0.12 2.35 5.94 -2.39 -0.01 2.33 16 43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.07 2.53 6.81 -2.38 -0.02 2.52 16 46 H 0.07 2.50 8.14 -2.38 -0.02 2.49 16 47 H 0.08 2.77 7.98 -2.39 -0.02 2.75 16 48 H 0.02 1.38 7.17 -2.38 -0.02 1.36 16 49 H 0.00 0.16 6.94 -2.38 -0.02 0.14 16 50 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 51 H 0.06 2.23 6.50 -2.38 -0.02 2.21 16 52 H 0.08 2.89 7.00 -2.39 -0.02 2.88 16 Total: -1.00 -78.31 402.01 3.58 -74.73 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.90 Total: 18.39 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.85 Total: 13.01 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -6.15 Total: -129.81 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -78.31 3.58 -74.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036777580.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.916 kcal (2) G-P(sol) polarization free energy of solvation -78.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds