Wall clock time and date at job start Wed Apr 1 2020 04:11:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53009 * 109.46954 * 2 1
4 4 N 1.46503 * 109.47439 * 119.99926 * 2 1 3
5 5 C 1.34950 * 126.03673 * 275.02892 * 4 2 1
6 6 C 1.35320 * 107.74432 * 179.74620 * 5 4 2
7 7 C 1.39871 * 107.91964 * 0.39581 * 6 5 4
8 8 C 1.50700 * 125.89949 * 179.86340 * 7 6 5
9 9 C 1.50696 * 109.47186 * 124.71339 * 8 7 6
10 10 O 1.21282 * 119.99881 * 359.97438 * 9 8 7
11 11 N 1.34771 * 120.00012 * 179.72675 * 9 8 7
12 12 C 1.46527 * 120.97791 * 0.27568 * 11 9 8
13 13 C 1.51788 * 110.13609 * 233.77260 * 12 11 9
14 14 C 1.49509 * 115.07031 * 318.39843 * 13 12 11
15 15 H 1.08998 * 105.92183 * 156.45233 * 14 13 12
16 16 C 1.52668 * 116.97121 * 40.04078 * 14 13 12
17 17 H 1.09001 * 112.03244 * 82.85108 * 16 14 13
18 18 C 1.56117 * 101.71744 * 202.84471 * 16 14 13
19 19 C 1.55094 * 101.08124 * 37.84338 * 18 16 14
20 20 N 1.46261 * 114.17694 * 272.08114 * 14 13 12
21 21 C 1.36939 * 125.96237 * 315.57301 * 20 14 13
22 22 H 1.08001 * 120.00189 * 349.53692 * 21 20 14
23 23 C 1.38809 * 120.00138 * 169.53478 * 21 20 14
24 24 N 1.31622 * 119.99710 * 350.25201 * 23 21 20
25 25 Si 1.86795 * 120.00316 * 170.24682 * 23 21 20
26 26 H 1.48495 * 109.47157 * 94.47105 * 25 23 21
27 27 H 1.48502 * 109.47264 * 214.47584 * 25 23 21
28 28 H 1.48505 * 109.47131 * 334.47211 * 25 23 21
29 29 C 1.46697 * 120.97672 * 179.97438 * 11 9 8
30 30 N 1.30836 * 108.19986 * 359.59947 * 7 6 5
31 31 H 1.08997 * 109.47243 * 299.99602 * 1 2 3
32 32 H 1.09000 * 109.47423 * 59.99890 * 1 2 3
33 33 H 1.09005 * 109.47171 * 180.02562 * 1 2 3
34 34 H 1.09000 * 109.47659 * 240.00091 * 2 1 3
35 35 H 1.08997 * 109.46821 * 60.00139 * 3 2 1
36 36 H 1.08997 * 109.46838 * 179.97438 * 3 2 1
37 37 H 1.08993 * 109.47189 * 299.99904 * 3 2 1
38 38 H 1.07998 * 126.12870 * 359.97438 * 5 4 2
39 39 H 1.07995 * 126.03588 * 180.27255 * 6 5 4
40 40 H 1.09002 * 109.46874 * 4.71584 * 8 7 6
41 41 H 1.08998 * 109.47068 * 244.71758 * 8 7 6
42 42 H 1.09003 * 109.36029 * 353.97644 * 12 11 9
43 43 H 1.08998 * 109.36465 * 113.56972 * 12 11 9
44 44 H 1.09005 * 108.35871 * 79.84735 * 13 12 11
45 45 H 1.09004 * 108.35853 * 197.12302 * 13 12 11
46 46 H 1.09010 * 111.09983 * 279.89588 * 18 16 14
47 47 H 1.08994 * 111.14069 * 155.81315 * 18 16 14
48 48 H 1.09005 * 110.35417 * 204.08179 * 19 18 16
49 49 H 1.09004 * 110.44060 * 81.84884 * 19 18 16
50 50 H 0.96997 * 119.99919 * 179.97438 * 24 23 21
51 51 H 1.09008 * 109.52750 * 241.06869 * 29 11 9
52 52 H 1.08999 * 109.52985 * 1.28108 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 7 2.0184 -0.6906 1.1962
5 6 2.1929 -0.1393 2.4155
6 6 2.6509 -1.1066 3.2437
7 6 2.7688 -2.2871 2.5029
8 6 3.2470 -3.6161 3.0284
9 6 2.2069 -4.6703 2.7494
10 8 1.1784 -4.3718 2.1803
11 7 2.4219 -5.9458 3.1279
12 6 3.6565 -6.3301 3.8172
13 6 4.3257 -7.4809 3.0879
14 6 3.3976 -8.5461 2.5987
15 1 3.9152 -9.0386 1.7755
16 6 2.0673 -8.0871 2.0069
17 1 2.1641 -7.7944 0.9614
18 6 1.1852 -9.3632 2.1824
19 6 1.6756 -9.8774 3.5610
20 7 3.1269 -9.5999 3.5762
21 6 4.0564 -10.2215 4.3668
22 1 5.1097 -10.0683 4.1842
23 6 3.6446 -11.0483 5.4030
24 7 2.3754 -11.0867 5.7495
25 14 4.8917 -12.1064 6.3054
26 1 5.3604 -11.3920 7.5199
27 1 4.2583 -13.3904 6.6998
28 1 6.0478 -12.3781 5.4139
29 6 1.4239 -6.9890 2.8676
30 7 2.3867 -2.0397 1.2763
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 -0.3634 -1.0277 0.0005
34 1 1.8934 -0.5138 -0.8900
35 1 1.6766 1.9563 0.8900
36 1 3.1299 1.4426 0.0005
37 1 1.6766 1.9564 -0.8899
38 1 1.9980 0.8886 2.6834
39 1 2.8861 -0.9874 4.2910
40 1 3.4116 -3.5437 4.1035
41 1 4.1805 -3.8872 2.5353
42 1 4.3347 -5.4773 3.8460
43 1 3.4210 -6.6364 4.8364
44 1 4.8664 -7.0768 2.2320
45 1 5.0479 -7.9411 3.7623
46 1 1.3881 -10.0916 1.3972
47 1 0.1260 -9.1078 2.2131
48 1 1.4934 -10.9481 3.6530
49 1 1.1782 -9.3383 4.3673
50 1 2.0876 -11.6648 6.4733
51 1 1.0859 -7.4139 3.8129
52 1 0.5754 -6.5573 2.3369
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036777580.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:11:45
Heat of formation + Delta-G solvation = 51.182919 kcal
Electronic energy + Delta-G solvation = -31157.334349 eV
Core-core repulsion = 27158.425689 eV
Total energy + Delta-G solvation = -3998.908660 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-42.21161 -41.34290 -39.64394 -36.80040 -36.53386 -34.64468 -33.29291 -32.92167
-31.16415 -30.82335 -29.64523 -28.69189 -28.18479 -26.76013 -25.56413 -23.99752
-23.64245 -21.96488 -21.61957 -20.95392 -20.33553 -19.45617 -18.42027 -18.05486
-17.82664 -17.13393 -16.81321 -16.41799 -16.27013 -15.92893 -15.63899 -15.43091
-15.14182 -14.80190 -14.63864 -14.44682 -14.33491 -14.05749 -13.87040 -13.67535
-13.62254 -13.30709 -13.12630 -13.08232 -13.05211 -12.90568 -12.80736 -12.63886
-12.48599 -12.31005 -12.13884 -12.07314 -11.95313 -11.62716 -11.53266 -11.48893
-11.42369 -11.27529 -10.78314 -10.61328 -10.12570 -9.54265 -9.40740 -8.74917
-7.82396 -5.15340 1.05546 1.48736 1.50260 1.59080 1.64535 1.68686
1.78041 2.22325 2.53110 3.36227 3.47166 3.58642 3.71527 3.75446
3.83244 3.88902 3.94870 4.03867 4.04896 4.10833 4.21208 4.28679
4.30266 4.43136 4.52086 4.57873 4.58817 4.60599 4.64154 4.76037
4.79289 4.80909 4.84401 4.88560 4.95125 4.96406 5.01404 5.11063
5.15560 5.16279 5.18868 5.24738 5.38581 5.42257 5.53118 5.61465
5.63924 5.76110 5.77126 6.26115 6.28726 6.52867 6.89802 7.13241
7.23074 7.83142 8.52667 9.30198
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.024512 B = 0.002237 C = 0.002137
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1142.010032 B =12514.389939 C =13097.731904
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.145 3.855
3 C -0.153 4.153
4 N -0.372 5.372
5 C 0.056 3.944
6 C -0.283 4.283
7 C 0.065 3.935
8 C -0.053 4.053
9 C 0.516 3.484
10 O -0.576 6.576
11 N -0.605 5.605
12 C 0.121 3.879
13 C -0.132 4.132
14 C 0.166 3.834
15 H -0.001 1.001
16 C -0.094 4.094
17 H 0.093 0.907
18 C -0.131 4.131
19 C 0.181 3.819
20 N -0.608 5.608
21 C -0.226 4.226
22 H 0.083 0.917
23 C -0.064 4.064
24 N -0.948 5.948
25 Si 0.971 3.029
26 H -0.286 1.286
27 H -0.300 1.300
28 H -0.270 1.270
29 C 0.130 3.870
30 N -0.317 5.317
31 H 0.066 0.934
32 H 0.102 0.898
33 H 0.033 0.967
34 H 0.090 0.910
35 H 0.079 0.921
36 H 0.061 0.939
37 H 0.102 0.898
38 H 0.207 0.793
39 H 0.167 0.833
40 H 0.141 0.859
41 H 0.128 0.872
42 H 0.120 0.880
43 H 0.052 0.948
44 H 0.076 0.924
45 H 0.070 0.930
46 H 0.068 0.932
47 H 0.082 0.918
48 H 0.025 0.975
49 H 0.003 0.997
50 H 0.245 0.755
51 H 0.055 0.945
52 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.367 26.281 -8.856 27.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.044 3.956
3 C -0.211 4.211
4 N -0.155 5.155
5 C -0.090 4.090
6 C -0.312 4.312
7 C -0.102 4.102
8 C -0.094 4.094
9 C 0.305 3.695
10 O -0.455 6.455
11 N -0.337 5.337
12 C -0.001 4.001
13 C -0.172 4.172
14 C 0.059 3.941
15 H 0.017 0.983
16 C -0.114 4.114
17 H 0.112 0.888
18 C -0.170 4.170
19 C 0.056 3.944
20 N -0.333 5.333
21 C -0.355 4.355
22 H 0.100 0.900
23 C -0.257 4.257
24 N -0.597 5.597
25 Si 0.800 3.200
26 H -0.213 1.213
27 H -0.227 1.227
28 H -0.194 1.194
29 C 0.007 3.993
30 N -0.139 5.139
31 H 0.085 0.915
32 H 0.120 0.880
33 H 0.052 0.948
34 H 0.108 0.892
35 H 0.098 0.902
36 H 0.081 0.919
37 H 0.121 0.879
38 H 0.224 0.776
39 H 0.185 0.815
40 H 0.159 0.841
41 H 0.146 0.854
42 H 0.138 0.862
43 H 0.071 0.929
44 H 0.095 0.905
45 H 0.089 0.911
46 H 0.087 0.913
47 H 0.100 0.900
48 H 0.043 0.957
49 H 0.021 0.979
50 H 0.054 0.946
51 H 0.073 0.927
52 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 0.632 25.905 -10.306 27.887
hybrid contribution 0.310 -1.155 1.606 2.002
sum 0.941 24.750 -8.700 26.251
Atomic orbital electron populations
1.22194 0.93336 1.01793 1.04333 1.21532 0.95142 0.94076 0.84844
1.22153 1.01898 0.91755 1.05258 1.49154 1.50149 1.06451 1.09771
1.22986 0.99893 1.01164 0.84980 1.21690 1.15174 0.91945 1.02387
1.21891 1.00153 0.96243 0.91879 1.20161 0.97815 0.86542 1.04900
1.20940 0.88062 0.82942 0.77516 1.90677 1.30183 1.81260 1.43424
1.48004 1.20044 1.07452 1.58197 1.21371 0.85112 0.98590 0.95036
1.21142 0.99000 0.95846 1.01207 1.19683 0.94118 0.89203 0.91079
0.98338 1.22351 0.95280 0.94799 0.98928 0.88836 1.23152 0.99229
0.96516 0.98106 1.21216 0.83963 0.97210 0.92032 1.44747 1.03999
1.39497 1.45052 1.19257 0.88624 1.20744 1.06922 0.89964 1.25583
0.97940 1.03013 0.99196 1.70155 1.15682 1.42355 1.31498 0.85174
0.78387 0.77880 0.78548 1.21318 1.22696 1.19439 1.21497 0.91320
0.87438 0.99061 1.77331 1.20762 0.94389 1.21404 0.91490 0.87967
0.94802 0.89219 0.90250 0.91941 0.87907 0.77637 0.81515 0.84142
0.85426 0.86174 0.92940 0.90510 0.91099 0.91298 0.89987 0.95678
0.97906 0.94579 0.92669 0.90305
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.28 9.52 71.98 0.69 -1.60 16
2 C 0.14 2.24 3.93 44.99 0.18 2.41 16
3 C -0.15 -1.12 8.84 71.99 0.64 -0.49 16
4 N -0.37 -8.36 3.53 -327.48 -1.15 -9.52 16
5 C 0.06 1.00 10.59 83.54 0.88 1.88 16
6 C -0.28 -5.91 10.72 21.99 0.24 -5.67 16
7 C 0.06 1.73 6.02 43.10 0.26 1.99 16
8 C -0.05 -1.22 4.63 29.10 0.13 -1.09 16
9 C 0.52 16.49 7.70 87.66 0.67 17.16 16
10 O -0.58 -23.25 14.99 -3.03 -0.05 -23.30 16
11 N -0.60 -19.32 2.94 -822.31 -2.41 -21.73 16
12 C 0.12 3.47 6.39 85.98 0.55 4.02 16
13 C -0.13 -4.34 5.62 29.08 0.16 -4.17 16
14 C 0.17 6.58 2.63 43.81 0.12 6.70 16
15 H 0.00 -0.04 8.06 -2.39 -0.02 -0.06 16
16 C -0.09 -3.35 3.70 -9.61 -0.04 -3.39 16
17 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16
18 C -0.13 -4.96 6.46 32.39 0.21 -4.75 16
19 C 0.18 8.85 4.94 86.85 0.43 9.27 16
20 N -0.61 -29.96 3.32 -678.15 -2.25 -32.21 16
21 C -0.23 -12.10 9.37 84.03 0.79 -11.32 16
22 H 0.08 4.19 7.37 -2.91 -0.02 4.16 16
23 C -0.06 -3.55 5.41 84.86 0.46 -3.09 16
24 N -0.95 -56.33 10.76 21.65 0.23 -56.09 16
25 Si 0.97 44.94 29.56 68.60 2.03 46.97 16
26 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16
27 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16
28 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
29 C 0.13 4.66 5.57 86.56 0.48 5.14 16
30 N -0.32 -9.69 11.92 -47.38 -0.56 -10.25 16
31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16
33 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16
34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
35 H 0.08 0.39 7.16 -2.39 -0.02 0.37 16
36 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16
37 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16
38 H 0.21 1.82 7.26 -2.91 -0.02 1.79 16
39 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16
40 H 0.14 2.32 7.92 -2.39 -0.02 2.30 16
41 H 0.13 2.40 7.71 -2.39 -0.02 2.38 16
42 H 0.12 2.35 5.94 -2.39 -0.01 2.33 16
43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
44 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16
45 H 0.07 2.53 6.81 -2.38 -0.02 2.52 16
46 H 0.07 2.50 8.14 -2.38 -0.02 2.49 16
47 H 0.08 2.77 7.98 -2.39 -0.02 2.75 16
48 H 0.02 1.38 7.17 -2.38 -0.02 1.36 16
49 H 0.00 0.16 6.94 -2.38 -0.02 0.14 16
50 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16
51 H 0.06 2.23 6.50 -2.38 -0.02 2.21 16
52 H 0.08 2.89 7.00 -2.39 -0.02 2.88 16
Total: -1.00 -78.31 402.01 3.58 -74.73
By element:
Atomic # 1 Polarization: 17.49 SS G_CDS: 0.90 Total: 18.39 kcal
Atomic # 6 Polarization: 6.16 SS G_CDS: 6.85 Total: 13.01 kcal
Atomic # 7 Polarization: -123.66 SS G_CDS: -6.15 Total: -129.81 kcal
Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal
Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal
Total: -78.31 3.58 -74.73 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036777580.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.916 kcal
(2) G-P(sol) polarization free energy of solvation -78.313 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.733 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.183 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds