Wall clock time and date at job start Wed Apr 1 2020 04:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47155 * 2 1 4 4 N 1.46503 * 109.46898 * 120.00082 * 2 1 3 5 5 C 1.34947 * 126.03839 * 275.00075 * 4 2 1 6 6 C 1.35317 * 107.74555 * 180.02562 * 5 4 2 7 7 C 1.39865 * 107.92249 * 359.97438 * 6 5 4 8 8 C 1.50697 * 125.89916 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46992 * 125.00454 * 8 7 6 10 10 O 1.21286 * 120.00183 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00010 * 180.02562 * 9 8 7 12 12 C 1.47216 * 121.35810 * 359.97438 * 11 9 8 13 13 C 1.52751 * 107.75933 * 238.06509 * 12 11 9 14 14 C 1.53156 * 110.84080 * 302.11262 * 13 12 11 15 15 H 1.08997 * 111.79466 * 289.11893 * 14 13 12 16 16 C 1.53933 * 110.88693 * 55.27591 * 14 13 12 17 17 H 1.08998 * 109.50976 * 187.94892 * 16 14 13 18 18 C 1.54201 * 102.21316 * 72.78378 * 16 14 13 19 19 C 1.54758 * 102.14870 * 37.35675 * 18 16 14 20 20 N 1.47218 * 107.22380 * 338.83173 * 19 18 16 21 21 C 1.36935 * 125.89008 * 176.15839 * 20 19 18 22 22 H 1.07998 * 119.99578 * 189.51784 * 21 20 19 23 23 C 1.38808 * 120.00052 * 9.52073 * 21 20 19 24 24 N 1.31622 * 119.99705 * 208.46617 * 23 21 20 25 25 Si 1.86799 * 120.00046 * 28.46192 * 23 21 20 26 26 H 1.48492 * 109.47186 * 275.59681 * 25 23 21 27 27 H 1.48509 * 109.46959 * 155.59649 * 25 23 21 28 28 H 1.48500 * 109.47224 * 35.59999 * 25 23 21 29 29 C 1.46712 * 121.35886 * 179.97438 * 11 9 8 30 30 N 1.30844 * 108.20184 * 0.27238 * 7 6 5 31 31 H 1.08999 * 109.46751 * 299.99754 * 1 2 3 32 32 H 1.08993 * 109.47078 * 59.99983 * 1 2 3 33 33 H 1.08999 * 109.47204 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46930 * 239.99725 * 2 1 3 35 35 H 1.08999 * 109.47090 * 60.00453 * 3 2 1 36 36 H 1.09006 * 109.46833 * 180.02562 * 3 2 1 37 37 H 1.08993 * 109.47141 * 299.99978 * 3 2 1 38 38 H 1.08001 * 126.12203 * 0.03276 * 5 4 2 39 39 H 1.08000 * 126.03583 * 179.97438 * 6 5 4 40 40 H 1.08993 * 109.47250 * 5.00670 * 8 7 6 41 41 H 1.09005 * 109.47264 * 245.00085 * 8 7 6 42 42 H 1.09001 * 109.79862 * 118.50176 * 12 11 9 43 43 H 1.08996 * 109.84728 * 357.66555 * 12 11 9 44 44 H 1.08995 * 109.20518 * 181.75907 * 13 12 11 45 45 H 1.09001 * 109.20111 * 62.45635 * 13 12 11 46 46 H 1.09001 * 110.91343 * 155.75385 * 18 16 14 47 47 H 1.08998 * 110.91263 * 279.37550 * 18 16 14 48 48 H 1.09000 * 110.01263 * 219.36078 * 19 18 16 49 49 H 1.09001 * 109.78592 * 98.16901 * 19 18 16 50 50 H 0.96994 * 120.00227 * 4.41071 * 24 23 21 51 51 H 1.08994 * 109.14497 * 248.26413 * 29 11 9 52 52 H 1.09000 * 109.14241 * 7.40751 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1933 -0.1394 2.4154 6 6 2.6570 -1.1052 3.2421 7 6 2.7687 -2.2873 2.5029 8 6 3.2468 -3.6162 3.0285 9 6 2.2063 -4.6702 2.7502 10 8 1.1779 -4.3717 2.1807 11 7 2.4185 -5.9446 3.1342 12 6 3.6559 -6.3401 3.8268 13 6 4.3277 -7.4304 2.9942 14 6 3.3890 -8.6253 2.8019 15 1 3.2511 -9.1845 3.7273 16 6 2.0516 -8.1787 2.1844 17 1 1.3521 -9.0146 2.1875 18 6 2.4513 -7.8730 0.7268 19 6 3.4894 -8.9828 0.4341 20 7 3.9950 -9.4599 1.7318 21 6 4.8762 -10.4910 1.9200 22 1 5.0670 -10.8633 2.9157 23 6 5.5243 -11.0577 0.8311 24 7 5.9003 -12.3184 0.8720 25 14 5.8627 -10.0311 -0.6924 26 1 4.6637 -10.0353 -1.5685 27 1 7.0167 -10.6053 -1.4299 28 1 6.1768 -8.6366 -0.2899 29 6 1.4257 -6.9942 2.8790 30 7 2.3914 -2.0386 1.2750 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 1.6768 1.9563 -0.8899 38 1 1.9981 0.8885 2.6834 39 1 2.8981 -0.9845 4.2879 40 1 3.4120 -3.5437 4.1034 41 1 4.1800 -3.8877 2.5349 42 1 3.4171 -6.7265 4.8176 43 1 4.3208 -5.4810 3.9160 44 1 5.2325 -7.7634 3.5026 45 1 4.5944 -7.0235 2.0188 46 1 1.5915 -7.9559 0.0620 47 1 2.9090 -6.8869 0.6475 48 1 4.3105 -8.5788 -0.1580 49 1 3.0115 -9.8029 -0.1018 50 1 5.6684 -12.8691 1.6361 51 1 0.9989 -7.3207 3.8273 52 1 0.6318 -6.5902 2.2509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036777582.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:53 Heat of formation + Delta-G solvation = 76.663914 kcal Electronic energy + Delta-G solvation = -31365.243443 eV Core-core repulsion = 27367.439722 eV Total energy + Delta-G solvation = -3997.803721 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.41386 -40.20461 -38.33627 -36.13266 -35.31780 -32.89434 -32.09710 -31.39631 -30.18967 -30.00132 -28.64850 -27.88845 -27.69574 -25.06788 -23.39382 -22.85090 -22.65879 -20.81508 -20.40144 -20.23310 -19.26046 -18.20732 -17.31166 -17.28667 -17.04390 -15.85929 -15.57108 -15.28295 -15.05770 -14.81510 -14.73354 -14.15655 -13.88051 -13.80697 -13.65556 -13.42775 -13.10869 -12.99483 -12.89838 -12.88276 -12.55392 -12.50110 -12.47240 -12.15997 -11.89210 -11.76738 -11.66767 -11.52001 -11.43841 -11.28855 -10.82024 -10.70266 -10.59431 -10.31877 -9.99275 -9.85792 -9.66519 -9.48705 -9.26333 -9.12497 -8.65054 -8.46730 -8.42912 -7.05399 -6.32835 -3.13586 1.83170 2.31611 2.63458 2.78336 3.22752 3.49117 3.56390 3.73804 4.11065 4.44595 4.50482 4.55393 4.64109 4.66560 4.68234 4.86702 4.98735 5.01105 5.04837 5.08648 5.17463 5.23263 5.29737 5.32399 5.36005 5.38900 5.45231 5.46489 5.54824 5.57601 5.67618 5.74361 5.76185 5.79287 5.85469 5.92788 5.97140 6.06828 6.09854 6.18816 6.33872 6.42199 6.53454 6.58542 6.65749 6.80447 6.89527 6.94091 6.97870 7.56872 7.71141 7.71470 8.33903 8.36228 9.04860 9.60983 10.30234 11.16480 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.002553 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.646455 B =10964.100639 C =11540.713262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 C -0.163 4.163 4 N -0.367 5.367 5 C 0.049 3.951 6 C -0.267 4.267 7 C 0.083 3.917 8 C -0.059 4.059 9 C 0.521 3.479 10 O -0.531 6.531 11 N -0.608 5.608 12 C 0.106 3.894 13 C -0.147 4.147 14 C 0.167 3.833 15 H 0.066 0.934 16 C -0.113 4.113 17 H 0.083 0.917 18 C -0.120 4.120 19 C 0.118 3.882 20 N -0.606 5.606 21 C -0.327 4.327 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.915 5.915 25 Si 1.053 2.947 26 H -0.295 1.295 27 H -0.300 1.300 28 H -0.294 1.294 29 C 0.129 3.871 30 N -0.260 5.260 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.168 0.832 39 H 0.145 0.855 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.024 0.976 49 H 0.040 0.960 50 H 0.263 0.737 51 H 0.063 0.937 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.802 27.412 5.109 29.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.053 3.947 3 C -0.221 4.221 4 N -0.150 5.150 5 C -0.096 4.096 6 C -0.297 4.297 7 C -0.084 4.084 8 C -0.100 4.100 9 C 0.308 3.692 10 O -0.407 6.407 11 N -0.342 5.342 12 C -0.017 4.017 13 C -0.188 4.188 14 C 0.059 3.941 15 H 0.084 0.916 16 C -0.133 4.133 17 H 0.101 0.899 18 C -0.158 4.158 19 C -0.007 4.007 20 N -0.332 5.332 21 C -0.454 4.454 22 H 0.095 0.905 23 C -0.215 4.215 24 N -0.555 5.555 25 Si 0.886 3.114 26 H -0.223 1.223 27 H -0.228 1.228 28 H -0.222 1.222 29 C 0.006 3.994 30 N -0.081 5.081 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.185 0.815 39 H 0.163 0.837 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.041 0.959 49 H 0.058 0.942 50 H 0.073 0.927 51 H 0.081 0.919 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.786 27.029 2.008 28.492 hybrid contribution -0.415 0.420 2.294 2.369 sum -9.201 27.449 4.302 29.268 Atomic orbital electron populations 1.22231 0.93622 1.03663 1.02745 1.21234 0.94880 0.92513 0.86105 1.22189 1.02293 0.94105 1.03526 1.48861 1.50402 1.07384 1.08353 1.22344 1.01612 0.99717 0.85962 1.21301 1.14733 0.92420 1.01227 1.21529 1.00078 0.95073 0.91733 1.20049 0.98790 0.88366 1.02815 1.20240 0.87845 0.82571 0.78547 1.90710 1.28156 1.80588 1.41227 1.48088 1.20212 1.07505 1.58382 1.21862 0.85251 0.98732 0.95892 1.22538 0.99949 0.96030 1.00244 1.21222 0.89912 0.90117 0.92809 0.91566 1.21876 0.98367 0.97050 0.95969 0.89860 1.22465 0.98682 0.98861 0.95755 1.21693 0.94487 0.94802 0.89684 1.45328 1.51391 1.36901 0.99550 1.20004 1.21325 1.08061 0.95962 0.90491 1.25703 0.97766 0.97260 1.00761 1.70897 1.49543 1.04211 1.30886 0.83982 0.75921 0.74901 0.76578 1.22252 1.22843 1.22169 1.20878 0.91203 0.87167 1.00113 1.77467 1.18696 0.92099 1.19847 0.92052 0.90606 0.91286 0.88016 0.91608 0.91487 0.90018 0.81471 0.83709 0.87147 0.87316 0.91132 0.90268 0.90962 0.91680 0.91613 0.91817 0.95864 0.94175 0.92678 0.91893 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.52 37.16 0.35 -0.87 16 2 C 0.15 1.27 3.93 -67.93 -0.27 1.00 16 3 C -0.16 -0.82 8.83 37.16 0.33 -0.49 16 4 N -0.37 -4.21 3.53 -54.86 -0.19 -4.41 16 5 C 0.05 0.47 10.59 -17.22 -0.18 0.29 16 6 C -0.27 -2.87 10.72 -40.01 -0.43 -3.30 16 7 C 0.08 1.11 6.01 -82.41 -0.50 0.61 16 8 C -0.06 -0.68 4.65 -29.04 -0.14 -0.81 16 9 C 0.52 7.70 7.71 -10.99 -0.08 7.61 16 10 O -0.53 -9.82 15.04 5.55 0.08 -9.73 16 11 N -0.61 -8.37 2.80 -174.34 -0.49 -8.86 16 12 C 0.11 1.28 6.36 -3.78 -0.02 1.25 16 13 C -0.15 -2.41 5.22 -26.78 -0.14 -2.55 16 14 C 0.17 3.13 3.62 -66.19 -0.24 2.89 16 15 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 16 C -0.11 -1.86 2.89 -90.56 -0.26 -2.12 16 17 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 18 C -0.12 -2.18 5.89 -25.18 -0.15 -2.33 16 19 C 0.12 2.66 4.58 -2.72 -0.01 2.65 16 20 N -0.61 -14.52 2.77 -161.75 -0.45 -14.97 16 21 C -0.33 -9.16 10.44 -15.06 -0.16 -9.32 16 22 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 23 C -0.01 -0.41 5.42 -17.43 -0.09 -0.51 16 24 N -0.92 -28.63 13.70 55.49 0.76 -27.87 16 25 Si 1.05 27.26 24.67 -169.99 -4.19 23.06 16 26 H -0.29 -7.31 6.65 56.52 0.38 -6.94 16 27 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 28 H -0.29 -7.33 6.79 56.52 0.38 -6.95 16 29 C 0.13 1.85 5.83 -4.98 -0.03 1.82 16 30 N -0.26 -3.93 11.94 33.67 0.40 -3.53 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.27 7.16 -51.93 -0.37 -0.10 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.17 0.98 7.26 -52.49 -0.38 0.60 16 39 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.11 0.91 7.88 -51.93 -0.41 0.51 16 41 H 0.11 1.17 7.81 -51.93 -0.41 0.76 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.75 6.05 -51.93 -0.31 0.44 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 1.20 6.91 -51.93 -0.36 0.84 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.06 1.18 7.41 -51.93 -0.38 0.79 16 48 H 0.02 0.57 4.16 -51.93 -0.22 0.35 16 49 H 0.04 0.96 7.67 -51.93 -0.40 0.56 16 50 H 0.26 8.12 8.73 -40.82 -0.36 7.76 16 51 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.09 1.35 7.04 -51.93 -0.37 0.98 16 LS Contribution 399.12 15.07 6.01 6.01 Total: -1.00 -36.49 399.12 -8.80 -45.29 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -8.72 Total: -0.83 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.02 Total: -4.17 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.03 Total: -59.64 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -4.19 Total: 23.06 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.49 -8.80 -45.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036777582.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.957 kcal (2) G-P(sol) polarization free energy of solvation -36.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds