Wall clock time and date at job start Wed Apr 1 2020 04:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47155 * 2 1 4 4 N 1.46503 * 109.46898 * 120.00082 * 2 1 3 5 5 C 1.34947 * 126.03839 * 275.00075 * 4 2 1 6 6 C 1.35317 * 107.74555 * 180.02562 * 5 4 2 7 7 C 1.39865 * 107.92249 * 359.97438 * 6 5 4 8 8 C 1.50697 * 125.89916 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46992 * 125.00454 * 8 7 6 10 10 O 1.21286 * 120.00183 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00010 * 180.02562 * 9 8 7 12 12 C 1.47216 * 121.35810 * 359.97438 * 11 9 8 13 13 C 1.52751 * 107.75933 * 238.06509 * 12 11 9 14 14 C 1.53156 * 110.84080 * 302.11262 * 13 12 11 15 15 H 1.08997 * 111.79466 * 289.11893 * 14 13 12 16 16 C 1.53933 * 110.88693 * 55.27591 * 14 13 12 17 17 H 1.08998 * 109.50976 * 187.94892 * 16 14 13 18 18 C 1.54201 * 102.21316 * 72.78378 * 16 14 13 19 19 C 1.54758 * 102.14870 * 37.35675 * 18 16 14 20 20 N 1.47218 * 107.22380 * 338.83173 * 19 18 16 21 21 C 1.36935 * 125.89008 * 176.15839 * 20 19 18 22 22 H 1.07998 * 119.99578 * 189.51784 * 21 20 19 23 23 C 1.38808 * 120.00052 * 9.52073 * 21 20 19 24 24 N 1.31622 * 119.99705 * 208.46617 * 23 21 20 25 25 Si 1.86799 * 120.00046 * 28.46192 * 23 21 20 26 26 H 1.48492 * 109.47186 * 275.59681 * 25 23 21 27 27 H 1.48509 * 109.46959 * 155.59649 * 25 23 21 28 28 H 1.48500 * 109.47224 * 35.59999 * 25 23 21 29 29 C 1.46712 * 121.35886 * 179.97438 * 11 9 8 30 30 N 1.30844 * 108.20184 * 0.27238 * 7 6 5 31 31 H 1.08999 * 109.46751 * 299.99754 * 1 2 3 32 32 H 1.08993 * 109.47078 * 59.99983 * 1 2 3 33 33 H 1.08999 * 109.47204 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46930 * 239.99725 * 2 1 3 35 35 H 1.08999 * 109.47090 * 60.00453 * 3 2 1 36 36 H 1.09006 * 109.46833 * 180.02562 * 3 2 1 37 37 H 1.08993 * 109.47141 * 299.99978 * 3 2 1 38 38 H 1.08001 * 126.12203 * 0.03276 * 5 4 2 39 39 H 1.08000 * 126.03583 * 179.97438 * 6 5 4 40 40 H 1.08993 * 109.47250 * 5.00670 * 8 7 6 41 41 H 1.09005 * 109.47264 * 245.00085 * 8 7 6 42 42 H 1.09001 * 109.79862 * 118.50176 * 12 11 9 43 43 H 1.08996 * 109.84728 * 357.66555 * 12 11 9 44 44 H 1.08995 * 109.20518 * 181.75907 * 13 12 11 45 45 H 1.09001 * 109.20111 * 62.45635 * 13 12 11 46 46 H 1.09001 * 110.91343 * 155.75385 * 18 16 14 47 47 H 1.08998 * 110.91263 * 279.37550 * 18 16 14 48 48 H 1.09000 * 110.01263 * 219.36078 * 19 18 16 49 49 H 1.09001 * 109.78592 * 98.16901 * 19 18 16 50 50 H 0.96994 * 120.00227 * 4.41071 * 24 23 21 51 51 H 1.08994 * 109.14497 * 248.26413 * 29 11 9 52 52 H 1.09000 * 109.14241 * 7.40751 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1933 -0.1394 2.4154 6 6 2.6570 -1.1052 3.2421 7 6 2.7687 -2.2873 2.5029 8 6 3.2468 -3.6162 3.0285 9 6 2.2063 -4.6702 2.7502 10 8 1.1779 -4.3717 2.1807 11 7 2.4185 -5.9446 3.1342 12 6 3.6559 -6.3401 3.8268 13 6 4.3277 -7.4304 2.9942 14 6 3.3890 -8.6253 2.8019 15 1 3.2511 -9.1845 3.7273 16 6 2.0516 -8.1787 2.1844 17 1 1.3521 -9.0146 2.1875 18 6 2.4513 -7.8730 0.7268 19 6 3.4894 -8.9828 0.4341 20 7 3.9950 -9.4599 1.7318 21 6 4.8762 -10.4910 1.9200 22 1 5.0670 -10.8633 2.9157 23 6 5.5243 -11.0577 0.8311 24 7 5.9003 -12.3184 0.8720 25 14 5.8627 -10.0311 -0.6924 26 1 4.6637 -10.0353 -1.5685 27 1 7.0167 -10.6053 -1.4299 28 1 6.1768 -8.6366 -0.2899 29 6 1.4257 -6.9942 2.8790 30 7 2.3914 -2.0386 1.2750 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 1.6768 1.9563 -0.8899 38 1 1.9981 0.8885 2.6834 39 1 2.8981 -0.9845 4.2879 40 1 3.4120 -3.5437 4.1034 41 1 4.1800 -3.8877 2.5349 42 1 3.4171 -6.7265 4.8176 43 1 4.3208 -5.4810 3.9160 44 1 5.2325 -7.7634 3.5026 45 1 4.5944 -7.0235 2.0188 46 1 1.5915 -7.9559 0.0620 47 1 2.9090 -6.8869 0.6475 48 1 4.3105 -8.5788 -0.1580 49 1 3.0115 -9.8029 -0.1018 50 1 5.6684 -12.8691 1.6361 51 1 0.9989 -7.3207 3.8273 52 1 0.6318 -6.5902 2.2509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036777582.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:52 Heat of formation + Delta-G solvation = 52.690842 kcal Electronic energy + Delta-G solvation = -31366.282994 eV Core-core repulsion = 27367.439722 eV Total energy + Delta-G solvation = -3998.843272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.21835 -41.44494 -39.71592 -36.88770 -36.63760 -34.72591 -33.28799 -32.66705 -31.67751 -30.84208 -30.11743 -28.88958 -28.20337 -26.56666 -24.94970 -24.01813 -23.65572 -22.32475 -21.73762 -20.96453 -20.32473 -19.69949 -19.14567 -18.19867 -17.94934 -17.09084 -16.80846 -16.71299 -16.27393 -16.02722 -15.69069 -15.43667 -15.10308 -14.85760 -14.70919 -14.64573 -14.44379 -14.21149 -14.08516 -13.77071 -13.65776 -13.48125 -13.31500 -13.10092 -13.06993 -12.96737 -12.89763 -12.82987 -12.50265 -12.32361 -12.30104 -12.09444 -12.06399 -11.71129 -11.44999 -11.40913 -11.27120 -11.08004 -10.77244 -10.61457 -10.13848 -9.62236 -9.41284 -9.10222 -8.63950 -5.36343 1.05808 1.38512 1.45971 1.63573 1.65684 1.69191 1.79102 2.21922 2.51922 2.98944 3.27354 3.47431 3.58493 3.71794 3.77342 3.87218 3.90424 3.93528 4.02679 4.09001 4.09376 4.23478 4.28258 4.36785 4.47994 4.51098 4.51687 4.58338 4.61111 4.62803 4.75736 4.76703 4.78251 4.83398 4.84825 4.86969 4.87967 4.91300 4.94486 5.03849 5.14553 5.17459 5.19449 5.23289 5.31927 5.50902 5.60787 5.64902 5.77024 6.12845 6.28121 6.49165 6.82442 6.90068 7.24932 7.49296 8.17337 8.87266 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.002553 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.646455 B =10964.100639 C =11540.713262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 C -0.153 4.153 4 N -0.373 5.373 5 C 0.054 3.946 6 C -0.280 4.280 7 C 0.064 3.936 8 C -0.055 4.055 9 C 0.519 3.481 10 O -0.573 6.573 11 N -0.607 5.607 12 C 0.115 3.885 13 C -0.139 4.139 14 C 0.160 3.840 15 H 0.068 0.932 16 C -0.099 4.099 17 H 0.084 0.916 18 C -0.108 4.108 19 C 0.113 3.887 20 N -0.625 5.625 21 C -0.305 4.305 22 H 0.055 0.945 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 1.092 2.908 26 H -0.282 1.282 27 H -0.307 1.307 28 H -0.282 1.282 29 C 0.135 3.865 30 N -0.321 5.321 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.207 0.793 39 H 0.171 0.829 40 H 0.149 0.851 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.065 0.935 45 H 0.043 0.957 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.014 0.986 49 H 0.022 0.978 50 H 0.252 0.748 51 H 0.088 0.912 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.607 31.338 6.622 33.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 C -0.211 4.211 4 N -0.156 5.156 5 C -0.091 4.091 6 C -0.309 4.309 7 C -0.102 4.102 8 C -0.096 4.096 9 C 0.308 3.692 10 O -0.452 6.452 11 N -0.340 5.340 12 C -0.008 4.008 13 C -0.179 4.179 14 C 0.054 3.946 15 H 0.086 0.914 16 C -0.119 4.119 17 H 0.102 0.898 18 C -0.146 4.146 19 C -0.012 4.012 20 N -0.351 5.351 21 C -0.434 4.434 22 H 0.073 0.927 23 C -0.265 4.265 24 N -0.597 5.597 25 Si 0.922 3.078 26 H -0.210 1.210 27 H -0.235 1.235 28 H -0.209 1.209 29 C 0.012 3.988 30 N -0.143 5.143 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.053 0.947 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.223 0.777 39 H 0.188 0.812 40 H 0.167 0.833 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.031 0.969 49 H 0.040 0.960 50 H 0.061 0.939 51 H 0.107 0.893 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.605 30.993 3.551 32.641 hybrid contribution -0.236 -0.779 1.879 2.048 sum -9.842 30.214 5.430 32.237 Atomic orbital electron populations 1.22180 0.93156 1.01818 1.04358 1.21515 0.95273 0.94025 0.84850 1.22151 1.01820 0.91807 1.05296 1.49139 1.50122 1.06578 1.09759 1.23013 0.99907 1.01225 0.84997 1.21690 1.14993 0.91703 1.02548 1.21936 1.00091 0.96410 0.91769 1.20174 0.97591 0.86690 1.05177 1.20809 0.87852 0.83128 0.77442 1.90697 1.30176 1.81304 1.43066 1.48162 1.20455 1.07211 1.58163 1.21947 0.84699 0.98519 0.95596 1.22328 0.99352 0.96205 1.00006 1.21508 0.91153 0.90398 0.91525 0.91433 1.21792 0.97200 0.98216 0.94707 0.89815 1.22389 0.97884 0.96992 0.97368 1.21738 0.95068 0.95460 0.88896 1.45439 1.50715 1.37140 1.01822 1.19927 1.20503 1.08238 0.94704 0.92665 1.26639 0.98807 0.97525 1.03563 1.70978 1.52361 1.05325 1.31060 0.83420 0.75904 0.74134 0.74326 1.20951 1.23533 1.20853 1.20783 0.90921 0.86222 1.00876 1.77364 1.20932 0.94525 1.21523 0.91272 0.88117 0.94747 0.89583 0.90044 0.92102 0.88013 0.77659 0.81157 0.83337 0.86571 0.88515 0.86852 0.91626 0.93832 0.89997 0.91930 0.96896 0.95989 0.93921 0.89344 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.52 71.98 0.69 -1.50 16 2 C 0.14 2.23 3.93 44.99 0.18 2.41 16 3 C -0.15 -1.14 8.83 71.98 0.64 -0.50 16 4 N -0.37 -8.17 3.53 -327.48 -1.15 -9.32 16 5 C 0.05 0.91 10.59 83.54 0.88 1.79 16 6 C -0.28 -5.27 10.72 21.99 0.24 -5.04 16 7 C 0.06 1.61 6.01 43.10 0.26 1.87 16 8 C -0.06 -1.13 4.65 29.10 0.14 -0.99 16 9 C 0.52 14.24 7.71 87.66 0.68 14.92 16 10 O -0.57 -20.83 15.04 -3.05 -0.05 -20.88 16 11 N -0.61 -14.95 2.80 -823.89 -2.31 -17.26 16 12 C 0.11 2.33 6.36 86.16 0.55 2.88 16 13 C -0.14 -4.26 5.22 30.56 0.16 -4.10 16 14 C 0.16 5.79 3.62 44.95 0.16 5.95 16 15 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 16 C -0.10 -3.11 2.89 -10.75 -0.03 -3.14 16 17 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 18 C -0.11 -3.84 5.89 31.60 0.19 -3.65 16 19 C 0.11 5.08 4.58 86.84 0.40 5.48 16 20 N -0.63 -29.96 2.77 -665.67 -1.85 -31.81 16 21 C -0.31 -17.46 10.44 84.03 0.88 -16.58 16 22 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 23 C -0.07 -4.25 5.42 84.86 0.46 -3.79 16 24 N -0.95 -61.65 13.70 21.65 0.30 -61.36 16 25 Si 1.09 56.35 24.67 68.60 1.69 58.04 16 26 H -0.28 -13.83 6.65 99.48 0.66 -13.17 16 27 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 28 H -0.28 -13.75 6.79 99.48 0.68 -13.07 16 29 C 0.14 3.54 5.83 85.66 0.50 4.04 16 30 N -0.32 -9.64 11.94 -47.39 -0.57 -10.20 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 0.36 7.16 -2.39 -0.02 0.35 16 36 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.21 1.56 7.26 -2.91 -0.02 1.54 16 39 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.15 1.78 7.88 -2.39 -0.02 1.76 16 41 H 0.12 2.18 7.81 -2.38 -0.02 2.16 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.11 1.61 6.05 -2.39 -0.01 1.59 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.04 1.53 6.91 -2.39 -0.02 1.52 16 46 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 47 H 0.06 2.25 7.41 -2.39 -0.02 2.23 16 48 H 0.01 0.64 4.16 -2.39 -0.01 0.63 16 49 H 0.02 1.06 7.67 -2.39 -0.02 1.04 16 50 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16 51 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.08 2.26 7.04 -2.39 -0.02 2.25 16 Total: -1.00 -84.30 399.12 3.80 -80.50 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.78 Total: 12.25 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 6.95 Total: 0.04 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -5.58 Total: -129.95 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 56.35 SS G_CDS: 1.69 Total: 58.04 kcal Total: -84.30 3.80 -80.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036777582.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.187 kcal (2) G-P(sol) polarization free energy of solvation -84.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds