Wall clock time and date at job start Wed Apr 1 2020 04:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47282 * 2 1 4 4 N 1.46496 * 109.47215 * 180.02562 * 3 2 1 5 5 C 1.34256 * 125.75492 * 124.71280 * 4 3 2 6 6 C 1.38050 * 107.41259 * 179.90295 * 5 4 3 7 7 C 1.47434 * 126.41133 * 180.10482 * 6 5 4 8 8 O 1.21604 * 120.00105 * 129.27131 * 7 6 5 9 9 N 1.34770 * 119.99832 * 309.27710 * 7 6 5 10 10 C 1.46604 * 119.68615 * 183.95868 * 9 7 6 11 11 C 1.55570 * 110.27589 * 131.85354 * 10 9 7 12 12 C 1.51521 * 106.65268 * 51.70097 * 11 10 9 13 13 H 1.08996 * 109.28410 * 53.09711 * 12 11 10 14 14 C 1.55366 * 107.78114 * 294.53850 * 12 11 10 15 15 H 1.09000 * 111.50932 * 310.16841 * 14 12 11 16 16 C 1.53745 * 100.22008 * 191.48813 * 14 12 11 17 17 C 1.55288 * 101.83979 * 39.09537 * 16 14 12 18 18 N 1.45461 * 116.86688 * 177.80059 * 12 11 10 19 19 C 1.36941 * 126.40780 * 329.06414 * 18 12 11 20 20 H 1.08001 * 119.99482 * 0.02562 * 19 18 12 21 21 C 1.38805 * 120.00431 * 180.02562 * 19 18 12 22 22 N 1.31625 * 119.99736 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00211 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47288 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46993 * 119.99943 * 23 21 19 26 26 H 1.48500 * 109.47230 * 239.99706 * 23 21 19 27 27 C 1.47720 * 119.69106 * 4.23297 * 9 7 6 28 28 C 1.41287 * 107.17234 * 0.35255 * 6 5 4 29 29 C 1.50697 * 125.98794 * 179.79693 * 28 6 5 30 30 N 1.30449 * 108.02333 * 359.78462 * 28 6 5 31 31 H 1.08996 * 109.47160 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47512 * 300.00744 * 1 2 3 33 33 H 1.08999 * 109.46892 * 59.99951 * 1 2 3 34 34 H 1.08999 * 109.47160 * 239.99665 * 2 1 3 35 35 H 1.09004 * 109.46815 * 119.99313 * 2 1 3 36 36 H 1.08996 * 109.47004 * 59.99040 * 3 2 1 37 37 H 1.08999 * 109.46673 * 299.99908 * 3 2 1 38 38 H 1.08000 * 126.29364 * 0.02562 * 5 4 3 39 39 H 1.09000 * 109.25521 * 252.47949 * 10 9 7 40 40 H 1.08998 * 109.25353 * 11.91041 * 10 9 7 41 41 H 1.08994 * 110.73260 * 292.17593 * 11 10 9 42 42 H 1.09001 * 109.77491 * 170.69049 * 11 10 9 43 43 H 1.08995 * 110.95144 * 157.23441 * 16 14 12 44 44 H 1.08997 * 110.94970 * 280.95863 * 16 14 12 45 45 H 1.08996 * 109.91866 * 218.17136 * 17 16 14 46 46 H 1.09000 * 110.08418 * 96.95707 * 17 16 14 47 47 H 0.96996 * 119.99694 * 179.97438 * 22 21 19 48 48 H 1.09004 * 110.06926 * 351.24954 * 27 9 7 49 49 H 1.08995 * 110.07307 * 112.82826 * 27 9 7 50 50 H 1.09002 * 109.47738 * 270.00842 * 29 28 6 51 51 H 1.09005 * 109.47114 * 30.00740 * 29 28 6 52 52 H 1.09000 * 109.47298 * 150.00574 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2891 2.0631 -0.8965 6 6 5.5996 1.8175 -0.5387 7 6 6.8034 2.3045 -1.2368 8 8 7.6834 2.8653 -0.6124 9 7 6.9285 2.1283 -2.5671 10 6 8.1651 2.5366 -3.2405 11 6 8.6747 1.3972 -4.1691 12 6 7.5064 0.9974 -5.0472 13 1 7.1043 1.8842 -5.5371 14 6 6.4138 0.3802 -4.1311 15 1 6.8289 -0.3823 -3.4720 16 6 5.4778 -0.2230 -5.1913 17 6 6.4893 -0.7770 -6.2311 18 7 7.7558 -0.0311 -6.0451 19 6 8.9397 -0.2657 -6.6921 20 1 9.8037 0.3451 -6.4755 21 6 9.0294 -1.2885 -7.6263 22 7 7.9765 -2.0332 -7.8898 23 14 10.6441 -1.6080 -8.5093 24 1 11.6662 -0.6393 -8.0380 25 1 11.1013 -2.9909 -8.2199 26 1 10.4483 -1.4474 -9.9726 27 6 5.8160 1.5312 -3.3339 28 6 5.5713 1.0072 0.6184 29 6 6.7726 0.4848 1.3633 30 7 4.3230 0.7907 0.9291 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 1.9563 -0.8900 38 1 3.9559 2.6486 -1.7406 39 1 7.9740 3.4332 -3.8302 40 1 8.9267 2.7550 -2.4919 41 1 9.0075 0.5411 -3.5824 42 1 9.4943 1.7640 -4.7871 43 1 4.8751 -1.0261 -4.7674 44 1 4.8445 0.5455 -5.6346 45 1 6.1093 -0.6178 -7.2402 46 1 6.6564 -1.8406 -6.0609 47 1 8.0391 -2.7476 -8.5429 48 1 5.0510 1.1572 -2.6533 49 1 5.3876 2.2715 -4.0095 50 1 7.0620 -0.4829 0.9534 51 1 7.5998 1.1866 1.2565 52 1 6.5252 0.3729 2.4190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036852563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:55 Heat of formation + Delta-G solvation = 46.434597 kcal Electronic energy + Delta-G solvation = -31658.442381 eV Core-core repulsion = 27659.327819 eV Total energy + Delta-G solvation = -3999.114563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.54255 -41.07179 -39.50079 -36.68245 -36.39575 -34.38227 -33.56277 -33.42586 -31.61509 -30.83232 -29.77237 -29.46781 -27.04530 -26.41687 -25.08453 -23.95916 -22.87373 -22.54225 -21.93165 -21.22642 -20.98149 -19.87975 -18.57421 -18.13314 -17.48988 -16.87986 -16.78466 -16.53042 -16.18683 -15.99516 -15.67476 -15.55397 -15.19551 -14.88751 -14.66087 -14.42019 -14.34871 -14.11541 -13.90944 -13.67864 -13.59093 -13.36049 -13.10825 -13.07401 -13.03664 -12.99971 -12.79836 -12.71321 -12.41988 -12.23800 -12.10021 -11.97183 -11.90319 -11.72536 -11.59170 -11.56416 -11.44718 -11.07922 -10.82209 -10.70315 -10.26545 -9.72767 -9.47666 -8.84189 -7.82756 -5.15985 0.66150 1.19998 1.43444 1.45510 1.46089 1.55823 1.85872 2.24556 2.50960 3.32218 3.36181 3.48545 3.71049 3.75136 3.85757 3.94023 3.95366 4.03533 4.13179 4.21680 4.23676 4.30714 4.33198 4.43177 4.52560 4.54153 4.57530 4.58457 4.65085 4.69964 4.71361 4.81324 4.83006 4.90275 4.92653 4.93489 4.98447 5.09087 5.14609 5.18084 5.21371 5.22462 5.40171 5.49650 5.51609 5.58565 5.61064 5.70466 5.81336 5.96887 6.23590 6.40778 6.62144 7.12295 7.20857 7.82372 8.49700 9.28894 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.002923 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.771523 B = 9575.905009 C =10875.128330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.122 3.878 4 N -0.353 5.353 5 C 0.113 3.887 6 C -0.309 4.309 7 C 0.596 3.404 8 O -0.582 6.582 9 N -0.601 5.601 10 C 0.128 3.872 11 C -0.120 4.120 12 C 0.156 3.844 13 H 0.029 0.971 14 C -0.109 4.109 15 H 0.057 0.943 16 C -0.115 4.115 17 C 0.179 3.821 18 N -0.617 5.617 19 C -0.227 4.227 20 H 0.082 0.918 21 C -0.069 4.069 22 N -0.952 5.952 23 Si 0.970 3.030 24 H -0.266 1.266 25 H -0.296 1.296 26 H -0.293 1.293 27 C 0.126 3.874 28 C 0.106 3.894 29 C -0.078 4.078 30 N -0.318 5.318 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.222 0.778 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.046 0.954 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.004 0.996 46 H 0.013 0.987 47 H 0.244 0.756 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.081 0.919 51 H 0.074 0.926 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.637 9.373 15.892 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.003 3.997 4 N -0.131 5.131 5 C -0.039 4.039 6 C -0.324 4.324 7 C 0.386 3.614 8 O -0.462 6.462 9 N -0.333 5.333 10 C 0.005 3.995 11 C -0.159 4.159 12 C 0.049 3.951 13 H 0.047 0.953 14 C -0.129 4.129 15 H 0.075 0.925 16 C -0.154 4.154 17 C 0.055 3.945 18 N -0.342 5.342 19 C -0.356 4.356 20 H 0.100 0.900 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.800 3.200 24 H -0.191 1.191 25 H -0.224 1.224 26 H -0.220 1.220 27 C 0.005 3.995 28 C -0.061 4.061 29 C -0.136 4.136 30 N -0.141 5.141 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.153 0.847 38 H 0.238 0.762 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.023 0.977 46 H 0.032 0.968 47 H 0.053 0.947 48 H 0.124 0.876 49 H 0.117 0.883 50 H 0.100 0.900 51 H 0.093 0.907 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.050 8.985 16.869 25.612 hybrid contribution 1.830 -0.503 -1.505 2.422 sum -15.220 8.481 15.363 23.230 Atomic orbital electron populations 1.21678 0.92739 1.02780 1.03126 1.21740 0.97722 0.95097 1.02533 1.22333 0.71261 0.99617 1.06444 1.48762 1.07853 1.36883 1.19571 1.23524 0.88867 0.96224 0.95245 1.20091 0.93413 1.15319 1.03548 1.17640 0.85401 0.77293 0.81109 1.90711 1.44076 1.44612 1.66847 1.48201 1.17025 1.61155 1.06887 1.21780 0.86169 0.96147 0.95449 1.22067 0.98646 0.97896 0.97276 1.20928 0.94458 0.91238 0.88450 0.95314 1.22469 0.97370 0.97229 0.95878 0.92473 1.22544 0.96661 1.00747 0.95423 1.21334 0.84399 0.94079 0.94735 1.44527 1.08225 1.36426 1.44996 1.19399 0.88848 1.12050 1.15290 0.90003 1.25559 1.00502 0.98843 1.01255 1.70161 1.29416 1.23004 1.37576 0.85116 0.79735 0.77301 0.77896 1.19073 1.22353 1.22030 1.21987 0.88397 0.94296 0.94868 1.22545 0.93982 0.95665 0.93873 1.20271 0.92086 1.01351 0.99929 1.77056 1.01062 1.21049 1.14913 0.92258 0.91659 0.90909 0.92061 0.92515 0.88439 0.84709 0.76171 0.89870 0.90030 0.93473 0.91409 0.90289 0.89439 0.97737 0.96831 0.94651 0.87644 0.88271 0.90045 0.90749 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 71.98 0.71 -0.25 16 2 C -0.13 -1.43 6.11 30.60 0.19 -1.24 16 3 C 0.12 1.10 6.49 86.38 0.56 1.66 16 4 N -0.35 -6.08 3.65 -346.30 -1.26 -7.35 16 5 C 0.11 1.90 9.05 84.28 0.76 2.67 16 6 C -0.31 -7.65 5.09 -20.15 -0.10 -7.75 16 7 C 0.60 17.45 7.31 86.67 0.63 18.08 16 8 O -0.58 -20.93 15.63 -4.04 -0.06 -21.00 16 9 N -0.60 -16.15 2.99 -818.63 -2.45 -18.60 16 10 C 0.13 3.66 6.36 87.25 0.56 4.21 16 11 C -0.12 -4.19 5.55 31.00 0.17 -4.02 16 12 C 0.16 5.94 2.56 45.52 0.12 6.06 16 13 H 0.03 1.09 7.92 -2.39 -0.02 1.07 16 14 C -0.11 -3.44 2.86 -9.98 -0.03 -3.47 16 15 H 0.06 2.09 8.11 -2.39 -0.02 2.07 16 16 C -0.12 -3.74 6.54 31.63 0.21 -3.53 16 17 C 0.18 8.55 5.46 86.85 0.47 9.02 16 18 N -0.62 -30.70 3.35 -669.93 -2.24 -32.94 16 19 C -0.23 -12.49 9.86 84.03 0.83 -11.66 16 20 H 0.08 4.34 7.18 -2.91 -0.02 4.32 16 21 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 22 N -0.95 -57.25 10.43 21.65 0.23 -57.02 16 23 Si 0.97 46.14 29.55 68.60 2.03 48.16 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 C 0.13 2.84 5.34 85.90 0.46 3.30 16 28 C 0.11 2.75 7.26 43.51 0.32 3.06 16 29 C -0.08 -1.83 10.28 71.24 0.73 -1.10 16 30 N -0.32 -7.69 12.33 -46.68 -0.58 -8.26 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.14 0.28 8.06 -2.39 -0.02 0.26 16 38 H 0.22 1.78 7.65 -2.91 -0.02 1.76 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.08 2.48 6.98 -2.39 -0.02 2.46 16 41 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 42 H 0.07 2.44 7.59 -2.39 -0.02 2.42 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.09 2.37 8.11 -2.39 -0.02 2.35 16 45 H 0.00 0.23 7.77 -2.39 -0.02 0.22 16 46 H 0.01 0.74 7.20 -2.39 -0.02 0.72 16 47 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 48 H 0.11 1.98 4.66 -2.39 -0.01 1.97 16 49 H 0.10 1.76 8.08 -2.39 -0.02 1.74 16 50 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.07 1.95 7.24 -2.38 -0.02 1.93 16 52 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -77.04 405.14 3.61 -73.43 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.90 Total: 11.99 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 7.05 Total: 11.59 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -6.31 Total: -124.18 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.06 Total: -21.00 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -77.04 3.61 -73.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036852563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.867 kcal (2) G-P(sol) polarization free energy of solvation -77.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds