Wall clock time and date at job start Wed Apr 1 2020 04:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46596 * 2 1 4 4 N 1.46503 * 109.46796 * 180.02562 * 3 2 1 5 5 N 1.39933 * 125.75739 * 90.02125 * 4 3 2 6 6 C 1.30446 * 108.90027 * 180.02562 * 5 4 3 7 7 C 1.41289 * 108.02002 * 0.02562 * 6 5 4 8 8 C 1.47435 * 126.40955 * 179.97438 * 7 6 5 9 9 O 1.21607 * 119.99890 * 140.73156 * 8 7 6 10 10 N 1.34774 * 120.00227 * 320.72127 * 8 7 6 11 11 C 1.46597 * 119.68065 * 354.65675 * 10 8 7 12 12 C 1.53961 * 110.57306 * 227.79719 * 11 10 8 13 13 C 1.51802 * 107.28138 * 308.73326 * 12 11 10 14 14 H 1.09004 * 109.29219 * 306.56103 * 13 12 11 15 15 C 1.55674 * 107.48960 * 65.11618 * 13 12 11 16 16 H 1.08998 * 112.48575 * 50.68481 * 15 13 12 17 17 C 1.53743 * 100.09793 * 168.92569 * 15 13 12 18 18 C 1.55284 * 101.84606 * 320.74001 * 17 15 13 19 19 N 1.45461 * 117.16864 * 181.63751 * 13 12 11 20 20 C 1.36939 * 126.40966 * 31.13189 * 19 13 12 21 21 H 1.08003 * 119.99718 * 359.72314 * 20 19 13 22 22 C 1.38811 * 120.00210 * 179.71426 * 20 19 13 23 23 N 1.31617 * 119.99998 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99924 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46942 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47023 * 120.00346 * 24 22 20 27 27 H 1.48495 * 109.46985 * 240.00502 * 24 22 20 28 28 C 1.47710 * 119.68314 * 174.62669 * 10 8 7 29 29 C 1.34264 * 125.75587 * 270.31647 * 4 3 2 30 30 C 1.50705 * 126.28965 * 359.97438 * 29 4 3 31 31 H 1.08995 * 109.47150 * 59.99985 * 1 2 3 32 32 H 1.08999 * 109.46852 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46921 * 300.00135 * 1 2 3 34 34 H 1.08999 * 109.47144 * 240.00251 * 2 1 3 35 35 H 1.08993 * 109.47297 * 119.99488 * 2 1 3 36 36 H 1.08991 * 109.47457 * 60.00444 * 3 2 1 37 37 H 1.08997 * 109.47479 * 299.99343 * 3 2 1 38 38 H 1.08003 * 125.98797 * 179.97438 * 6 5 4 39 39 H 1.09003 * 109.25716 * 348.07985 * 11 10 8 40 40 H 1.08998 * 109.26246 * 107.55097 * 11 10 8 41 41 H 1.09005 * 109.87529 * 68.40515 * 12 11 10 42 42 H 1.08998 * 109.88355 * 189.41061 * 12 11 10 43 43 H 1.09010 * 110.95327 * 202.60217 * 17 15 13 44 44 H 1.08998 * 110.95700 * 78.87909 * 17 15 13 45 45 H 1.09001 * 109.91998 * 263.13762 * 18 17 15 46 46 H 1.08999 * 109.92489 * 141.82548 * 18 17 15 47 47 H 0.96999 * 120.00093 * 179.97438 * 23 22 20 48 48 H 1.08996 * 110.06913 * 8.75869 * 28 10 8 49 49 H 1.08999 * 110.07111 * 247.18297 * 28 10 8 50 50 H 1.09002 * 109.46630 * 270.20792 * 30 29 4 51 51 H 1.08999 * 109.46896 * 30.20080 * 30 29 4 52 52 H 1.08997 * 109.47559 * 150.20909 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 7 4.3222 1.4432 -1.1365 6 6 5.5707 1.4425 -0.7588 7 6 5.6000 1.4408 0.6538 8 6 6.8044 1.4390 1.5042 9 8 6.8313 2.1044 2.5217 10 7 7.8756 0.6998 1.1539 11 6 7.7948 -0.1900 -0.0084 12 6 8.3406 -1.5866 0.3406 13 6 9.7093 -1.3922 0.9677 14 1 10.3278 -0.7895 0.3027 15 6 9.5048 -0.6321 2.3109 16 1 8.7459 -1.0960 2.9409 17 6 10.9072 -0.7832 2.9224 18 6 11.2737 -2.2386 2.5237 19 7 10.4412 -2.5899 1.3495 20 6 10.3772 -3.8120 0.7351 21 1 9.7315 -3.9538 -0.1190 22 6 11.1422 -4.8685 1.2098 23 7 11.9288 -4.6957 2.2508 24 14 11.0553 -6.5354 0.3711 25 1 10.1042 -6.4678 -0.7672 26 1 12.4023 -6.9075 -0.1312 27 1 10.5909 -7.5558 1.3449 28 6 9.1197 0.7945 1.9444 29 6 4.2899 1.4365 1.0886 30 6 3.8260 1.4289 2.5224 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6766 1.9564 -0.8900 38 1 6.4312 1.4424 -1.4114 39 1 6.7546 -0.2785 -0.3218 40 1 8.3815 0.2309 -0.8249 41 1 7.6721 -2.0801 1.0461 42 1 8.4314 -2.1861 -0.5652 43 1 10.8739 -0.6726 4.0063 44 1 11.6040 -0.0709 2.4806 45 1 11.0557 -2.9159 3.3495 46 1 12.3299 -2.2970 2.2609 47 1 12.4632 -5.4341 2.5828 48 1 8.9453 1.3787 2.8479 49 1 9.9081 1.2531 1.3475 50 1 3.7109 2.4547 2.8725 51 1 2.8689 0.9118 2.5919 52 1 4.5624 0.9147 3.1400 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036853821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:24 Heat of formation + Delta-G solvation = 65.366724 kcal Electronic energy + Delta-G solvation = -31481.297295 eV Core-core repulsion = 27483.003691 eV Total energy + Delta-G solvation = -3998.293604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.71109 -39.80392 -37.99370 -35.85296 -35.25979 -32.78849 -32.62639 -31.57711 -31.44427 -29.62712 -28.31043 -27.28312 -26.63534 -24.91653 -23.72892 -22.62418 -22.24047 -21.78514 -20.49512 -19.94966 -19.57405 -18.68020 -17.35358 -16.52293 -16.13042 -15.96757 -15.50985 -15.30205 -15.04863 -14.76622 -14.53823 -14.27969 -13.88232 -13.73270 -13.59783 -13.46837 -13.03160 -12.95481 -12.83451 -12.70181 -12.55071 -12.45061 -12.32959 -12.23370 -11.83422 -11.59420 -11.43099 -11.36602 -11.34214 -10.99200 -10.82136 -10.75847 -10.66120 -10.10254 -10.04756 -9.85670 -9.65072 -9.61530 -9.50362 -9.38124 -8.68697 -8.61002 -8.35156 -6.81145 -5.69889 -3.02699 1.44716 2.11276 2.15370 3.09086 3.39886 3.41533 3.45565 3.47948 4.12013 4.29361 4.37928 4.50437 4.55420 4.66608 4.73308 4.88081 4.94937 5.03168 5.14696 5.17703 5.21055 5.27709 5.30120 5.36763 5.41701 5.50840 5.55285 5.58333 5.61452 5.64813 5.69604 5.76318 5.78386 5.86901 5.95697 6.09731 6.20790 6.24631 6.26939 6.29530 6.43080 6.58934 6.66477 6.67829 6.69320 6.91599 7.11891 7.41814 7.58039 7.62497 7.65413 7.83437 8.26528 8.39906 9.21458 9.85151 10.53546 11.42774 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012801 B = 0.002795 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.855266 B =10015.567803 C =11351.174993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.129 3.871 4 N -0.361 5.361 5 N -0.298 5.298 6 C 0.083 3.917 7 C -0.287 4.287 8 C 0.593 3.407 9 O -0.552 6.552 10 N -0.601 5.601 11 C 0.109 3.891 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.022 0.978 15 C -0.123 4.123 16 H 0.079 0.921 17 C -0.136 4.136 18 C 0.177 3.823 19 N -0.596 5.596 20 C -0.223 4.223 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.128 3.872 29 C 0.146 3.854 30 C -0.094 4.094 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.190 0.810 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.251 0.749 48 H 0.090 0.910 49 H 0.068 0.932 50 H 0.088 0.912 51 H 0.071 0.929 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.446 13.773 -3.034 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.008 3.992 4 N -0.141 5.141 5 N -0.117 5.117 6 C -0.104 4.104 7 C -0.302 4.302 8 C 0.382 3.618 9 O -0.431 6.431 10 N -0.333 5.333 11 C -0.015 4.015 12 C -0.168 4.168 13 C 0.059 3.941 14 H 0.039 0.961 15 C -0.143 4.143 16 H 0.097 0.903 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.320 5.320 20 C -0.351 4.351 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.006 3.994 29 C 0.015 3.985 30 C -0.152 4.152 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.207 0.793 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.108 0.892 49 H 0.086 0.914 50 H 0.107 0.893 51 H 0.090 0.910 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.261 13.891 -3.519 24.816 hybrid contribution 0.661 -1.102 0.061 1.287 sum -19.600 12.789 -3.458 23.657 Atomic orbital electron populations 1.21695 0.94116 1.02695 1.02202 1.21957 0.96829 0.95569 1.03790 1.21866 0.73846 0.98779 1.04697 1.48455 1.06526 1.55897 1.03270 1.77163 1.01791 1.25269 1.07491 1.24077 0.95258 0.97343 0.93705 1.19992 0.92875 1.23507 0.93813 1.17324 0.81712 0.78875 0.83933 1.90728 1.82359 1.43851 1.26124 1.48098 1.12776 1.41871 1.30569 1.21959 1.01817 0.90576 0.87124 1.21934 0.98270 0.94635 1.01919 1.20755 0.91037 0.89357 0.92909 0.96111 1.22676 0.97892 0.94621 0.99117 0.90272 1.22719 0.95055 1.00296 0.99461 1.21529 0.94360 0.88820 0.90022 1.44221 1.47932 1.06373 1.33466 1.19040 1.21065 0.85621 1.09383 0.90363 1.24787 0.99313 0.98137 0.98306 1.69951 1.30395 1.30687 1.25891 0.86090 0.77235 0.84261 0.78471 1.20544 1.21822 1.21854 1.21614 0.84364 0.97616 0.95824 1.21393 0.89986 0.96108 0.91016 1.20548 1.02149 1.04093 0.88404 0.92218 0.91791 0.92294 0.90665 0.91142 0.88747 0.88372 0.79299 0.89801 0.91849 0.91539 0.90701 0.92107 0.92351 0.92752 0.94430 0.93852 0.89206 0.91404 0.89331 0.91039 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.29 16 2 C -0.14 -0.90 6.26 -26.73 -0.17 -1.07 16 3 C 0.13 0.87 6.03 -4.04 -0.02 0.85 16 4 N -0.36 -3.83 3.58 -56.61 -0.20 -4.04 16 5 N -0.30 -3.69 12.50 30.86 0.39 -3.30 16 6 C 0.08 1.00 9.62 -16.98 -0.16 0.84 16 7 C -0.29 -3.84 5.15 -105.07 -0.54 -4.38 16 8 C 0.59 9.16 7.29 -12.52 -0.09 9.07 16 9 O -0.55 -9.87 15.74 5.27 0.08 -9.78 16 10 N -0.60 -8.97 3.00 -173.75 -0.52 -9.49 16 11 C 0.11 1.49 5.13 -3.49 -0.02 1.47 16 12 C -0.13 -2.20 5.48 -26.84 -0.15 -2.35 16 13 C 0.17 3.34 2.59 -67.67 -0.18 3.16 16 14 H 0.02 0.43 7.94 -51.93 -0.41 0.02 16 15 C -0.12 -2.20 2.86 -89.19 -0.26 -2.45 16 16 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 17 C -0.14 -2.54 6.53 -25.13 -0.16 -2.70 16 18 C 0.18 4.26 5.45 -1.91 -0.01 4.25 16 19 N -0.60 -14.82 3.35 -162.74 -0.54 -15.37 16 20 C -0.22 -6.05 9.88 -15.06 -0.15 -6.20 16 21 H 0.08 2.05 7.21 -52.48 -0.38 1.67 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -26.99 10.44 55.49 0.58 -26.41 16 24 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 28 C 0.13 1.98 5.97 -3.76 -0.02 1.95 16 29 C 0.15 1.70 7.00 -81.60 -0.57 1.13 16 30 C -0.09 -0.86 9.35 36.01 0.34 -0.52 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.44 7.64 -51.93 -0.40 0.05 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.19 1.85 7.28 -52.48 -0.38 1.46 16 39 H 0.08 1.06 4.92 -51.93 -0.26 0.80 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.23 8.13 -51.93 -0.42 0.80 16 42 H 0.07 1.30 7.62 -51.93 -0.40 0.90 16 43 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 44 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 45 H 0.05 1.46 7.21 -51.93 -0.37 1.08 16 46 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.09 1.42 6.98 -51.93 -0.36 1.06 16 49 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 50 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.07 0.46 7.71 -51.93 -0.40 0.06 16 52 H 0.09 1.01 7.71 -51.93 -0.40 0.61 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -33.33 403.50 -9.84 -43.17 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.79 Total: -0.23 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.89 Total: 2.41 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.30 Total: -58.61 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.33 -9.84 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036853821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.540 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds