Wall clock time and date at job start Wed Apr 1 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47370 * 2 1 4 4 N 1.46498 * 109.47448 * 179.97438 * 3 2 1 5 5 C 1.34257 * 125.75986 * 124.99753 * 4 3 2 6 6 C 1.38037 * 107.42322 * 180.02562 * 5 4 3 7 7 C 1.47427 * 126.42026 * 179.97438 * 6 5 4 8 8 O 1.21606 * 120.00456 * 151.41798 * 7 6 5 9 9 N 1.34781 * 119.99573 * 331.42067 * 7 6 5 10 10 C 1.46941 * 120.44212 * 356.43533 * 9 7 6 11 11 C 1.53592 * 108.54866 * 125.74707 * 10 9 7 12 12 H 1.09000 * 110.59946 * 172.12353 * 11 10 9 13 13 C 1.53373 * 108.68816 * 294.32514 * 11 10 9 14 14 C 1.53006 * 109.25135 * 60.26151 * 13 11 10 15 15 C 1.53006 * 109.79823 * 60.58073 * 14 13 11 16 16 C 1.53359 * 109.27353 * 299.42868 * 15 14 13 17 17 H 1.09007 * 111.08618 * 177.79278 * 16 15 14 18 18 C 1.46946 * 120.43731 * 176.41400 * 9 7 6 19 19 N 1.47573 * 107.76629 * 51.10892 * 11 10 9 20 20 C 1.36937 * 121.61273 * 120.48396 * 19 11 10 21 21 H 1.07998 * 120.00179 * 207.50617 * 20 19 11 22 22 C 1.38809 * 119.99701 * 27.49856 * 20 19 11 23 23 N 1.31617 * 120.00589 * 18.24981 * 22 20 19 24 24 Si 1.86808 * 119.99646 * 198.24695 * 22 20 19 25 25 H 1.48499 * 109.46699 * 90.00698 * 24 22 20 26 26 H 1.48500 * 109.46883 * 210.00264 * 24 22 20 27 27 H 1.48496 * 109.47256 * 330.00417 * 24 22 20 28 28 C 1.41301 * 107.16891 * 0.24004 * 6 5 4 29 29 C 1.50692 * 125.98797 * 179.73655 * 28 6 5 30 30 N 1.30449 * 108.01982 * 359.59155 * 28 6 5 31 31 H 1.09000 * 109.46580 * 59.99934 * 1 2 3 32 32 H 1.08994 * 109.47157 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46857 * 300.00677 * 1 2 3 34 34 H 1.08995 * 109.46970 * 239.99848 * 2 1 3 35 35 H 1.09000 * 109.46580 * 120.00066 * 2 1 3 36 36 H 1.09005 * 109.47066 * 60.00022 * 3 2 1 37 37 H 1.09000 * 109.47323 * 299.99611 * 3 2 1 38 38 H 1.08001 * 126.28742 * 359.97438 * 5 4 3 39 39 H 1.08999 * 109.62195 * 245.46805 * 10 9 7 40 40 H 1.09003 * 109.62090 * 6.03172 * 10 9 7 41 41 H 1.08998 * 109.50393 * 180.19473 * 13 11 10 42 42 H 1.08998 * 109.50466 * 300.28144 * 13 11 10 43 43 H 1.09009 * 109.41265 * 180.68209 * 14 13 11 44 44 H 1.09003 * 109.41996 * 300.54292 * 14 13 11 45 45 H 1.09008 * 109.50178 * 179.49012 * 15 14 13 46 46 H 1.09000 * 109.50374 * 59.37657 * 15 14 13 47 47 H 1.09001 * 109.63267 * 353.98058 * 18 9 7 48 48 H 1.09005 * 109.62445 * 114.55915 * 18 9 7 49 49 H 0.97000 * 120.00523 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.47101 * 90.00311 * 29 28 6 51 51 H 1.09002 * 109.47502 * 209.99963 * 29 28 6 52 52 H 1.09000 * 109.47503 * 330.00079 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2900 2.0671 -0.8916 6 6 5.6002 1.8177 -0.5356 7 6 6.8045 2.3049 -1.2325 8 8 7.8348 2.4855 -0.6122 9 7 6.7636 2.5502 -2.5572 10 6 5.5479 2.2618 -3.3305 11 6 5.1315 3.5363 -4.0797 12 1 4.3161 3.3254 -4.7716 13 6 4.7226 4.5990 -3.0522 14 6 5.9120 4.9014 -2.1385 15 6 7.0802 5.4370 -2.9689 16 6 7.4984 4.3781 -3.9964 17 1 8.3052 4.7447 -4.6311 18 6 7.9340 3.1102 -3.2470 19 7 6.3136 4.0373 -4.8074 20 6 6.3112 4.1788 -6.1695 21 1 7.2369 4.1080 -6.7214 22 6 5.1191 4.4130 -6.8408 23 7 4.0678 4.8521 -6.1818 24 14 5.0068 4.1050 -8.6799 25 1 4.5794 2.7036 -8.9218 26 1 4.0154 5.0350 -9.2779 27 1 6.3361 4.3316 -9.3018 28 6 5.5709 1.0027 0.6183 29 6 6.7716 0.4740 1.3597 30 7 4.3223 0.7907 0.9311 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6769 1.9563 -0.8900 38 1 3.9575 2.6560 -1.7337 39 1 5.7501 1.4655 -4.0469 40 1 4.7485 1.9563 -2.6554 41 1 4.4209 5.5092 -3.5704 42 1 3.8898 4.2267 -2.4555 43 1 5.6205 5.6477 -1.3994 44 1 6.2194 3.9880 -1.6294 45 1 7.9216 5.6594 -2.3123 46 1 6.7723 6.3453 -3.4869 47 1 8.7034 3.3623 -2.5172 48 1 8.3239 2.3809 -3.9572 49 1 3.2348 5.0161 -6.6510 50 1 7.0645 1.1859 2.1314 51 1 6.5216 -0.4808 1.8223 52 1 7.5972 0.3345 0.6618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039952920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:13 Heat of formation + Delta-G solvation = 100.746095 kcal Electronic energy + Delta-G solvation = -33260.290712 eV Core-core repulsion = 29263.531273 eV Total energy + Delta-G solvation = -3996.759439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.66430 -40.07591 -37.53337 -35.62814 -34.00639 -32.89674 -32.56654 -32.21425 -30.38955 -29.96908 -28.83756 -27.03740 -25.79519 -25.38451 -23.86005 -22.22706 -21.87200 -21.60440 -21.30193 -20.17520 -18.92920 -18.34212 -17.11471 -16.61134 -16.04899 -15.84609 -15.42191 -14.88155 -14.74076 -14.46548 -14.33882 -14.02151 -13.75177 -13.47670 -13.24477 -13.16829 -12.92792 -12.89818 -12.59843 -12.49029 -12.32191 -12.23194 -12.05987 -12.00747 -11.67732 -11.56776 -11.27744 -11.23221 -11.11039 -10.94012 -10.76865 -10.58776 -10.31057 -10.12611 -10.08188 -10.03764 -9.59486 -9.41152 -9.32375 -9.15993 -8.57266 -8.48483 -7.80462 -6.65759 -5.88948 -3.31014 1.64867 2.33984 2.34603 3.31430 3.39705 3.40063 3.51931 3.69572 4.23419 4.40288 4.56228 4.68998 4.73289 4.92014 5.02083 5.11012 5.17482 5.22625 5.26156 5.32355 5.38929 5.61912 5.68977 5.71211 5.74143 5.74445 5.76711 5.79240 5.83048 5.90457 5.92662 5.97748 6.01922 6.05374 6.19531 6.30382 6.37860 6.42152 6.49306 6.60213 6.64052 6.71159 6.80215 6.88495 7.01107 7.04568 7.13572 7.41212 7.48719 7.67245 7.70203 8.00217 8.30564 8.68956 9.07713 9.69772 10.31734 11.17934 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010950 B = 0.004213 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.525682 B = 6644.650433 C = 8366.507612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.129 3.871 4 N -0.361 5.361 5 C 0.089 3.911 6 C -0.283 4.283 7 C 0.594 3.406 8 O -0.556 6.556 9 N -0.587 5.587 10 C 0.063 3.937 11 C 0.176 3.824 12 H 0.117 0.883 13 C -0.114 4.114 14 C -0.142 4.142 15 C -0.120 4.120 16 C 0.152 3.848 17 H 0.078 0.922 18 C 0.104 3.896 19 N -0.578 5.578 20 C -0.247 4.247 21 H 0.068 0.932 22 C 0.004 3.996 23 N -0.899 5.899 24 Si 0.902 3.098 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.124 3.876 29 C -0.068 4.068 30 N -0.304 5.304 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.201 0.799 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.029 0.971 43 H 0.030 0.970 44 H 0.083 0.917 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.083 0.917 48 H 0.061 0.939 49 H 0.254 0.746 50 H 0.080 0.920 51 H 0.068 0.932 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.373 -7.434 11.359 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.008 3.992 4 N -0.139 5.139 5 C -0.061 4.061 6 C -0.298 4.298 7 C 0.384 3.616 8 O -0.436 6.436 9 N -0.319 5.319 10 C -0.061 4.061 11 C 0.068 3.932 12 H 0.134 0.866 13 C -0.153 4.153 14 C -0.180 4.180 15 C -0.159 4.159 16 C 0.044 3.956 17 H 0.096 0.904 18 C -0.020 4.020 19 N -0.299 5.299 20 C -0.376 4.376 21 H 0.086 0.914 22 C -0.194 4.194 23 N -0.543 5.543 24 Si 0.732 3.268 25 H -0.215 1.215 26 H -0.219 1.219 27 H -0.205 1.205 28 C -0.043 4.043 29 C -0.127 4.127 30 N -0.126 5.126 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.217 0.783 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.047 0.953 43 H 0.049 0.951 44 H 0.100 0.900 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.101 0.899 48 H 0.079 0.921 49 H 0.064 0.936 50 H 0.098 0.902 51 H 0.087 0.913 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.942 -7.854 12.364 15.459 hybrid contribution 0.099 0.529 -1.737 1.818 sum -4.844 -7.326 10.627 13.786 Atomic orbital electron populations 1.21714 0.94372 1.02487 1.02257 1.21794 0.96417 0.95267 1.03880 1.21929 0.73662 0.99295 1.04323 1.48486 1.06620 1.38330 1.20483 1.23988 0.90721 0.96811 0.94557 1.20273 0.92872 1.13512 1.03105 1.17032 0.86569 0.76547 0.81418 1.90712 1.32232 1.54481 1.66195 1.47944 1.15434 1.61759 1.06774 1.23249 0.86619 1.00990 0.95255 1.21190 0.91961 0.88150 0.91912 0.86553 1.21902 0.94858 1.02022 0.96543 1.22152 0.96588 1.01520 0.97760 1.21881 0.97201 0.99301 0.97518 1.21258 0.91523 0.91258 0.91596 0.90374 1.22212 0.87309 0.96668 0.95788 1.44392 1.09649 1.73410 1.02400 1.19185 0.94185 1.42907 0.81355 0.91406 1.24976 0.97440 0.99283 0.97729 1.69967 1.02453 1.46814 1.35082 0.86299 0.77476 0.77629 0.85421 1.21515 1.21861 1.20484 1.22362 0.93363 0.95080 0.93478 1.20186 0.92344 1.00439 0.99734 1.77038 1.01096 1.20823 1.13670 0.92170 0.91976 0.92341 0.91208 0.90390 0.89474 0.88136 0.78256 0.91921 0.89916 0.90437 0.95270 0.95085 0.89955 0.93859 0.92429 0.89910 0.92072 0.93637 0.90158 0.91290 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.14 -1.14 6.11 -26.73 -0.16 -1.30 16 3 C 0.13 1.19 6.49 -4.05 -0.03 1.16 16 4 N -0.36 -4.74 3.65 -60.81 -0.22 -4.96 16 5 C 0.09 1.28 9.10 -16.57 -0.15 1.13 16 6 C -0.28 -4.65 5.59 -105.07 -0.59 -5.24 16 7 C 0.59 10.89 4.94 -12.52 -0.06 10.83 16 8 O -0.56 -11.30 15.25 5.27 0.08 -11.22 16 9 N -0.59 -10.62 1.65 -173.51 -0.29 -10.91 16 10 C 0.06 1.12 5.54 -3.49 -0.02 1.10 16 11 C 0.18 3.61 2.66 -66.84 -0.18 3.43 16 12 H 0.12 2.71 5.86 -51.93 -0.30 2.41 16 13 C -0.11 -2.23 5.23 -26.53 -0.14 -2.37 16 14 C -0.14 -2.70 5.55 -26.72 -0.15 -2.85 16 15 C -0.12 -2.33 5.58 -26.54 -0.15 -2.48 16 16 C 0.15 3.02 3.62 -66.85 -0.24 2.78 16 17 H 0.08 1.54 8.01 -51.92 -0.42 1.12 16 18 C 0.10 1.91 5.88 -3.49 -0.02 1.89 16 19 N -0.58 -13.04 2.53 -155.43 -0.39 -13.43 16 20 C -0.25 -6.21 9.71 -15.06 -0.15 -6.36 16 21 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 22 C 0.00 0.11 4.98 -17.43 -0.09 0.02 16 23 N -0.90 -23.41 10.99 55.49 0.61 -22.80 16 24 Si 0.90 20.38 29.59 -169.99 -5.03 15.35 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 C 0.12 1.92 7.26 -82.02 -0.60 1.33 16 29 C -0.07 -0.89 9.83 36.00 0.35 -0.53 16 30 N -0.30 -4.52 12.33 33.90 0.42 -4.10 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.75 8.06 -51.93 -0.42 0.34 16 38 H 0.20 2.78 3.41 -52.49 -0.18 2.60 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.30 2.98 -51.93 -0.15 1.14 16 41 H 0.08 1.77 8.00 -51.93 -0.42 1.35 16 42 H 0.03 0.49 6.06 -51.93 -0.31 0.17 16 43 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 44 H 0.08 1.56 2.31 -52.48 -0.12 1.44 16 45 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.08 1.50 7.00 -51.93 -0.36 1.14 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 49 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 50 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.08 1.15 7.41 -51.93 -0.39 0.76 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -29.41 386.45 -9.11 -38.52 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.12 Total: 5.76 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.99 Total: 1.96 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.13 Total: -56.20 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.41 -9.11 -38.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039952920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.266 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds