Wall clock time and date at job start Wed Apr 1 2020 04:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47009 * 2 1 4 4 N 1.46495 * 109.47067 * 120.00107 * 2 1 3 5 5 N 1.28447 * 125.19519 * 306.50827 * 4 2 1 6 6 C 1.30854 * 110.93081 * 179.97438 * 5 4 2 7 7 C 1.39675 * 107.86262 * 359.77334 * 6 5 4 8 8 C 1.36607 * 125.19233 * 126.48566 * 4 2 1 9 9 C 1.47163 * 126.88125 * 359.97438 * 8 4 2 10 10 O 1.21630 * 120.00232 * 13.51269 * 9 8 4 11 11 N 1.34780 * 119.99893 * 193.51519 * 9 8 4 12 12 C 1.48163 * 127.02585 * 358.70297 * 11 9 8 13 13 C 1.55045 * 103.31542 * 140.99553 * 12 11 9 14 14 C 1.54151 * 102.73515 * 36.98258 * 13 12 11 15 15 C 1.47610 * 127.02624 * 178.72382 * 11 9 8 16 16 C 1.52496 * 110.05977 * 97.48711 * 14 13 12 17 17 C 1.53133 * 109.60424 * 181.75407 * 16 14 13 18 18 C 1.53189 * 109.31770 * 299.46580 * 17 16 14 19 19 N 1.47017 * 108.85036 * 55.05254 * 18 17 16 20 20 C 1.36936 * 120.66593 * 125.97263 * 19 18 17 21 21 H 1.08004 * 119.99805 * 322.58523 * 20 19 18 22 22 C 1.38812 * 119.99949 * 142.58437 * 20 19 18 23 23 N 1.31614 * 120.00054 * 358.29628 * 22 20 19 24 24 Si 1.86799 * 120.00026 * 178.29491 * 22 20 19 25 25 H 1.48502 * 109.47062 * 60.00019 * 24 22 20 26 26 H 1.48494 * 109.47485 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47174 * 300.00286 * 24 22 20 28 28 C 1.47036 * 118.65406 * 305.99757 * 19 18 17 29 29 H 1.08995 * 109.47256 * 300.00066 * 1 2 3 30 30 H 1.09005 * 109.47062 * 59.99870 * 1 2 3 31 31 H 1.09005 * 109.47314 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47028 * 240.00041 * 2 1 3 33 33 H 1.08990 * 109.47583 * 299.99615 * 3 2 1 34 34 H 1.09004 * 109.47192 * 60.00142 * 3 2 1 35 35 H 1.09005 * 109.46859 * 179.97438 * 3 2 1 36 36 H 1.08006 * 126.06721 * 180.02562 * 6 5 4 37 37 H 1.07998 * 127.31916 * 180.23518 * 7 6 5 38 38 H 1.08997 * 110.64292 * 259.45032 * 12 11 9 39 39 H 1.08995 * 110.65312 * 22.36858 * 12 11 9 40 40 H 1.09004 * 110.75442 * 278.67699 * 13 12 11 41 41 H 1.08997 * 110.75734 * 155.29559 * 13 12 11 42 42 H 1.08995 * 109.97229 * 85.99187 * 15 11 9 43 43 H 1.08999 * 109.97088 * 324.71961 * 15 11 9 44 44 H 1.08996 * 109.45102 * 61.70709 * 16 14 13 45 45 H 1.09002 * 109.42761 * 301.77620 * 16 14 13 46 46 H 1.09005 * 109.50020 * 59.42749 * 17 16 14 47 47 H 1.08990 * 109.50494 * 179.50184 * 17 16 14 48 48 H 1.08997 * 109.56629 * 174.90759 * 18 17 16 49 49 H 1.08996 * 109.57008 * 295.26733 * 18 17 16 50 50 H 0.97001 * 120.00188 * 180.02562 * 23 22 20 51 51 H 1.08995 * 109.58509 * 293.00950 * 28 19 18 52 52 H 1.08993 * 109.70187 * 172.65715 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 7 1.6763 -0.4130 2.4027 6 6 2.2794 -1.2037 3.2532 7 6 3.0863 -2.0808 2.5248 8 6 2.9066 -1.7284 1.1985 9 6 3.5401 -2.3514 0.0254 10 8 3.4868 -1.8017 -1.0583 11 7 4.1795 -3.5312 0.1518 12 6 4.3615 -4.3187 1.3935 13 6 4.1801 -5.7831 0.9174 14 6 4.8430 -5.7725 -0.4743 15 6 4.8418 -4.3024 -0.9184 16 6 6.2720 -6.2959 -0.3770 17 6 6.9347 -6.2399 -1.7564 18 6 6.1462 -7.1177 -2.7334 19 7 4.7405 -6.6870 -2.7307 20 6 4.1095 -6.3553 -3.8999 21 1 4.6490 -5.8309 -4.6748 22 6 2.7764 -6.6930 -4.0891 23 7 2.1285 -7.3615 -3.1587 24 14 1.9022 -6.1988 -5.6641 25 1 2.5953 -6.8086 -6.8273 26 1 0.4962 -6.6745 -5.6201 27 1 1.9199 -4.7198 -5.7970 28 6 4.0264 -6.6191 -1.4473 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 2.1694 -1.1844 4.3275 37 1 3.7179 -2.8657 2.9139 38 1 5.3611 -4.1680 1.8011 39 1 3.6033 -4.0548 2.1308 40 1 3.1226 -6.0358 0.8397 41 1 4.6954 -6.4731 1.5855 42 1 5.8656 -3.9525 -1.0504 43 1 4.2884 -4.1957 -1.8513 44 1 6.2577 -7.3266 -0.0228 45 1 6.8370 -5.6796 0.3223 46 1 6.9410 -5.2107 -2.1155 47 1 7.9586 -6.6060 -1.6833 48 1 6.5599 -7.0102 -3.7361 49 1 6.2091 -8.1598 -2.4203 50 1 1.1971 -7.5978 -3.2910 51 1 3.9044 -7.6241 -1.0434 52 1 3.0474 -6.1635 -1.5952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040223878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:21 Heat of formation + Delta-G solvation = 75.219954 kcal Electronic energy + Delta-G solvation = -32477.704145 eV Core-core repulsion = 28479.837809 eV Total energy + Delta-G solvation = -3997.866336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.59746 -40.00329 -38.17066 -36.11676 -35.50083 -33.13572 -31.79219 -30.65773 -30.40731 -29.98020 -28.85032 -27.46657 -26.03918 -25.28950 -23.76382 -23.10946 -22.19480 -22.01118 -20.92270 -20.40116 -18.98856 -18.13590 -17.05973 -16.63242 -16.38077 -16.10741 -15.41917 -15.24926 -14.97736 -14.81066 -14.21453 -14.02233 -13.99403 -13.78550 -13.37043 -13.27321 -13.10696 -12.87588 -12.74972 -12.40541 -12.38980 -12.31232 -12.17738 -11.71523 -11.60761 -11.53845 -11.39119 -11.17745 -10.97587 -10.85136 -10.76386 -10.53109 -10.43783 -10.29019 -10.15886 -9.85239 -9.77597 -9.49001 -9.41153 -9.22008 -9.02111 -8.50145 -8.39673 -6.51747 -5.80359 -3.33670 1.33641 2.30212 2.61067 3.18055 3.32892 3.39411 3.43682 3.45782 4.37451 4.42501 4.48978 4.74958 4.81763 4.87922 5.01650 5.07723 5.14422 5.19646 5.33597 5.37086 5.41909 5.46610 5.50285 5.53480 5.54479 5.60113 5.63704 5.70020 5.71479 5.79886 5.95857 5.99491 6.00262 6.05249 6.13666 6.20515 6.30535 6.38124 6.40054 6.46457 6.48854 6.72249 6.73972 6.76080 6.82988 6.89698 7.01432 7.32048 7.64981 7.69369 7.80745 8.05002 8.25586 8.51681 9.23809 9.82170 10.43995 11.27760 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.003891 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.589475 B = 7193.688287 C = 8824.781054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 C -0.156 4.156 4 N -0.249 5.249 5 N -0.278 5.278 6 C -0.009 4.009 7 C -0.207 4.207 8 C -0.024 4.024 9 C 0.602 3.398 10 O -0.541 6.541 11 N -0.599 5.599 12 C 0.080 3.920 13 C -0.124 4.124 14 C -0.095 4.095 15 C 0.129 3.871 16 C -0.093 4.093 17 C -0.139 4.139 18 C 0.145 3.855 19 N -0.591 5.591 20 C -0.257 4.257 21 H 0.061 0.939 22 C 0.014 3.986 23 N -0.903 5.903 24 Si 0.900 3.100 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.191 3.809 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.184 0.816 37 H 0.171 0.829 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.017 0.983 50 H 0.255 0.745 51 H 0.021 0.979 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 9.826 13.484 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 C -0.214 4.214 4 N -0.038 5.038 5 N -0.111 5.111 6 C -0.185 4.185 7 C -0.235 4.235 8 C -0.152 4.152 9 C 0.389 3.611 10 O -0.420 6.420 11 N -0.331 5.331 12 C -0.043 4.043 13 C -0.163 4.163 14 C -0.098 4.098 15 C 0.008 3.992 16 C -0.131 4.131 17 C -0.178 4.178 18 C 0.018 3.982 19 N -0.313 5.313 20 C -0.386 4.386 21 H 0.078 0.922 22 C -0.185 4.185 23 N -0.546 5.546 24 Si 0.729 3.271 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.065 3.935 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.151 0.849 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.201 0.799 37 H 0.188 0.812 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.035 0.965 50 H 0.065 0.935 51 H 0.039 0.961 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.838 11.109 12.635 16.924 hybrid contribution 0.104 -0.548 -0.583 0.807 sum 1.942 10.560 12.053 16.142 Atomic orbital electron populations 1.22104 0.92754 1.03297 1.03477 1.22046 0.95970 0.94512 0.84628 1.22090 1.02044 0.93958 1.03275 1.45979 1.29396 1.22768 1.05651 1.73082 1.23207 1.24873 0.89910 1.23550 0.99200 0.95923 0.99800 1.22724 1.05792 1.03999 0.91026 1.21431 1.01399 0.96543 0.95875 1.16455 0.78360 0.80097 0.86174 1.90764 1.61077 1.62437 1.27706 1.48524 1.53536 1.19243 1.11816 1.23167 1.01693 0.91656 0.87770 1.22742 1.02202 0.94646 0.96671 1.21893 0.96959 0.95061 0.95860 1.22211 0.96587 0.89301 0.91068 1.21374 0.94540 1.00231 0.96929 1.22089 0.97984 1.01308 0.96428 1.20945 0.86266 0.94362 0.96599 1.43964 1.07265 1.77207 1.02896 1.19046 0.94433 1.30753 0.94418 0.92150 1.25311 0.98491 0.97358 0.97347 1.69899 1.10150 1.41314 1.33284 0.86418 0.78614 0.78396 0.83650 1.20752 1.21598 1.20795 1.20756 0.94665 0.95020 0.83034 0.91084 0.90258 0.91882 0.84934 0.90239 0.91456 0.91919 0.79932 0.81203 0.90895 0.88784 0.90390 0.90323 0.92166 0.88759 0.92225 0.93516 0.92339 0.93128 0.92920 0.96517 0.93524 0.96065 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.28 37.16 0.34 -1.43 16 2 C 0.13 1.69 3.48 -67.94 -0.24 1.45 16 3 C -0.16 -1.70 9.46 37.16 0.35 -1.35 16 4 N -0.25 -3.62 3.09 -50.69 -0.16 -3.78 16 5 N -0.28 -3.80 11.50 30.59 0.35 -3.45 16 6 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 7 C -0.21 -2.51 9.28 -38.99 -0.36 -2.87 16 8 C -0.02 -0.36 6.87 -82.06 -0.56 -0.93 16 9 C 0.60 10.63 7.84 -12.64 -0.10 10.53 16 10 O -0.54 -11.15 14.90 5.25 0.08 -11.07 16 11 N -0.60 -9.80 3.30 -171.19 -0.56 -10.37 16 12 C 0.08 0.98 5.97 -2.05 -0.01 0.97 16 13 C -0.12 -1.72 6.15 -25.05 -0.15 -1.88 16 14 C -0.10 -1.63 0.62 -154.05 -0.09 -1.72 16 15 C 0.13 2.37 5.56 -3.14 -0.02 2.35 16 16 C -0.09 -1.41 4.40 -26.92 -0.12 -1.53 16 17 C -0.14 -2.28 5.87 -26.56 -0.16 -2.44 16 18 C 0.14 2.93 6.50 -3.66 -0.02 2.90 16 19 N -0.59 -14.22 2.74 -172.49 -0.47 -14.69 16 20 C -0.26 -6.93 9.53 -15.06 -0.14 -7.07 16 21 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 22 C 0.01 0.40 5.21 -17.43 -0.09 0.30 16 23 N -0.90 -25.76 11.06 55.49 0.61 -25.14 16 24 Si 0.90 21.89 29.55 -169.99 -5.02 16.86 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.19 4.29 3.49 -3.93 -0.01 4.27 16 29 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.13 2.04 5.57 -51.93 -0.29 1.75 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.18 1.44 8.06 -52.48 -0.42 1.01 16 37 H 0.17 1.60 5.16 -52.49 -0.27 1.33 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.01 4.48 -51.93 -0.23 0.77 16 40 H 0.08 1.19 7.84 -51.93 -0.41 0.79 16 41 H 0.08 0.91 7.83 -51.93 -0.41 0.50 16 42 H 0.06 1.06 6.54 -51.93 -0.34 0.72 16 43 H 0.09 2.15 7.53 -51.93 -0.39 1.76 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 1.01 6.65 -51.93 -0.35 0.66 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 1.06 7.94 -51.93 -0.41 0.65 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.09 2.26 6.35 -51.93 -0.33 1.93 16 LS Contribution 396.76 15.07 5.98 5.98 Total: -1.00 -31.61 396.76 -9.26 -40.87 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.46 Total: 3.53 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.60 Total: 1.26 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.23 Total: -57.43 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.61 -9.26 -40.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040223878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.092 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds