Wall clock time and date at job start Wed Apr 1 2020 04:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47009 * 2 1 4 4 N 1.46495 * 109.47067 * 120.00107 * 2 1 3 5 5 N 1.28447 * 125.19519 * 306.50827 * 4 2 1 6 6 C 1.30854 * 110.93081 * 179.97438 * 5 4 2 7 7 C 1.39675 * 107.86262 * 359.77334 * 6 5 4 8 8 C 1.36607 * 125.19233 * 126.48566 * 4 2 1 9 9 C 1.47163 * 126.88125 * 359.97438 * 8 4 2 10 10 O 1.21630 * 120.00232 * 13.51269 * 9 8 4 11 11 N 1.34780 * 119.99893 * 193.51519 * 9 8 4 12 12 C 1.48163 * 127.02585 * 358.70297 * 11 9 8 13 13 C 1.55045 * 103.31542 * 140.99553 * 12 11 9 14 14 C 1.54151 * 102.73515 * 36.98258 * 13 12 11 15 15 C 1.47610 * 127.02624 * 178.72382 * 11 9 8 16 16 C 1.52496 * 110.05977 * 97.48711 * 14 13 12 17 17 C 1.53133 * 109.60424 * 181.75407 * 16 14 13 18 18 C 1.53189 * 109.31770 * 299.46580 * 17 16 14 19 19 N 1.47017 * 108.85036 * 55.05254 * 18 17 16 20 20 C 1.36936 * 120.66593 * 125.97263 * 19 18 17 21 21 H 1.08004 * 119.99805 * 322.58523 * 20 19 18 22 22 C 1.38812 * 119.99949 * 142.58437 * 20 19 18 23 23 N 1.31614 * 120.00054 * 358.29628 * 22 20 19 24 24 Si 1.86799 * 120.00026 * 178.29491 * 22 20 19 25 25 H 1.48502 * 109.47062 * 60.00019 * 24 22 20 26 26 H 1.48494 * 109.47485 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47174 * 300.00286 * 24 22 20 28 28 C 1.47036 * 118.65406 * 305.99757 * 19 18 17 29 29 H 1.08995 * 109.47256 * 300.00066 * 1 2 3 30 30 H 1.09005 * 109.47062 * 59.99870 * 1 2 3 31 31 H 1.09005 * 109.47314 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47028 * 240.00041 * 2 1 3 33 33 H 1.08990 * 109.47583 * 299.99615 * 3 2 1 34 34 H 1.09004 * 109.47192 * 60.00142 * 3 2 1 35 35 H 1.09005 * 109.46859 * 179.97438 * 3 2 1 36 36 H 1.08006 * 126.06721 * 180.02562 * 6 5 4 37 37 H 1.07998 * 127.31916 * 180.23518 * 7 6 5 38 38 H 1.08997 * 110.64292 * 259.45032 * 12 11 9 39 39 H 1.08995 * 110.65312 * 22.36858 * 12 11 9 40 40 H 1.09004 * 110.75442 * 278.67699 * 13 12 11 41 41 H 1.08997 * 110.75734 * 155.29559 * 13 12 11 42 42 H 1.08995 * 109.97229 * 85.99187 * 15 11 9 43 43 H 1.08999 * 109.97088 * 324.71961 * 15 11 9 44 44 H 1.08996 * 109.45102 * 61.70709 * 16 14 13 45 45 H 1.09002 * 109.42761 * 301.77620 * 16 14 13 46 46 H 1.09005 * 109.50020 * 59.42749 * 17 16 14 47 47 H 1.08990 * 109.50494 * 179.50184 * 17 16 14 48 48 H 1.08997 * 109.56629 * 174.90759 * 18 17 16 49 49 H 1.08996 * 109.57008 * 295.26733 * 18 17 16 50 50 H 0.97001 * 120.00188 * 180.02562 * 23 22 20 51 51 H 1.08995 * 109.58509 * 293.00950 * 28 19 18 52 52 H 1.08993 * 109.70187 * 172.65715 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 7 1.6763 -0.4130 2.4027 6 6 2.2794 -1.2037 3.2532 7 6 3.0863 -2.0808 2.5248 8 6 2.9066 -1.7284 1.1985 9 6 3.5401 -2.3514 0.0254 10 8 3.4868 -1.8017 -1.0583 11 7 4.1795 -3.5312 0.1518 12 6 4.3615 -4.3187 1.3935 13 6 4.1801 -5.7831 0.9174 14 6 4.8430 -5.7725 -0.4743 15 6 4.8418 -4.3024 -0.9184 16 6 6.2720 -6.2959 -0.3770 17 6 6.9347 -6.2399 -1.7564 18 6 6.1462 -7.1177 -2.7334 19 7 4.7405 -6.6870 -2.7307 20 6 4.1095 -6.3553 -3.8999 21 1 4.6490 -5.8309 -4.6748 22 6 2.7764 -6.6930 -4.0891 23 7 2.1285 -7.3615 -3.1587 24 14 1.9022 -6.1988 -5.6641 25 1 2.5953 -6.8086 -6.8273 26 1 0.4962 -6.6745 -5.6201 27 1 1.9199 -4.7198 -5.7970 28 6 4.0264 -6.6191 -1.4473 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 2.1694 -1.1844 4.3275 37 1 3.7179 -2.8657 2.9139 38 1 5.3611 -4.1680 1.8011 39 1 3.6033 -4.0548 2.1308 40 1 3.1226 -6.0358 0.8397 41 1 4.6954 -6.4731 1.5855 42 1 5.8656 -3.9525 -1.0504 43 1 4.2884 -4.1957 -1.8513 44 1 6.2577 -7.3266 -0.0228 45 1 6.8370 -5.6796 0.3223 46 1 6.9410 -5.2107 -2.1155 47 1 7.9586 -6.6060 -1.6833 48 1 6.5599 -7.0102 -3.7361 49 1 6.2091 -8.1598 -2.4203 50 1 1.1971 -7.5978 -3.2910 51 1 3.9044 -7.6241 -1.0434 52 1 3.0474 -6.1635 -1.5952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040223878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:20 Heat of formation + Delta-G solvation = 56.305659 kcal Electronic energy + Delta-G solvation = -32478.524330 eV Core-core repulsion = 28479.837809 eV Total energy + Delta-G solvation = -3998.686521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.61017 -41.35182 -39.60698 -37.47779 -36.64261 -34.89891 -33.25132 -31.90266 -31.68406 -31.37409 -30.14049 -28.36125 -27.57247 -27.07648 -25.03106 -24.08650 -23.89179 -23.15199 -22.06846 -21.88633 -20.08194 -19.63904 -18.53784 -18.27826 -17.59040 -17.27147 -16.82113 -16.52686 -16.40783 -15.97975 -15.75512 -15.36143 -15.24138 -15.16735 -14.85633 -14.59501 -14.39199 -14.15648 -14.02718 -13.76401 -13.54926 -13.31423 -13.23813 -13.10333 -13.02041 -12.80154 -12.78217 -12.64453 -12.49778 -12.40002 -12.22372 -12.20556 -11.92546 -11.83186 -11.61788 -11.38543 -11.09864 -11.02575 -10.91383 -10.56663 -10.29974 -10.00630 -9.72620 -8.50698 -7.90074 -5.45505 0.21462 1.24359 1.38628 1.41048 1.46305 1.67978 1.98961 2.10949 2.45135 3.23989 3.29497 3.42824 3.62853 3.75043 3.80722 3.87035 3.93748 3.99979 4.09590 4.14909 4.27973 4.33293 4.36431 4.46542 4.51765 4.54410 4.55307 4.63161 4.65482 4.70038 4.79642 4.80333 4.86696 4.93898 4.99113 5.02434 5.05699 5.06946 5.12527 5.15077 5.17678 5.24479 5.41079 5.44415 5.53341 5.56444 5.58415 5.69264 5.77811 5.79523 6.41356 6.43317 6.89741 7.10889 7.17441 7.86344 8.39814 9.13797 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.003891 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.589475 B = 7193.688287 C = 8824.781054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.120 3.880 3 C -0.146 4.146 4 N -0.261 5.261 5 N -0.290 5.290 6 C -0.004 4.004 7 C -0.186 4.186 8 C -0.058 4.058 9 C 0.592 3.408 10 O -0.588 6.588 11 N -0.602 5.602 12 C 0.083 3.917 13 C -0.118 4.118 14 C -0.087 4.087 15 C 0.140 3.860 16 C -0.087 4.087 17 C -0.130 4.130 18 C 0.139 3.861 19 N -0.610 5.610 20 C -0.263 4.263 21 H 0.054 0.946 22 C -0.037 4.037 23 N -0.929 5.929 24 Si 0.954 3.046 25 H -0.270 1.270 26 H -0.290 1.290 27 H -0.287 1.287 28 C 0.204 3.796 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.224 0.776 37 H 0.202 0.798 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.054 0.946 41 H 0.117 0.883 42 H 0.070 0.930 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.017 0.983 50 H 0.249 0.751 51 H 0.000 1.000 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 10.340 16.910 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 C -0.204 4.204 4 N -0.050 5.050 5 N -0.123 5.123 6 C -0.179 4.179 7 C -0.215 4.215 8 C -0.186 4.186 9 C 0.381 3.619 10 O -0.470 6.470 11 N -0.333 5.333 12 C -0.038 4.038 13 C -0.157 4.157 14 C -0.090 4.090 15 C 0.017 3.983 16 C -0.125 4.125 17 C -0.169 4.169 18 C 0.013 3.987 19 N -0.333 5.333 20 C -0.394 4.394 21 H 0.071 0.929 22 C -0.234 4.234 23 N -0.574 5.574 24 Si 0.783 3.217 25 H -0.196 1.196 26 H -0.216 1.216 27 H -0.213 1.213 28 C 0.079 3.921 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.241 0.759 37 H 0.219 0.781 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.088 0.912 43 H 0.052 0.948 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.104 0.896 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.058 0.942 51 H 0.018 0.982 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.535 11.602 16.088 20.147 hybrid contribution -0.392 -0.726 -1.654 1.849 sum 3.142 10.876 14.433 18.344 Atomic orbital electron populations 1.22058 0.91402 1.02482 1.04820 1.22065 0.97043 0.95215 0.83645 1.22030 1.00997 0.92734 1.04596 1.46107 1.29729 1.22990 1.06137 1.73081 1.23732 1.25650 0.89818 1.24280 0.97760 0.94561 1.01336 1.23132 1.05044 1.03918 0.89372 1.21350 1.03134 0.98038 0.96080 1.16946 0.78105 0.80294 0.86513 1.90731 1.62695 1.63877 1.29700 1.48620 1.52896 1.18976 1.12834 1.23485 1.04580 0.89389 0.86309 1.22749 1.00972 0.96875 0.95097 1.21687 0.98197 0.92909 0.96192 1.21906 0.96075 0.90686 0.89594 1.21384 0.92657 1.01551 0.96860 1.21983 0.99201 0.99692 0.96009 1.21115 0.84530 0.95264 0.97747 1.44214 1.08829 1.77669 1.02636 1.19280 0.94823 1.29908 0.95340 0.92872 1.25937 0.99312 0.98153 0.99952 1.70060 1.09879 1.42863 1.34587 0.85552 0.77573 0.77605 0.81009 1.19596 1.21616 1.21307 1.20441 0.93626 0.94312 0.83768 0.90285 0.88282 0.93697 0.88043 0.88280 0.90660 0.93396 0.75920 0.78098 0.87027 0.86683 0.92684 0.86495 0.91191 0.94769 0.91109 0.89502 0.93418 0.89591 0.93710 0.96463 0.94195 0.98185 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.28 71.98 0.67 -2.72 16 2 C 0.12 3.28 3.48 44.99 0.16 3.44 16 3 C -0.15 -3.18 9.46 71.98 0.68 -2.50 16 4 N -0.26 -7.53 3.09 -314.30 -0.97 -8.50 16 5 N -0.29 -7.41 11.50 -57.14 -0.66 -8.07 16 6 C 0.00 -0.08 12.03 85.19 1.02 0.95 16 7 C -0.19 -3.91 9.28 22.65 0.21 -3.70 16 8 C -0.06 -1.74 6.87 40.78 0.28 -1.46 16 9 C 0.59 21.56 7.84 86.59 0.68 22.24 16 10 O -0.59 -26.08 14.90 -4.13 -0.06 -26.14 16 11 N -0.60 -19.49 3.30 -813.78 -2.68 -22.18 16 12 C 0.08 1.74 5.97 86.76 0.52 2.26 16 13 C -0.12 -3.00 6.15 31.68 0.19 -2.80 16 14 C -0.09 -2.93 0.62 -51.88 -0.03 -2.96 16 15 C 0.14 5.20 5.56 86.36 0.48 5.68 16 16 C -0.09 -2.33 4.40 30.47 0.13 -2.20 16 17 C -0.13 -3.98 5.87 30.70 0.18 -3.80 16 18 C 0.14 5.62 6.50 86.34 0.56 6.19 16 19 N -0.61 -30.58 2.74 -699.64 -1.92 -32.49 16 20 C -0.26 -14.94 9.53 84.03 0.80 -14.13 16 21 H 0.05 3.02 7.83 -2.91 -0.02 3.00 16 22 C -0.04 -2.15 5.21 84.86 0.44 -1.71 16 23 N -0.93 -55.90 11.06 21.65 0.24 -55.66 16 24 Si 0.95 47.07 29.55 68.60 2.03 49.10 16 25 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 28 C 0.20 9.57 3.49 86.16 0.30 9.87 16 29 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 30 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.10 3.42 5.57 -2.38 -0.01 3.41 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.50 8.14 -2.38 -0.02 1.49 16 35 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.22 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.20 2.73 5.16 -2.91 -0.02 2.72 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.12 1.96 4.48 -2.39 -0.01 1.95 16 40 H 0.05 1.66 7.84 -2.39 -0.02 1.64 16 41 H 0.12 2.12 7.83 -2.39 -0.02 2.11 16 42 H 0.07 2.44 6.54 -2.39 -0.02 2.42 16 43 H 0.03 1.68 7.53 -2.39 -0.02 1.66 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.05 1.57 6.65 -2.38 -0.02 1.56 16 47 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.04 1.84 7.94 -2.39 -0.02 1.82 16 49 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 51 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 52 H 0.04 2.13 6.35 -2.39 -0.02 2.12 16 Total: -1.00 -77.26 396.76 4.17 -73.09 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.91 Total: 18.21 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 7.28 Total: 12.64 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -5.99 Total: -126.90 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.06 Total: -26.14 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -77.26 4.17 -73.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040223878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.399 kcal (2) G-P(sol) polarization free energy of solvation -77.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds