Wall clock time and date at job start Wed Apr 1 2020 04:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 N 1.46494 * 109.47308 * 120.00554 * 2 1 3 5 5 C 1.34257 * 125.75050 * 274.99820 * 4 2 1 6 6 C 1.38049 * 107.41648 * 179.97438 * 5 4 2 7 7 C 1.47427 * 126.41502 * 179.97438 * 6 5 4 8 8 O 1.21600 * 120.00421 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99816 * 180.02562 * 7 6 5 10 10 C 1.47079 * 125.63146 * 0.02562 * 9 7 6 11 11 C 1.54451 * 107.29919 * 178.97817 * 10 9 7 12 12 C 1.54393 * 102.87566 * 338.50245 * 11 10 9 13 13 C 1.47570 * 125.62473 * 179.97438 * 9 7 6 14 14 C 1.52103 * 110.51470 * 276.65932 * 12 11 10 15 15 C 1.53341 * 109.44472 * 295.88633 * 14 12 11 16 16 N 1.46931 * 108.69412 * 306.70928 * 15 14 12 17 17 C 1.36940 * 120.55457 * 234.32945 * 16 15 14 18 18 H 1.07996 * 120.00064 * 27.98507 * 17 16 15 19 19 C 1.38816 * 119.99379 * 207.98438 * 17 16 15 20 20 N 1.31617 * 120.00238 * 17.46554 * 19 17 16 21 21 Si 1.86799 * 119.99500 * 197.46096 * 19 17 16 22 22 H 1.48501 * 109.47225 * 90.00425 * 21 19 17 23 23 H 1.48503 * 109.46816 * 210.00316 * 21 19 17 24 24 H 1.48501 * 109.47432 * 330.00090 * 21 19 17 25 25 C 1.46933 * 118.88854 * 54.34963 * 16 15 14 26 26 C 1.52100 * 110.51042 * 152.62355 * 12 11 10 27 27 C 1.41291 * 107.17121 * 0.23095 * 6 5 4 28 28 N 1.30449 * 108.02126 * 359.61034 * 27 6 5 29 29 H 1.09000 * 109.47455 * 299.99620 * 1 2 3 30 30 H 1.09004 * 109.47485 * 59.99519 * 1 2 3 31 31 H 1.09001 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46823 * 240.00579 * 2 1 3 33 33 H 1.09009 * 109.46743 * 59.99941 * 3 2 1 34 34 H 1.08994 * 109.47635 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47196 * 300.00658 * 3 2 1 36 36 H 1.07994 * 126.29733 * 359.95783 * 5 4 2 37 37 H 1.09006 * 109.87510 * 59.54916 * 10 9 7 38 38 H 1.09002 * 109.87950 * 298.40719 * 10 9 7 39 39 H 1.09006 * 110.73352 * 220.15636 * 11 10 9 40 40 H 1.09006 * 110.73218 * 96.84968 * 11 10 9 41 41 H 1.09004 * 110.37919 * 84.52693 * 13 9 7 42 42 H 1.08999 * 110.38056 * 322.17882 * 13 9 7 43 43 H 1.09000 * 109.47816 * 55.87389 * 14 12 11 44 44 H 1.08992 * 109.48030 * 175.89730 * 14 12 11 45 45 H 1.09004 * 109.60307 * 186.95126 * 15 14 12 46 46 H 1.08997 * 109.60222 * 66.47234 * 15 14 12 47 47 H 0.97005 * 119.99851 * 179.97438 * 20 19 17 48 48 H 1.08996 * 109.60357 * 185.88223 * 25 16 15 49 49 H 1.08999 * 109.73649 * 65.47779 * 25 16 15 50 50 H 1.09001 * 109.47746 * 184.09630 * 26 12 11 51 51 H 1.09003 * 109.47568 * 304.11003 * 26 12 11 52 52 H 1.08000 * 125.99080 * 179.73928 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1903 -0.1364 2.4067 6 6 2.6623 -1.1227 3.2494 7 6 2.9940 -0.9685 4.6776 8 8 2.8578 0.1110 5.2204 9 7 3.4483 -2.0243 5.3817 10 6 3.6595 -3.3802 4.8524 11 6 4.2098 -4.2439 6.0086 12 6 4.7920 -3.1918 6.9771 13 6 3.8168 -2.0102 6.8105 14 6 6.1964 -2.7934 6.5498 15 6 7.1257 -4.0087 6.6540 16 7 7.0168 -4.5701 8.0074 17 6 8.1345 -4.7529 8.7772 18 1 8.9974 -4.1192 8.6354 19 6 8.1582 -5.7528 9.7399 20 7 7.2789 -6.7311 9.6944 21 14 9.4382 -5.7098 11.0997 22 1 8.9039 -4.9504 12.2586 23 1 9.7585 -7.0970 11.5220 24 1 10.6699 -5.0479 10.5995 25 6 5.6887 -4.9326 8.5208 26 6 4.7677 -3.7119 8.4062 27 6 2.7735 -2.3060 2.4855 28 7 2.3837 -2.0395 1.2695 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.6766 1.9563 0.8901 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.9955 0.8921 2.6724 37 1 4.3809 -3.3510 4.0357 38 1 2.7139 -3.7919 4.4997 39 1 4.9918 -4.9140 5.6513 40 1 3.4071 -4.8058 6.4863 41 1 2.9333 -2.1571 7.4318 42 1 4.3097 -1.0723 7.0662 43 1 6.1759 -2.4389 5.5193 44 1 6.5626 -1.9992 7.2002 45 1 8.1543 -3.6995 6.4681 46 1 6.8291 -4.7596 5.9217 47 1 7.2958 -7.4300 10.3669 48 1 5.7699 -5.2326 9.5656 49 1 5.2795 -5.7556 7.9348 50 1 5.1137 -2.9307 9.0831 51 1 3.7500 -3.9982 8.6715 52 1 3.1186 -3.2639 2.8458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040911721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:17 Heat of formation + Delta-G solvation = 68.606935 kcal Electronic energy + Delta-G solvation = -31191.703059 eV Core-core repulsion = 27193.549961 eV Total energy + Delta-G solvation = -3998.153098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.70116 -40.12879 -38.19938 -36.20105 -35.80163 -33.09229 -31.14229 -30.71971 -30.29507 -29.93573 -29.33910 -27.91472 -27.02414 -24.52530 -23.56678 -23.35847 -22.23002 -21.55389 -20.85589 -20.23883 -19.57481 -18.28055 -17.39843 -16.48667 -16.18497 -15.96330 -15.63706 -15.45311 -14.89296 -14.77936 -14.51265 -14.29604 -13.91047 -13.57898 -13.50729 -13.30412 -13.19108 -13.03985 -12.85470 -12.80582 -12.77220 -12.54492 -12.23135 -12.02991 -11.93456 -11.77543 -11.43905 -11.26314 -11.16078 -11.01424 -10.73548 -10.66524 -10.42144 -10.21416 -10.07764 -9.81943 -9.81715 -9.79367 -9.50987 -9.37073 -8.92406 -8.44475 -8.41983 -6.63710 -5.77126 -3.18733 1.36438 2.01268 2.04772 3.12914 3.39545 3.46782 3.47384 3.47595 3.94812 4.27899 4.45150 4.46578 4.51291 4.52386 4.71308 4.81475 4.89341 4.95147 5.05077 5.09732 5.14219 5.19174 5.26994 5.34409 5.38257 5.41640 5.48308 5.50722 5.55333 5.59767 5.71560 5.86110 5.99719 6.01290 6.10463 6.17615 6.21799 6.24082 6.37948 6.44294 6.57487 6.58675 6.67140 6.73742 6.77546 6.88975 7.01456 7.34060 7.39098 7.67142 7.69258 7.82281 8.32753 8.47673 9.23994 9.87546 10.43867 11.31064 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.030312 B = 0.002103 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.492307 B =13312.890420 C =13413.834645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.151 3.849 3 C -0.168 4.168 4 N -0.357 5.357 5 C 0.126 3.874 6 C -0.286 4.286 7 C 0.607 3.393 8 O -0.558 6.558 9 N -0.608 5.608 10 C 0.095 3.905 11 C -0.124 4.124 12 C -0.055 4.055 13 C 0.116 3.884 14 C -0.117 4.117 15 C 0.147 3.853 16 N -0.591 5.591 17 C -0.250 4.250 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.280 1.280 25 C 0.173 3.827 26 C -0.126 4.126 27 C 0.069 3.931 28 N -0.300 5.300 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.184 0.816 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.087 0.913 49 H 0.020 0.980 50 H 0.057 0.943 51 H 0.051 0.949 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.122 12.032 -18.925 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.136 5.136 5 C -0.025 4.025 6 C -0.301 4.301 7 C 0.397 3.603 8 O -0.437 6.437 9 N -0.341 5.341 10 C -0.027 4.027 11 C -0.161 4.161 12 C -0.056 4.056 13 C -0.006 4.006 14 C -0.156 4.156 15 C 0.020 3.980 16 N -0.314 5.314 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.047 3.953 26 C -0.166 4.166 27 C -0.118 4.118 28 N -0.119 5.119 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.201 0.799 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.038 0.962 50 H 0.076 0.924 51 H 0.070 0.930 52 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -14.455 12.101 -19.901 27.413 hybrid contribution 0.707 0.231 1.512 1.685 sum -13.748 12.332 -18.389 26.062 Atomic orbital electron populations 1.22254 0.93237 1.03549 1.03365 1.21397 0.95098 0.92927 0.85606 1.22249 1.02629 0.93745 1.04026 1.48791 1.48800 1.07627 1.08424 1.22814 0.95671 0.99466 0.84560 1.20217 1.19466 0.94743 0.95697 1.16847 0.76419 0.82616 0.84371 1.90752 1.55528 1.25938 1.71510 1.48264 1.64761 1.09544 1.11505 1.22424 0.99927 0.82436 0.97963 1.22739 1.01005 0.97424 0.94963 1.20991 0.94627 0.93151 0.96818 1.22366 0.97887 0.99949 0.80368 1.21819 0.94384 0.99949 0.99440 1.20945 0.96673 0.92352 0.87991 1.44043 1.02984 1.73531 1.10805 1.19196 0.94350 1.10836 1.13601 0.91783 1.25018 0.98493 0.94971 1.01204 1.70028 1.38170 1.11352 1.35169 0.86311 0.81272 0.76721 0.82598 1.21485 1.21841 1.20496 1.20786 0.82925 0.90605 1.00961 1.22041 0.99945 1.01321 0.93297 1.24817 0.97118 0.99665 0.90198 1.77198 1.21066 0.92731 1.20874 0.91686 0.90194 0.91427 0.87539 0.91231 0.91203 0.89640 0.79898 0.91178 0.91426 0.89040 0.90608 0.91696 0.90632 0.93172 0.92222 0.92946 0.96304 0.93694 0.89481 0.96212 0.92393 0.93012 0.78356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 9.52 37.15 0.35 -0.46 16 2 C 0.15 0.91 3.91 -67.94 -0.27 0.64 16 3 C -0.17 -0.70 8.82 37.16 0.33 -0.37 16 4 N -0.36 -3.44 3.50 -54.32 -0.19 -3.63 16 5 C 0.13 1.34 10.39 -16.56 -0.17 1.17 16 6 C -0.29 -3.63 6.09 -105.06 -0.64 -4.27 16 7 C 0.61 9.22 7.85 -12.52 -0.10 9.13 16 8 O -0.56 -10.14 17.17 5.28 0.09 -10.05 16 9 N -0.61 -8.59 3.32 -172.04 -0.57 -9.16 16 10 C 0.10 1.12 4.60 -2.97 -0.01 1.11 16 11 C -0.12 -1.69 4.92 -25.24 -0.12 -1.82 16 12 C -0.05 -0.86 0.55 -154.11 -0.08 -0.95 16 13 C 0.12 1.75 5.81 -2.88 -0.02 1.73 16 14 C -0.12 -1.99 4.85 -27.01 -0.13 -2.12 16 15 C 0.15 2.95 6.21 -3.63 -0.02 2.93 16 16 N -0.59 -14.25 2.98 -172.12 -0.51 -14.77 16 17 C -0.25 -6.75 9.57 -15.06 -0.14 -6.89 16 18 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 19 C 0.00 0.04 4.90 -17.43 -0.09 -0.04 16 20 N -0.90 -25.69 11.20 55.49 0.62 -25.07 16 21 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.17 3.91 5.05 -3.63 -0.02 3.89 16 26 C -0.13 -2.27 4.84 -27.01 -0.13 -2.41 16 27 C 0.07 0.79 10.45 -16.98 -0.18 0.61 16 28 N -0.30 -3.51 12.50 30.86 0.39 -3.13 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.28 7.13 -51.92 -0.37 -0.09 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.18 1.58 7.23 -52.49 -0.38 1.20 16 37 H 0.07 0.76 6.82 -51.93 -0.35 0.41 16 38 H 0.07 0.68 7.01 -51.93 -0.36 0.31 16 39 H 0.09 1.34 6.18 -51.93 -0.32 1.02 16 40 H 0.08 1.00 7.98 -51.93 -0.41 0.59 16 41 H 0.06 0.95 7.99 -51.93 -0.41 0.53 16 42 H 0.08 1.23 7.94 -51.93 -0.41 0.81 16 43 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.02 0.38 6.55 -51.93 -0.34 0.04 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.09 2.25 6.01 -51.93 -0.31 1.94 16 49 H 0.02 0.46 7.62 -51.93 -0.40 0.06 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 52 H 0.20 1.89 4.47 -52.49 -0.23 1.66 16 LS Contribution 398.00 15.07 6.00 6.00 Total: -1.00 -32.79 398.00 -9.13 -41.92 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.48 Total: -0.54 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.44 Total: 1.88 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.27 Total: -55.76 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.79 -9.13 -41.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040911721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.526 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds