Wall clock time and date at job start Wed Apr 1 2020 04:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47440 * 2 1 4 4 H 1.09000 * 109.46789 * 55.00267 * 3 2 1 5 5 C 1.52995 * 109.47109 * 295.00139 * 3 2 1 6 6 N 1.46502 * 109.47412 * 174.99968 * 3 2 1 7 7 N 1.28443 * 125.18918 * 66.53916 * 6 3 2 8 8 C 1.30866 * 110.92422 * 180.02562 * 7 6 3 9 9 C 1.39668 * 107.86171 * 359.77184 * 8 7 6 10 10 C 1.36598 * 125.18960 * 246.56975 * 6 3 2 11 11 C 1.47165 * 126.88269 * 359.93690 * 10 6 3 12 12 O 1.21622 * 120.00129 * 10.35115 * 11 10 6 13 13 N 1.34781 * 119.99850 * 190.34983 * 11 10 6 14 14 C 1.48264 * 127.73277 * 0.94355 * 13 11 10 15 15 C 1.54709 * 104.66789 * 141.18974 * 14 13 11 16 16 C 1.53043 * 104.47250 * 23.66293 * 15 14 13 17 17 C 1.53886 * 111.36978 * 121.01891 * 16 15 14 18 18 C 1.55145 * 101.45324 * 154.99521 * 17 16 15 19 19 N 1.47535 * 105.06428 * 324.20075 * 18 17 16 20 20 C 1.36936 * 125.67202 * 203.97380 * 19 18 17 21 21 H 1.08006 * 120.00215 * 146.79277 * 20 19 18 22 22 C 1.38813 * 120.00105 * 326.79066 * 20 19 18 23 23 N 1.31616 * 120.00042 * 163.48979 * 22 20 19 24 24 Si 1.86806 * 119.99751 * 343.49723 * 22 20 19 25 25 H 1.48500 * 109.47114 * 88.42489 * 24 22 20 26 26 H 1.48498 * 109.47040 * 208.42188 * 24 22 20 27 27 H 1.48492 * 109.46967 * 328.42584 * 24 22 20 28 28 C 1.47603 * 108.52321 * 23.93829 * 19 18 17 29 29 C 1.48445 * 127.73538 * 180.93881 * 13 11 10 30 30 H 1.08999 * 109.47151 * 300.00124 * 1 2 3 31 31 H 1.09000 * 109.46734 * 59.99828 * 1 2 3 32 32 H 1.08998 * 109.47553 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47422 * 240.00207 * 2 1 3 34 34 H 1.09002 * 109.47397 * 119.99834 * 2 1 3 35 35 H 1.09005 * 109.47052 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47400 * 299.99755 * 5 3 2 37 37 H 1.09001 * 109.47227 * 59.99531 * 5 3 2 38 38 H 1.08002 * 126.06433 * 180.02562 * 8 7 6 39 39 H 1.08007 * 127.32000 * 180.23837 * 9 8 7 40 40 H 1.08997 * 110.40203 * 22.38917 * 14 13 11 41 41 H 1.09007 * 110.49095 * 260.03543 * 14 13 11 42 42 H 1.09001 * 110.43337 * 264.91558 * 15 14 13 43 43 H 1.08996 * 110.54044 * 142.46023 * 15 14 13 44 44 H 1.08996 * 111.03393 * 36.94399 * 17 16 15 45 45 H 1.09008 * 111.05856 * 273.04546 * 17 16 15 46 46 H 1.08994 * 110.33913 * 83.12804 * 18 17 16 47 47 H 1.08997 * 110.33829 * 205.27358 * 18 17 16 48 48 H 0.97000 * 119.99757 * 180.02562 * 23 22 20 49 49 H 1.08995 * 109.94772 * 238.66119 * 28 19 18 50 50 H 1.09000 * 109.96522 * 117.40846 * 28 19 18 51 51 H 1.09006 * 110.46229 * 99.70310 * 29 13 11 52 52 H 1.08997 * 110.46527 * 337.11634 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 7 3.5001 1.4442 0.1204 7 7 4.3164 0.9994 -0.7659 8 6 5.5563 1.1373 -0.3705 9 6 5.5394 1.7338 0.8923 10 6 4.2010 1.9186 1.1926 11 6 3.6447 2.5131 2.4185 12 8 2.4497 2.4517 2.6360 13 7 4.4595 3.1257 3.3002 14 6 5.9265 3.3157 3.1995 15 6 6.1767 4.7368 3.7572 16 6 4.9746 5.0088 4.6645 17 6 5.4168 5.2944 6.1106 18 6 4.2273 6.1414 6.6348 19 7 3.7980 6.9548 5.4813 20 6 3.1253 8.1456 5.5500 21 1 3.3018 8.9093 4.8070 22 6 2.2164 8.3711 6.5747 23 7 1.8157 9.5962 6.8411 24 14 1.5621 6.9359 7.5755 25 1 2.4672 6.6804 8.7247 26 1 0.2035 7.2618 8.0785 27 1 1.4957 5.7247 6.7190 28 6 4.2164 6.2697 4.2427 29 6 4.0893 3.7615 4.5894 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9983 3.1544 -1.3071 36 1 2.0699 1.5875 -2.1491 37 1 0.5490 2.1252 -1.3969 38 1 6.4364 0.8458 -0.9244 39 1 6.3899 1.9935 1.5052 40 1 6.2472 3.2537 2.1596 41 1 6.4497 2.5733 3.8024 42 1 6.2129 5.4633 2.9454 43 1 7.1019 4.7643 4.3329 44 1 6.3438 5.8673 6.1303 45 1 5.5188 4.3697 6.6788 46 1 3.4159 5.4923 6.9636 47 1 4.5519 6.7849 7.4525 48 1 1.1809 9.7538 7.5574 49 1 4.8697 6.9197 3.6606 50 1 3.3405 5.9977 3.6537 51 1 4.3049 3.0905 5.4210 52 1 3.0358 4.0414 4.5877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041331698.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:04 Heat of formation + Delta-G solvation = 84.557156 kcal Electronic energy + Delta-G solvation = -31817.271864 eV Core-core repulsion = 27819.810420 eV Total energy + Delta-G solvation = -3997.461444 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.77712 -40.28748 -38.43700 -36.80067 -35.91609 -32.89934 -31.82831 -31.46701 -30.70167 -29.53493 -29.20433 -28.41765 -26.35085 -25.17217 -24.52379 -22.84061 -22.42021 -22.10426 -20.90484 -20.73477 -19.32742 -18.91323 -17.42950 -16.74145 -16.64870 -16.18505 -15.67729 -15.56077 -15.35779 -15.22679 -14.87188 -14.34991 -14.20527 -13.88381 -13.82018 -13.53986 -13.45482 -13.13446 -12.92251 -12.58206 -12.51372 -12.26743 -12.09961 -12.04334 -11.99326 -11.82691 -11.64233 -11.56432 -11.35871 -11.14252 -10.97160 -10.91577 -10.73194 -10.54394 -10.31720 -10.09458 -9.98514 -9.95949 -9.53458 -9.38488 -9.18910 -8.80067 -8.61154 -6.85107 -5.97490 -3.39554 1.12690 2.10568 2.45308 2.89036 3.08214 3.34469 3.47535 3.52378 4.14784 4.21195 4.49310 4.51682 4.53880 4.63661 4.72226 4.79173 4.85252 4.93190 4.97731 5.04123 5.08843 5.11296 5.21257 5.22768 5.30529 5.40262 5.45470 5.47920 5.53097 5.57655 5.60792 5.63104 5.70102 5.72290 5.77731 5.82375 5.91651 5.94814 5.96737 6.06493 6.10037 6.23740 6.31907 6.33365 6.57058 6.59803 6.65294 6.67107 6.77156 7.36853 7.85975 7.87018 7.99655 8.33082 8.84178 9.66947 10.22528 11.18934 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013479 B = 0.003071 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.772774 B = 9113.884406 C =10287.427018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.131 3.869 4 H 0.134 0.866 5 C -0.160 4.160 6 N -0.248 5.248 7 N -0.275 5.275 8 C -0.008 4.008 9 C -0.204 4.204 10 C -0.028 4.028 11 C 0.608 3.392 12 O -0.540 6.540 13 N -0.604 5.604 14 C 0.081 3.919 15 C -0.119 4.119 16 C -0.087 4.087 17 C -0.117 4.117 18 C 0.112 3.888 19 N -0.608 5.608 20 C -0.245 4.245 21 H 0.084 0.916 22 C 0.031 3.969 23 N -0.909 5.909 24 Si 0.887 3.113 25 H -0.285 1.285 26 H -0.301 1.301 27 H -0.271 1.271 28 C 0.147 3.853 29 C 0.125 3.875 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.185 0.815 39 H 0.171 0.829 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.023 0.977 47 H 0.056 0.944 48 H 0.264 0.736 49 H 0.035 0.965 50 H 0.031 0.969 51 H 0.075 0.925 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.689 -20.176 -12.973 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.031 3.969 4 H 0.151 0.849 5 C -0.218 4.218 6 N -0.036 5.036 7 N -0.107 5.107 8 C -0.184 4.184 9 C -0.233 4.233 10 C -0.157 4.157 11 C 0.396 3.604 12 O -0.418 6.418 13 N -0.337 5.337 14 C -0.041 4.041 15 C -0.157 4.157 16 C -0.088 4.088 17 C -0.156 4.156 18 C -0.013 4.013 19 N -0.335 5.335 20 C -0.373 4.373 21 H 0.102 0.898 22 C -0.169 4.169 23 N -0.552 5.552 24 Si 0.717 3.283 25 H -0.212 1.212 26 H -0.229 1.229 27 H -0.197 1.197 28 C 0.023 3.977 29 C 0.003 3.997 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.202 0.798 39 H 0.188 0.812 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.040 0.960 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.053 0.947 50 H 0.049 0.951 51 H 0.093 0.907 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.988 -20.439 -13.737 25.598 hybrid contribution 0.159 -0.412 1.336 1.407 sum 7.147 -20.850 -12.401 25.290 Atomic orbital electron populations 1.21786 0.93981 1.02429 1.02672 1.21809 0.97066 0.94408 1.03150 1.22164 0.72810 0.99362 1.02565 0.84855 1.22147 1.02638 1.00978 0.96000 1.46005 1.07507 1.40232 1.09906 1.73123 1.01448 1.18415 1.17756 1.23581 0.94488 1.04192 0.96119 1.22742 0.95168 1.06432 0.98909 1.21329 0.92293 1.08937 0.93133 1.16441 0.85021 0.77866 0.81091 1.90767 1.14414 1.60087 1.76537 1.48669 1.08730 1.55279 1.21003 1.23088 0.80409 0.97795 1.02835 1.22496 0.98100 0.95604 0.99525 1.21621 0.95103 0.95423 0.96658 1.22710 0.99370 0.99755 0.93731 1.22025 0.93346 0.93569 0.92384 1.44843 1.66648 1.22816 0.99207 1.18560 1.16203 0.88960 1.13554 0.89799 1.25381 0.96659 0.96179 0.98679 1.69788 1.34674 1.18982 1.31721 0.86799 0.77872 0.83685 0.79946 1.21185 1.22886 1.19671 1.21401 0.95965 0.89883 0.90500 1.22396 1.01284 0.92579 0.83413 0.91871 0.92006 0.91976 0.90807 0.91450 0.91921 0.91018 0.89990 0.79825 0.81158 0.88574 0.90522 0.90297 0.89750 0.90562 0.91388 0.95982 0.92612 0.92622 0.94662 0.95094 0.90720 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 2 C -0.13 -1.24 5.67 -26.73 -0.15 -1.39 16 3 C 0.13 1.51 2.96 -67.93 -0.20 1.31 16 4 H 0.13 1.81 5.50 -51.93 -0.29 1.53 16 5 C -0.16 -1.55 9.04 37.15 0.34 -1.22 16 6 N -0.25 -3.16 3.09 -50.69 -0.16 -3.32 16 7 N -0.28 -3.32 11.50 30.59 0.35 -2.97 16 8 C -0.01 -0.08 12.03 -17.43 -0.21 -0.29 16 9 C -0.20 -2.07 9.36 -38.99 -0.36 -2.43 16 10 C -0.03 -0.37 6.90 -82.06 -0.57 -0.94 16 11 C 0.61 9.17 7.88 -12.63 -0.10 9.07 16 12 O -0.54 -9.73 14.75 5.26 0.08 -9.65 16 13 N -0.60 -8.11 3.33 -170.88 -0.57 -8.68 16 14 C 0.08 0.77 5.94 -2.17 -0.01 0.75 16 15 C -0.12 -1.28 6.31 -25.81 -0.16 -1.44 16 16 C -0.09 -1.28 0.79 -153.92 -0.12 -1.40 16 17 C -0.12 -1.76 5.90 -25.13 -0.15 -1.90 16 18 C 0.11 2.33 4.87 -2.34 -0.01 2.31 16 19 N -0.61 -14.56 3.02 -170.15 -0.51 -15.07 16 20 C -0.25 -7.00 10.54 -15.06 -0.16 -7.16 16 21 H 0.08 2.57 8.06 -52.48 -0.42 2.14 16 22 C 0.03 0.91 5.46 -17.43 -0.10 0.81 16 23 N -0.91 -28.18 13.97 55.49 0.78 -27.41 16 24 Si 0.89 22.88 24.63 -169.99 -4.19 18.69 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 27 H -0.27 -6.94 6.66 56.52 0.38 -6.56 16 28 C 0.15 2.90 6.37 -3.41 -0.02 2.88 16 29 C 0.12 1.87 6.04 -2.90 -0.02 1.86 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.08 0.64 6.56 -51.93 -0.34 0.30 16 38 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.17 1.24 5.08 -52.48 -0.27 0.98 16 40 H 0.10 0.77 4.57 -51.93 -0.24 0.53 16 41 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 42 H 0.08 0.87 7.41 -51.93 -0.38 0.49 16 43 H 0.08 0.74 7.62 -51.93 -0.40 0.35 16 44 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 45 H 0.07 0.85 7.65 -51.92 -0.40 0.45 16 46 H 0.02 0.49 5.18 -51.93 -0.27 0.22 16 47 H 0.06 1.22 7.91 -51.93 -0.41 0.81 16 48 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 49 H 0.04 0.68 7.48 -51.93 -0.39 0.29 16 50 H 0.03 0.67 7.63 -51.93 -0.40 0.27 16 51 H 0.07 1.00 7.59 -51.93 -0.39 0.60 16 52 H 0.09 1.68 7.40 -51.93 -0.38 1.30 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -34.42 394.31 -8.19 -42.61 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.26 Total: -0.12 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.65 Total: -0.04 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.11 Total: -57.44 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.19 Total: 18.69 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.42 -8.19 -42.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041331698.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.170 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds